BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0708900 Os11g0708900|Os11g0708900
(700 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0708900 Similar to Phenylalanine ammonia-lyase (EC 4.3... 1318 0.0
Os12g0520200 Phenylalanine/histidine ammonia-lyase family p... 1032 0.0
Os04g0518400 Similar to Phenylalanine ammonia-lyase (Fragment) 986 0.0
Os02g0627100 Similar to Phenylalanine ammonia-lyase (EC 4.3... 985 0.0
Os05g0427400 Similar to Phenylalanine ammonia-lyase (Fragment) 969 0.0
Os02g0626600 Phenylalanine ammonia-lyase family protein 961 0.0
Os02g0626100 Similar to Phenylalanine ammonia-lyase 910 0.0
Os04g0518200 Phenylalanine ammonia-lyase 905 0.0
Os12g0461300 156 6e-38
Os08g0308200 106 8e-23
Os08g0308300 89 1e-17
>Os11g0708900 Similar to Phenylalanine ammonia-lyase (EC 4.3.1.5) (Fragment)
Length = 700
Score = 1318 bits (3412), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 645/700 (92%), Positives = 645/700 (92%)
Query: 1 MECETGVNGSGPRGSDPLYWGKAAEGVAGSHLEEVKRMVVEYRAPLVKIDGAMLSXXXXX 60
MECETGVNGSGPRGSDPLYWGKAAEGVAGSHLEEVKRMVVEYRAPLVKIDGAMLS
Sbjct: 1 MECETGVNGSGPRGSDPLYWGKAAEGVAGSHLEEVKRMVVEYRAPLVKIDGAMLSVAKVA 60
Query: 61 XXXXXXXXXXXXLDESARPRLEASREWVFESTMNGTDTYGVTTGFGGAAHRRTKEFAALQ 120
LDESARPRLEASREWVFESTMNGTDTYGVTTGFGGAAHRRTKEFAALQ
Sbjct: 61 AVAGEAARVQVVLDESARPRLEASREWVFESTMNGTDTYGVTTGFGGAAHRRTKEFAALQ 120
Query: 121 KELIRYLNAGVFGASRSDGYTLPTEVTRAAMLVRINTLTQGYSGIRFEILEAIAKLLNAN 180
KELIRYLNAGVFGASRSDGYTLPTEVTRAAMLVRINTLTQGYSGIRFEILEAIAKLLNAN
Sbjct: 121 KELIRYLNAGVFGASRSDGYTLPTEVTRAAMLVRINTLTQGYSGIRFEILEAIAKLLNAN 180
Query: 181 VTPCLPLRGTITASGDLVPLSYIAGLITGRHNSAAVAPDGTKVDAAEAFRMAGIEHGFFA 240
VTPCLPLRGTITASGDLVPLSYIAGLITGRHNSAAVAPDGTKVDAAEAFRMAGIEHGFFA
Sbjct: 181 VTPCLPLRGTITASGDLVPLSYIAGLITGRHNSAAVAPDGTKVDAAEAFRMAGIEHGFFA 240
Query: 241 LQPKEGLAIVNGTAVGSGLAAIXXXXXXXXXXXXXXXXXXYCEVMAGNPEYTDHLIHALK 300
LQPKEGLAIVNGTAVGSGLAAI YCEVMAGNPEYTDHLIHALK
Sbjct: 241 LQPKEGLAIVNGTAVGSGLAAIVLFEANVLAVLAEVLSAVYCEVMAGNPEYTDHLIHALK 300
Query: 301 HHPGQIEAAAIMEHILEGSSYMKKLAKDKEQGQGELDRLTKLKQDRYAIRTAPQWLGPQV 360
HHPGQIEAAAIMEHILEGSSYMKKLAKDKEQGQGELDRLTKLKQDRYAIRTAPQWLGPQV
Sbjct: 301 HHPGQIEAAAIMEHILEGSSYMKKLAKDKEQGQGELDRLTKLKQDRYAIRTAPQWLGPQV 360
Query: 361 EVIRFATKSIEREINSVNDNPVIDVARRKALHGGNFQGTPVGVSMDNTRLAIAAIGRLMF 420
EVIRFATKSIEREINSVNDNPVIDVARRKALHGGNFQGTPVGVSMDNTRLAIAAIGRLMF
Sbjct: 361 EVIRFATKSIEREINSVNDNPVIDVARRKALHGGNFQGTPVGVSMDNTRLAIAAIGRLMF 420
