BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0225900 Os12g0225900|J100068F02
(111 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0225900 Alcohol dehydrogenase superfamily, zinc-contai... 191 8e-50
Os12g0226900 Similar to Allyl alcohol dehydrogenase 107 1e-24
Os12g0226700 Similar to Allyl alcohol dehydrogenase 102 8e-23
Os11g0255500 Similar to Allyl alcohol dehydrogenase 100 2e-22
Os01g0891300 Similar to Allyl alcohol dehydrogenase 94 3e-20
Os04g0497000 Similar to Allyl alcohol dehydrogenase 87 2e-18
Os12g0226400 Similar to Quinone oxidoreductase-like protein 80 5e-16
Os06g0602900 Alcohol dehydrogenase superfamily, zinc-contai... 78 2e-15
>Os12g0225900 Alcohol dehydrogenase superfamily, zinc-containing protein
Length = 111
Score = 191 bits (486), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 97/97 (100%), Positives = 97/97 (100%)
Query: 1 MSLPVSLLYLILDNSGIAGLTAYGGFFEVSKPKKGDYVFVSAASGAVGQIVGQLAKITGC 60
MSLPVSLLYLILDNSGIAGLTAYGGFFEVSKPKKGDYVFVSAASGAVGQIVGQLAKITGC
Sbjct: 1 MSLPVSLLYLILDNSGIAGLTAYGGFFEVSKPKKGDYVFVSAASGAVGQIVGQLAKITGC 60
Query: 61 YVVGSAGSDEKVFTTISFSLCIELTKLNKTSSPLIGQ 97
YVVGSAGSDEKVFTTISFSLCIELTKLNKTSSPLIGQ
Sbjct: 61 YVVGSAGSDEKVFTTISFSLCIELTKLNKTSSPLIGQ 97
>Os12g0226900 Similar to Allyl alcohol dehydrogenase
Length = 346
Score = 107 bits (268), Expect = 1e-24, Method: Composition-based stats.
Identities = 56/70 (80%), Positives = 60/70 (85%), Gaps = 3/70 (4%)
Query: 3 LPVSLLYLILDNSGIAGLTAYGGFFEVSKPKKGDYVFVSAASGAVGQIVGQLAKITGCYV 62
LP+S IL G+ GLTAY GFFEVSKPKKG+YVF+SAASGAVGQIVGQLAKI GCYV
Sbjct: 128 LPLSYYTGIL---GMPGLTAYAGFFEVSKPKKGEYVFISAASGAVGQIVGQLAKIIGCYV 184
Query: 63 VGSAGSDEKV 72
VGSAGSDEKV
Sbjct: 185 VGSAGSDEKV 194
>Os12g0226700 Similar to Allyl alcohol dehydrogenase
Length = 346
Score = 102 bits (253), Expect = 8e-23, Method: Composition-based stats.
Identities = 51/70 (72%), Positives = 58/70 (82%), Gaps = 3/70 (4%)
Query: 3 LPVSLLYLILDNSGIAGLTAYGGFFEVSKPKKGDYVFVSAASGAVGQIVGQLAKITGCYV 62
LP+S IL G+ GLTAY GFF+V KPKKG+YVF+S ASGAVGQ+VGQLAKITGCYV
Sbjct: 128 LPLSYYTGIL---GMPGLTAYAGFFDVPKPKKGEYVFISGASGAVGQVVGQLAKITGCYV 184
Query: 63 VGSAGSDEKV 72
+GSAG DEKV
Sbjct: 185 IGSAGYDEKV 194
>Os11g0255500 Similar to Allyl alcohol dehydrogenase
Length = 359
Score = 100 bits (250), Expect = 2e-22, Method: Composition-based stats.
Identities = 53/70 (75%), Positives = 57/70 (81%), Gaps = 3/70 (4%)
Query: 3 LPVSLLYLILDNSGIAGLTAYGGFFEVSKPKKGDYVFVSAASGAVGQIVGQLAKITGCYV 62
LP+S +L G+ GLTAY FFEV KPKKG+ VFVSAASGAVGQIVGQLAKI GCYV
Sbjct: 140 LPLSYYTGVL---GVTGLTAYAAFFEVGKPKKGETVFVSAASGAVGQIVGQLAKIAGCYV 196
Query: 63 VGSAGSDEKV 72
VGSAGSDEKV
Sbjct: 197 VGSAGSDEKV 206
>Os01g0891300 Similar to Allyl alcohol dehydrogenase
Length = 359
Score = 93.6 bits (231), Expect = 3e-20, Method: Composition-based stats.
Identities = 42/57 (73%), Positives = 51/57 (89%)
Query: 16 GIAGLTAYGGFFEVSKPKKGDYVFVSAASGAVGQIVGQLAKITGCYVVGSAGSDEKV 72
G+ G TAY GF+E+ PKKG++VFVSAASGAVGQIVGQLAK+ GCYVVGSAG+++KV
Sbjct: 145 GMPGFTAYAGFYEICSPKKGEFVFVSAASGAVGQIVGQLAKLHGCYVVGSAGTNQKV 201
>Os04g0497000 Similar to Allyl alcohol dehydrogenase
Length = 345
Score = 87.0 bits (214), Expect = 2e-18, Method: Composition-based stats.
Identities = 44/70 (62%), Positives = 55/70 (78%), Gaps = 3/70 (4%)
Query: 3 LPVSLLYLILDNSGIAGLTAYGGFFEVSKPKKGDYVFVSAASGAVGQIVGQLAKITGCYV 62
LP+S +L G+AG TAY GF E+ P++G+ V+VSAASGAVGQ+VGQ AK+ GCYV
Sbjct: 127 LPLSYYTGLL---GMAGFTAYVGFHEICAPREGERVYVSAASGAVGQLVGQFAKLMGCYV 183
Query: 63 VGSAGSDEKV 72
VGSAGSD+KV
Sbjct: 184 VGSAGSDDKV 193
>Os12g0226400 Similar to Quinone oxidoreductase-like protein
Length = 204
Score = 79.7 bits (195), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/58 (72%), Positives = 46/58 (79%), Gaps = 8/58 (13%)
Query: 15 SGIAGLTAYGGFFEVSKPKKGDYVFVSAASGAVGQIVGQLAKITGCYVVGSAGSDEKV 72
SG+ GLTAY GFFE+SKPKK A GA+GQIVGQLAKI GCYVVGSAGSD+KV
Sbjct: 5 SGMHGLTAYVGFFEMSKPKK--------ACGAIGQIVGQLAKIKGCYVVGSAGSDDKV 54
>Os06g0602900 Alcohol dehydrogenase superfamily, zinc-containing protein
Length = 241
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/58 (60%), Positives = 47/58 (81%)
Query: 15 SGIAGLTAYGGFFEVSKPKKGDYVFVSAASGAVGQIVGQLAKITGCYVVGSAGSDEKV 72
+G +G+TAY G +EV +P+ G+ VFVSAASG+VG +VGQ AK+ GCYVVG AG++ KV
Sbjct: 174 AGTSGMTAYAGLYEVGRPEAGEKVFVSAASGSVGSLVGQFAKLAGCYVVGCAGTNAKV 231
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.136 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,956,194
Number of extensions: 100285
Number of successful extensions: 231
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 230
Number of HSP's successfully gapped: 8
Length of query: 111
Length of database: 17,035,801
Length adjustment: 78
Effective length of query: 33
Effective length of database: 12,963,109
Effective search space: 427782597
Effective search space used: 427782597
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 149 (62.0 bits)