Query: 421 SQFSELVSSFYSNGLPSNLSGGRNPSLDYGFNGAEVAMASYCSELQFLANPVTNHVQTAE 480
SQFSELVSSFYSNGLPSNLSGGRNPSLDYGFNGAEVAMASYCSELQFLANPVTNHVQTAE
Sbjct: 421 SQFSELVSSFYSNGLPSNLSGGRNPSLDYGFNGAEVAMASYCSELQFLANPVTNHVQTAE 480
Query: 481 QHNQSVNSLGLISSRMTAEAVTILKLMSSTFLIALCQAVDLRQLEESIKAAVNKCVTNVA 540
QHNQSVNSLGLISSRMTAEAVTILKLMSSTFLIALCQAVDLRQLEESIKAAVNKCVTNVA
Sbjct: 481 QHNQSVNSLGLISSRMTAEAVTILKLMSSTFLIALCQAVDLRQLEESIKAAVNKCVTNVA 540
Query: 541 KKSXXXXXXXXXXXXXXXXXXXXRVAVFTYAEDPCRSSLPLMQKLRAVLMEHALANNGDI 600
KKS RVAVFTYAEDPCRSSLPLMQKLRAVLMEHALANNGDI
Sbjct: 541 KKSLTLAMDDDDHLLALLGAAIDRVAVFTYAEDPCRSSLPLMQKLRAVLMEHALANNGDI 600
Query: 601 LLAKVAEFEQQLRAVLPDEVEAARAAVESGTAPNRISDCRSYPLYRFVRKELGAEYLTGE 660
LLAKVAEFEQQLRAVLPDEVEAARAAVESGTAPNRISDCRSYPLYRFVRKELGAEYLTGE
Sbjct: 601 LLAKVAEFEQQLRAVLPDEVEAARAAVESGTAPNRISDCRSYPLYRFVRKELGAEYLTGE 660
Query: 661 KTRSPGEEVDKVVIAMNQHKHIHPLLECLSEWKGAPLPLS 700
KTRSPGEEVDKVVIAMNQHKHIHPLLECLSEWKGAPLPLS
Sbjct: 661 KTRSPGEEVDKVVIAMNQHKHIHPLLECLSEWKGAPLPLS 700
>Os12g0520200 Phenylalanine/histidine ammonia-lyase family protein
Length = 567
Score = 1032 bits (2669), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 515/576 (89%), Positives = 526/576 (91%), Gaps = 9/576 (1%)
Query: 125 RYLNAGVFGASRSDGYTLPTEVTRAAMLVRINTLTQGYSGIRFEILEAIAKLLNANVTPC 184
RYLNAGVFGASRSDGYTLPTEVTRAAMLVRINTLTQGYSGIRFEILEAIAKLLNANVTPC
Sbjct: 1 RYLNAGVFGASRSDGYTLPTEVTRAAMLVRINTLTQGYSGIRFEILEAIAKLLNANVTPC 60
Query: 185 LPLRGTITASGDLVPLSYIAGLITGRHNSAAVAPDGTKVDAAEAFRMAGIEHGFFALQPK 244
LPLRGTITASGDLVPLSYIAGLITGR NSAAVAPDG+KVDAAEAFR+AGIEHGFFALQPK
Sbjct: 61 LPLRGTITASGDLVPLSYIAGLITGRQNSAAVAPDGSKVDAAEAFRIAGIEHGFFALQPK 120
Query: 245 EGLAIVNGTAVGSGLAAIXXXXXXXXXXXXXXXXXXYCEVMAGNPEYTDHLIHALKHHPG 304
EGLAIVNGTAVGSGLAAI YCEVMAGNPEYTDHLIHALKHHPG
Sbjct: 121 EGLAIVNGTAVGSGLAAIVLFEANVLAVLAEVLSAVYCEVMAGNPEYTDHLIHALKHHPG 180
Query: 305 QIEAAAIMEHILEGSSYMKKLAKDKEQGQGELDRLTKLKQDRYAIRTAPQWLGPQVEVIR 364
QIEAAAIMEHILEGSSYM+ LAK+ QGELDRLTKL+QDRYAIRTAPQWLGPQVEVIR
Sbjct: 181 QIEAAAIMEHILEGSSYMR-LAKE----QGELDRLTKLRQDRYAIRTAPQWLGPQVEVIR 235
Query: 365 FATKSIEREINSVNDNPVIDVARRKALHGGNFQGTPVGVSMDNTRLAIAAIGRLMFSQFS 424
FATKSIEREINSVNDNPVIDVARRKALHGGNFQGTP+GVSMDNTRLAIAAIGRLMFSQFS
Sbjct: 236 FATKSIEREINSVNDNPVIDVARRKALHGGNFQGTPIGVSMDNTRLAIAAIGRLMFSQFS 295
Query: 425 ELVSSFYSNGLPSNLSGGRNPSLDYGFNGAEVAMASYCSELQFLANPVTNHVQTAEQHNQ 484
EL SSFYSNGLPSNLSGGRNPSLDYGFNGAEVAMASYCSELQFLANPVTNHVQTAEQHNQ
Sbjct: 296 ELASSFYSNGLPSNLSGGRNPSLDYGFNGAEVAMASYCSELQFLANPVTNHVQTAEQHNQ 355
Query: 485 SVNSLGLISSRMTAEAVTILKLMSSTFLIALCQAVDLRQLEESIKAAVNKCVTNVAKKSX 544
SVNSLGLISSRMTAEAVTILKLMSSTFLIALCQAVDLRQLEESIKAAVNKCVTNVAKKS
Sbjct: 356 SVNSLGLISSRMTAEAVTILKLMSSTFLIALCQAVDLRQLEESIKAAVNKCVTNVAKKS- 414
Query: 545 XXXXXXXXXXXXXXXXXXXRVAVFTYAEDPCRSSLPLMQKLRAVLMEHALANNGDILLAK 604
RVAVFTYAEDPCRSSLPL+QKLRAVLM+HALA NGD LAK
Sbjct: 415 --LAMDDDDLLALLGAAIDRVAVFTYAEDPCRSSLPLIQKLRAVLMDHALA-NGDNQLAK 471
Query: 605 VAEFEQQLRAVLPDEVEAARAAVESGTAPNRISDCRSYPLYRFVRKELGAEYLTGEKTRS 664
VAEFEQQLRAVL DEVEAARAAVESGTAPNRI+ CRSYPLYRFVRKELGAEYLTGEKTRS
Sbjct: 472 VAEFEQQLRAVLHDEVEAARAAVESGTAPNRITQCRSYPLYRFVRKELGAEYLTGEKTRS 531
Query: 665 PGEEVDKVVIAMNQHKHIHPLLECLSEWKGAPLPLS 700
PGEEVDKVVIAMNQHKHI+PLLECLSEWKGAPLPL+
Sbjct: 532 PGEEVDKVVIAMNQHKHINPLLECLSEWKGAPLPLN 567
>Os04g0518400 Similar to Phenylalanine ammonia-lyase (Fragment)
Length = 714
Score = 986 bits (2549), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 503/721 (69%), Positives = 562/721 (77%), Gaps = 30/721 (4%)
Query: 1 MECETG-----VNGSG-----PRGSDPLYWGKAAEGVAGSHLEEVKRMVVEYRAPLVKID 50
MECE G NGS PR +DPL WGKAAE ++GSHL+ VKRMV EYR P+V I+
Sbjct: 1 MECENGHVAAAANGSSLCVAKPR-ADPLNWGKAAEELSGSHLDAVKRMVEEYRRPVVTIE 59
Query: 51 GAMLSXXXXXXXXXXXXXXXXXLDESARPRLEASREWVFESTMNGTDTYGVTTGFGGAAH 110
GA L+ LDESAR R++AS +WV S MNGTD+YGVTTGFG +H
Sbjct: 60 GASLTIAQVAAVASAGAARVE-LDESARGRVKASSDWVMNSMMNGTDSYGVTTGFGATSH 118
Query: 111 RRTKEFAALQKELIRYLNAGVFGASRSDGYTLPTEVTRAAMLVRINTLTQGYSGIRFEIL 170
RRTKE ALQ+ELIR+LNAG FG + DG+ LP TRAAMLVRINTL QGYSGIRFEIL
Sbjct: 119 RRTKEGGALQRELIRFLNAGAFG-NGDDGHVLPAAATRAAMLVRINTLLQGYSGIRFEIL 177
Query: 171 EAIAKLLNANVTPCLPLRGTITASGDLVPLSYIAGLITGRHNSAAVAPDGTKVDAAEAFR 230
E IA LLNANVTPCLPLRGTITASGDLVPLSYIAGL+TGR NS AV PDG KVDAAEAF+
Sbjct: 178 ETIATLLNANVTPCLPLRGTITASGDLVPLSYIAGLVTGRPNSVAVTPDGRKVDAAEAFK 237
Query: 231 MAGIEHGFFALQPKEGLAIVNGTAVGSGLAAIXXXXXXXXXXXXXXXXXXYCEVMAGNPE 290
+AGI+HGFF LQPKEGLA+VNGTAVGSGLA++ +CEVM G PE
Sbjct: 238 IAGIQHGFFELQPKEGLAMVNGTAVGSGLASMVLFEANVLGVLAEVLSAVFCEVMNGKPE 297
Query: 291 YTDHLIHALKHHPGQIEAAAIMEHILEGSSYMKKLAKDKEQGQGELDRLTKLKQDRYAIR 350
YTDHL H LKHHPGQIEAAAIMEHILEGSSYM LAK GELD L K KQDRYA+R
Sbjct: 298 YTDHLTHKLKHHPGQIEAAAIMEHILEGSSYMM-LAKK----LGELDPLMKPKQDRYALR 352
Query: 351 TAPQWLGPQVEVIRFATKSIEREINSVNDNPVIDVARRKALHGGNFQGTPVGVSMDNTRL 410
T+PQWLGPQ+EVIR ATKSIEREINSVNDNP+IDV+R KALHGGNFQGTP+GVSMDNTRL
Sbjct: 353 TSPQWLGPQIEVIRAATKSIEREINSVNDNPLIDVSRGKALHGGNFQGTPIGVSMDNTRL 412
Query: 411 AIAAIGRLMFSQFSELVSSFYSNGLPSNLSGGRNPSLDYGFNGAEVAMASYCSELQFLAN 470
AIAAIG+LMF+QFSELV+ FY+NGLPSNLSGGRNPSLDYGF GAE+AMASYCSELQFLAN
Sbjct: 413 AIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLAN 472
Query: 471 PVTNHVQTAEQHNQSVNSLGLISSRMTAEAVTILKLMSSTFLIALCQAVDLRQLEESIKA 530
PVTNHVQ+AEQHNQ VNSLGLISSR TAEA+ +LKLMSSTFLIALCQA+DLR LEE++++
Sbjct: 473 PVTNHVQSAEQHNQDVNSLGLISSRKTAEAIDVLKLMSSTFLIALCQAIDLRHLEENVRS 532
Query: 531 AVNKCVTNVAKK----SXXXXXXXXXXXXXXXXXXXXRVAVFTYAEDPCRSSLPLMQKLR 586
AV CVT VA+K S R AVF YA+DPC ++ PLMQK+R
Sbjct: 533 AVKGCVTTVARKTLSTSATGDLHKARFCEKDLLQAIDREAVFAYADDPCSANYPLMQKMR 592
Query: 587 AVLMEHALAN-----NGDI-LLAKVAEFEQQLRAVLPDEVEAARAAVESGTA--PNRISD 638
AVL+EHALAN N D + AKVA FE++LR LP EVEAARAAVE+GTA NRI++
Sbjct: 593 AVLIEHALANGEAERNVDTSVFAKVATFEEELRVALPREVEAARAAVENGTAAKANRITE 652
Query: 639 CRSYPLYRFVRKELGAEYLTGEKTRSPGEEVDKVVIAMNQHKHIHPLLECLSEWKGAPLP 698
CRSYPLYRFVR+ELG EYLTGEKTRSPGEEV+KV +AMNQ KHI LLECL EW G PLP
Sbjct: 653 CRSYPLYRFVREELGTEYLTGEKTRSPGEEVNKVFVAMNQGKHIDALLECLKEWNGEPLP 712
Query: 699 L 699
+
Sbjct: 713 I 713
>Os02g0627100 Similar to Phenylalanine ammonia-lyase (EC 4.3.1.5)
Length = 713
Score = 985 bits (2547), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/719 (68%), Positives = 561/719 (78%), Gaps = 27/719 (3%)
Query: 1 MECETG-VNGSGPRG-------SDPLYWGKAAEGVAGSHLEEVKRMVVEYRAPLVKIDGA 52
MECE G V+ +G G +DPL WGKA E + GSHL+EVKRMV EYR PLVKI+GA
Sbjct: 1 MECENGRVSANGMSGLCVAAPRADPLNWGKATEEMTGSHLDEVKRMVAEYRQPLVKIEGA 60
Query: 53 MLSXXXXXXXXXXXXXXXXXLDESARPRLEASREWVFESTMNGTDTYGVTTGFGGAAHRR 112
L LDESAR R++AS +WV S MNGTD+YGVTTGFG +HRR
Sbjct: 61 SLRIAQVAAVAAAGEARVE-LDESARERVKASSDWVMNSMMNGTDSYGVTTGFGATSHRR 119
Query: 113 TKEFAALQKELIRYLNAGVFGASRSDGYTLPTEVTRAAMLVRINTLTQGYSGIRFEILEA 172
TKE ALQ+ELIR+LNAG FG +DG+ LP E TRAAMLVRINTL QGYSGIRFEILEA
Sbjct: 120 TKEGGALQRELIRFLNAGAFGTG-TDGHVLPAEATRAAMLVRINTLLQGYSGIRFEILEA 178
Query: 173 IAKLLNANVTPCLPLRGTITASGDLVPLSYIAGLITGRHNSAAVAPDGTKVDAAEAFRMA 232
IAKLLNANVTPCLPLRGTITASGDLVPLSYIAGL+TGR N+ AVAPDG+KV+AAEAF++A
Sbjct: 179 IAKLLNANVTPCLPLRGTITASGDLVPLSYIAGLVTGRENAVAVAPDGSKVNAAEAFKIA 238
Query: 233 GIEHGFFALQPKEGLAIVNGTAVGSGLAAIXXXXXXXXXXXXXXXXXXYCEVMAGNPEYT 292
GI+ GFF LQPKEGLA+VNGTAVGSGLA+ +CEVM G PEYT
Sbjct: 239 GIQGGFFELQPKEGLAMVNGTAVGSGLASTVLFEANILAILAEVLSAVFCEVMNGKPEYT 298
Query: 293 DHLIHALKHHPGQIEAAAIMEHILEGSSYMKKLAKDKEQGQGELDRLTKLKQDRYAIRTA 352
DHL H LKHHPGQIEAAAIMEHILEGSSYMK K GELD L K KQDRYA+RT+
Sbjct: 299 DHLTHKLKHHPGQIEAAAIMEHILEGSSYMKHAKK-----LGELDPLMKPKQDRYALRTS 353
Query: 353 PQWLGPQVEVIRFATKSIEREINSVNDNPVIDVARRKALHGGNFQGTPVGVSMDNTRLAI 412
PQWLGPQ+EVIR ATKSIEREINSVNDNP+IDV+R KALHGGNFQGTP+GVSMDNTRLAI
Sbjct: 354 PQWLGPQIEVIRAATKSIEREINSVNDNPLIDVSRGKALHGGNFQGTPIGVSMDNTRLAI 413
Query: 413 AAIGRLMFSQFSELVSSFYSNGLPSNLSGGRNPSLDYGFNGAEVAMASYCSELQFLANPV 472
AAIG+LMF+QFSELV+ FY+NGLPSNLSGGRNPSLDYGF GAE+AMASYCSELQFL NPV
Sbjct: 414 AAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLGNPV 473
Query: 473 TNHVQTAEQHNQSVNSLGLISSRMTAEAVTILKLMSSTFLIALCQAVDLRQLEESIKAAV 532
TNHVQ+AEQHNQ VNSLGLISSR T EA+ ILKLMSSTFLIALCQAVDLR +EE++K+AV
Sbjct: 474 TNHVQSAEQHNQDVNSLGLISSRKTDEAIDILKLMSSTFLIALCQAVDLRHIEENVKSAV 533
Query: 533 NKCVTNVAKKSXXXXXX----XXXXXXXXXXXXXXRVAVFTYAEDPCRSSLPLMQKLRAV 588
CV VAKK+ R AVF YA+DPC + PLM+KLR V
Sbjct: 534 KSCVMTVAKKTLSTNSTGDLHVARFCEKDLLKEIDREAVFAYADDPCSHNYPLMKKLRNV 593
Query: 589 LMEHALAN-----NGDI-LLAKVAEFEQQLRAVLPDEVEAARAAVESGTA--PNRISDCR 640
L+E ALAN N D + AKVA+FE++LRA LP +EAARAAVE+GTA P+RI++CR
Sbjct: 594 LVERALANGAAEFNADTSVFAKVAQFEEELRATLPGAIEAARAAVENGTAAIPSRITECR 653
Query: 641 SYPLYRFVRKELGAEYLTGEKTRSPGEEVDKVVIAMNQHKHIHPLLECLSEWKGAPLPL 699
SYPLYRFVR+ELG +YLTGEKTRSPGEE++KV++A+N+ KHI PLLECL EW G PLP+
Sbjct: 654 SYPLYRFVREELGTKYLTGEKTRSPGEELNKVLVAINEGKHIDPLLECLKEWNGEPLPI 712
>Os05g0427400 Similar to Phenylalanine ammonia-lyase (Fragment)
Length = 716
Score = 969 bits (2505), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 495/721 (68%), Positives = 560/721 (77%), Gaps = 28/721 (3%)
Query: 1 MECETGVNGSGPRG--------SDPLYWGKAAEGVAGSHLEEVKRMVVEYRAPLVKIDGA 52
MECETG + G +DPL WGKAAE +AGSHL+EVKRMV EYR P+V+I+GA
Sbjct: 1 MECETGYVAAAADGGLCMEVPRADPLNWGKAAEEMAGSHLDEVKRMVAEYRQPVVRIEGA 60
Query: 53 ML--SXXXXXXXXXXXXXXXXXLDESARPRLEASREWVFESTMNGTDTYGVTTGFGGAAH 110
L + LDESAR R++AS +WV S NGTD+YGVTTGFG +H
Sbjct: 61 SLRIAQVAAVAGAGDGEAAMVELDESARERVKASSDWVMNSMANGTDSYGVTTGFGATSH 120
Query: 111 RRTKEFAALQKELIRYLNAGVFGASRSDGYTLPTEVTRAAMLVRINTLTQGYSGIRFEIL 170
RRTKE ALQ+ELIR+LNAG FG +DG+ LP TRAAMLVRINTL QGYSGIRFEIL
Sbjct: 121 RRTKEGGALQRELIRFLNAGAFGTG-ADGHVLPAGATRAAMLVRINTLLQGYSGIRFEIL 179
Query: 171 EAIAKLLNANVTPCLPLRGTITASGDLVPLSYIAGLITGRHNSAAVAPDGTKVDAAEAFR 230
EA+AKLLNANVTPCLPLRGTITASGDLVPLSYIAGL+TGR NS AVAPDG KV+AAEAF+
Sbjct: 180 EAVAKLLNANVTPCLPLRGTITASGDLVPLSYIAGLVTGRENSVAVAPDGRKVNAAEAFK 239
Query: 231 MAGIEHGFFALQPKEGLAIVNGTAVGSGLAAIXXXXXXXXXXXXXXXXXXYCEVMAGNPE 290
+AGI+ GFF LQPKEGLA+VNGTAVGSGLA+ +CEVM G PE
Sbjct: 240 IAGIQGGFFELQPKEGLAMVNGTAVGSGLASTVLFEANVLAILAEVLSAVFCEVMNGKPE 299
Query: 291 YTDHLIHALKHHPGQIEAAAIMEHILEGSSYMKKLAKDKEQGQGELDRLTKLKQDRYAIR 350
YTDHL H LKHHPGQIEAAAIMEHILEGSSYMK+ + GELD L K KQDRYA+R
Sbjct: 300 YTDHLTHKLKHHPGQIEAAAIMEHILEGSSYMKEAKR-----LGELDPLMKPKQDRYALR 354
Query: 351 TAPQWLGPQVEVIRFATKSIEREINSVNDNPVIDVARRKALHGGNFQGTPVGVSMDNTRL 410
T+PQWLGPQ+EVIR ATKSIEREINSVNDNP+IDV+R KALHGGNFQGTP+GVSMDNTRL
Sbjct: 355 TSPQWLGPQIEVIRAATKSIEREINSVNDNPLIDVSRGKALHGGNFQGTPIGVSMDNTRL 414
Query: 411 AIAAIGRLMFSQFSELVSSFYSNGLPSNLSGGRNPSLDYGFNGAEVAMASYCSELQFLAN 470
AIAAIG+LMF+QFSELV+ FY+NGLPSNLSGGRNPSLDYGF GAE+AMASYCSELQFL N
Sbjct: 415 AIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLGN 474
Query: 471 PVTNHVQTAEQHNQSVNSLGLISSRMTAEAVTILKLMSSTFLIALCQAVDLRQLEESIKA 530
PVTNHVQ+AEQHNQ VNSLGLISSR TAEA+ ILKLMSSTFL+ALCQA+DLR +EE++K
Sbjct: 475 PVTNHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHIEENVKG 534
Query: 531 AVNKCVTNVAKKSXXXXXX----XXXXXXXXXXXXXXRVAVFTYAEDPCRSSLPLMQKLR 586
AV CV VAKK+ R AVF YA+DPC ++ PLM+KLR
Sbjct: 535 AVKTCVMTVAKKTLSTNSTGGLHVARFCEKDLLSEIDREAVFAYADDPCSANYPLMKKLR 594
Query: 587 AVLMEHALANNG------DILLAKVAEFEQQLRAVLPDEVEAARAAVESGT--APNRISD 638
+VL+E ALAN +LAKVA FE++LRA LP VEAARAAVESGT APNRI++
Sbjct: 595 SVLVERALANGAAEFDAETSVLAKVARFEEELRAALPRAVEAARAAVESGTAAAPNRIAE 654
Query: 639 CRSYPLYRFVRKELGAEYLTGEKTRSPGEEVDKVVIAMNQHKHIHPLLECLSEWKGAPLP 698
CRSYPLYRFVR+ELG YLTGEKTRSPGEE++KV++A+NQ KHI PLLECL EW GAPLP
Sbjct: 655 CRSYPLYRFVREELGTAYLTGEKTRSPGEELNKVLVAINQGKHIDPLLECLKEWNGAPLP 714
Query: 699 L 699
+
Sbjct: 715 I 715
>Os02g0626600 Phenylalanine ammonia-lyase family protein
Length = 713
Score = 961 bits (2483), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/720 (69%), Positives = 565/720 (78%), Gaps = 29/720 (4%)
Query: 1 MECETG------VNG---SGPRGSDPLYWGKAAEGVAGSHLEEVKRMVVEYRAPLVKIDG 51
M CE G +NG + PR +DPL WGKAAE ++GSHL+EVKRMV EYR PLVKI+G
Sbjct: 1 MACENGQVAADGINGLCMAAPR-ADPLNWGKAAEEMSGSHLDEVKRMVAEYRQPLVKIEG 59
Query: 52 AMLSXXXXXXXXXXXXXXXXXLDESARPRLEASREWVFESTMNGTDTYGVTTGFGGAAHR 111
A L LDESAR R++AS +WV S MNGTD+YGVTTGFG +HR
Sbjct: 60 ASLRIAQVAAVAAAGEARVE-LDESARERVKASSDWVMNSMMNGTDSYGVTTGFGATSHR 118
Query: 112 RTKEFAALQKELIRYLNAGVFGASRSDGYTLPTEVTRAAMLVRINTLTQGYSGIRFEILE 171
RTKE ALQ+ELIR+LNAG FG +DG+ L E TRAAMLVRINTL QGYSGIRFEILE
Sbjct: 119 RTKEGGALQRELIRFLNAGAFGTG-TDGHVLSAEATRAAMLVRINTLLQGYSGIRFEILE 177
Query: 172 AIAKLLNANVTPCLPLRGTITASGDLVPLSYIAGLITGRHNSAAVAPDGTKVDAAEAFRM 231
AI KLLNANVTPCLPLRGT+TASGDLVPLSYIAGL+TGR NS AVAPDG+KV+AAEAF++
Sbjct: 178 AITKLLNANVTPCLPLRGTVTASGDLVPLSYIAGLVTGRENSVAVAPDGSKVNAAEAFKI 237
Query: 232 AGIEHGFFALQPKEGLAIVNGTAVGSGLAAIXXXXXXXXXXXXXXXXXXYCEVMAGNPEY 291
AGI+ GFF LQPKEGLA+VNGTAVGSGLA+ +CEVM G PEY
Sbjct: 238 AGIQGGFFELQPKEGLAMVNGTAVGSGLASTVLFEANILAVLAEVLSAVFCEVMNGKPEY 297
Query: 292 TDHLIHALKHHPGQIEAAAIMEHILEGSSYMKKLAKDKEQGQGELDRLTKLKQDRYAIRT 351
TDHL H LKHHPGQIEAAAIMEHILEGSSYMK LAK GELD L K KQDRYA+RT
Sbjct: 298 TDHLTHKLKHHPGQIEAAAIMEHILEGSSYMK-LAKK----LGELDPLMKPKQDRYALRT 352
Query: 352 APQWLGPQVEVIRFATKSIEREINSVNDNPVIDVARRKALHGGNFQGTPVGVSMDNTRLA 411
+PQWLGPQ+EVIR ATKSIEREINSVNDNP+IDV+R KALHGGNFQGTP+GVSMDNTRLA
Sbjct: 353 SPQWLGPQIEVIRAATKSIEREINSVNDNPLIDVSRDKALHGGNFQGTPIGVSMDNTRLA 412
Query: 412 IAAIGRLMFSQFSELVSSFYSNGLPSNLSGGRNPSLDYGFNGAEVAMASYCSELQFLANP 471
IAAIG+LMF+QFSELV+ +Y+NGLPSNLSGGRNPSLDYGF GAE+AMASYCSELQFL NP
Sbjct: 413 IAAIGKLMFAQFSELVNDYYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLGNP 472
Query: 472 VTNHVQTAEQHNQSVNSLGLISSRMTAEAVTILKLMSSTFLIALCQAVDLRQLEESIKAA 531
VTNHVQ+AEQHNQ VNSLGLISSR TAEAV ILKLMSSTFL+ALCQA+DLRQ+EE++K+A
Sbjct: 473 VTNHVQSAEQHNQDVNSLGLISSRKTAEAVEILKLMSSTFLVALCQAIDLRQIEENVKSA 532
Query: 532 VNKCVTNVAKKSXXXXXX----XXXXXXXXXXXXXXRVAVFTYAEDPCRSSLPLMQKLRA 587
V CV VA+K+ R AVF YA+DPC ++ PLM+KLR
Sbjct: 533 VKSCVMTVARKTLSTSATGGLHAARFCEKDLLQEIDREAVFAYADDPCSANYPLMKKLRN 592
Query: 588 VLMEHALAN-----NGDI-LLAKVAEFEQQLRAVLPDEVEAARAAVESGTA--PNRISDC 639
VL+E ALAN N + + AKVA+FE++LRA LP V AARAAVE+GTA PNRI++C
Sbjct: 593 VLVERALANGAAEFNAETSVFAKVAQFEEELRAALPAAVLAARAAVENGTAATPNRITEC 652
Query: 640 RSYPLYRFVRKELGAEYLTGEKTRSPGEEVDKVVIAMNQHKHIHPLLECLSEWKGAPLPL 699
RSYPLYRFVR+ELG YLTGEKTRSPGEE++KV++A+NQ KHI PLLECL EW GAPLP+
Sbjct: 653 RSYPLYRFVREELGTAYLTGEKTRSPGEELNKVLVAINQGKHIDPLLECLKEWNGAPLPI 712
>Os02g0626100 Similar to Phenylalanine ammonia-lyase
Length = 701
Score = 910 bits (2351), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 454/706 (64%), Positives = 531/706 (75%), Gaps = 21/706 (2%)
Query: 9 GSGP-RGSDPLYWGKAAEGVAGSHLEEVKRMVVEYRAPLVKIDGAML--SXXXXXXXXXX 65
G+GP DPL WG AA +AGSHL+EVKRMV ++R PLVKI GA L
Sbjct: 3 GNGPINKEDPLNWGAAAAEMAGSHLDEVKRMVAQFREPLVKIQGATLRVGQVAAVAQAKD 62
Query: 66 XXXXXXXLDESARPRLEASREWVFESTMNGTDTYGVTTGFGGAAHRRTKEFAALQKELIR 125
LDE ARPR++AS EW+ +G D YGVTTGFGG +HRRTK+ ALQ EL+R
Sbjct: 63 AAGVAVELDEEARPRVKASSEWILNCIAHGGDIYGVTTGFGGTSHRRTKDGPALQVELLR 122
Query: 126 YLNAGVFGASRSDGYTLPTEVTRAAMLVRINTLTQGYSGIRFEILEAIAKLLNANVTPCL 185
+LNAG+FG SDG+TLP+E RAAMLVRINTL QGYSGIRFEILEAI KLLN VTPCL
Sbjct: 123 HLNAGIFGTG-SDGHTLPSETVRAAMLVRINTLLQGYSGIRFEILEAITKLLNTGVTPCL 181
Query: 186 PLRGTITASGDLVPLSYIAGLITGRHNSAAVAPDGTKVDAAEAFRMAGIEHGFFALQPKE 245
PLRGTITASGDLVPLSYIAGLITGR N+ A++PDG KVDAAEAF++AGIE GFF L PKE
Sbjct: 182 PLRGTITASGDLVPLSYIAGLITGRPNAQAISPDGRKVDAAEAFKLAGIEGGFFTLNPKE 241
Query: 246 GLAIVNGTAVGSGLAAIXXXXXXXXXXXXXXXXXXYCEVMAGNPEYTDHLIHALKHHPGQ 305
GLAIVNGT+VGS LAA +CEVM G PEYTDHL H LKHHPG
Sbjct: 242 GLAIVNGTSVGSALAATVMFDANILAVLSEVLSAVFCEVMNGKPEYTDHLTHKLKHHPGS 301
Query: 306 IEAAAIMEHILEGSSYMKKLAKDKEQGQGELDRLTKLKQDRYAIRTAPQWLGPQVEVIRF 365
IEAAAIMEHIL GSS+M K E+D L K KQDRYA+RT+PQWLGPQ+EVIR
Sbjct: 302 IEAAAIMEHILAGSSFMSHAKK-----VNEMDPLLKPKQDRYALRTSPQWLGPQIEVIRA 356
Query: 366 ATKSIEREINSVNDNPVIDVARRKALHGGNFQGTPVGVSMDNTRLAIAAIGRLMFSQFSE 425
ATKSIERE+NSVNDNPVIDV R KALHGGNFQGTP+GVSMDN RLAIA IG+LMF+QFSE
Sbjct: 357 ATKSIEREVNSVNDNPVIDVHRGKALHGGNFQGTPIGVSMDNARLAIANIGKLMFAQFSE 416
Query: 426 LVSSFYSNGLPSNLSGGRNPSLDYGFNGAEVAMASYCSELQFLANPVTNHVQTAEQHNQS 485
LV+ FY+NGL SNL+G RNPSLDYGF G E+AMASYCSELQ+LANP+TNHVQ+AEQHNQ
Sbjct: 417 LVNEFYNNGLTSNLAGSRNPSLDYGFKGTEIAMASYCSELQYLANPITNHVQSAEQHNQD 476
Query: 486 VNSLGLISSRMTAEAVTILKLMSSTFLIALCQAVDLRQLEESIKAAVNKCVTNVAKK--- 542
VNSLGL+S+R T EAV ILKLM+ST+++ALCQAVDLR LEE+IK++V CVT VAKK
Sbjct: 477 VNSLGLVSARKTLEAVDILKLMTSTYIVALCQAVDLRHLEENIKSSVKNCVTQVAKKVLT 536
Query: 543 -SXXXXXXXXXXXXXXXXXXXXRVAVFTYAEDPCRSSLPLMQKLRAVLMEHALANNGDI- 600
+ R AVF+YA+DPC ++ PLMQKLRAVL+EHAL +GD
Sbjct: 537 MNPTGDLSSARFSEKNLLTAIDREAVFSYADDPCSANYPLMQKLRAVLVEHAL-TSGDAE 595
Query: 601 ----LLAKVAEFEQQLRAVLPDEVEAARAAVESGTAP--NRISDCRSYPLYRFVRKELGA 654
+ +K+ +FE++LR+ LP E+EAAR AV +GTAP NRI + RS+PLYRFVR+ELG
Sbjct: 596 PEASVFSKITKFEEELRSALPREIEAARVAVANGTAPVANRIVESRSFPLYRFVREELGC 655
Query: 655 EYLTGEKTRSPGEEVDKVVIAMNQHKHIHPLLECLSEWKGAPLPLS 700
+LTGEK +SPGEE +KV + ++Q K I P+L+CL EW G PLP++
Sbjct: 656 VFLTGEKLKSPGEECNKVFLGISQGKLIDPMLDCLKEWNGEPLPIN 701
>Os04g0518200 Phenylalanine ammonia-lyase
Length = 707
Score = 905 bits (2340), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/706 (64%), Positives = 531/706 (75%), Gaps = 20/706 (2%)
Query: 8 NGSGPRGSDPLYWGKAAEGVAGSHLEEVKRMVVEYRAPLVKIDGAML--SXXXXXXXXXX 65
+ +G SDPL WGKAA + GSHL+EVKRMV + R +VKI+G+ L
Sbjct: 7 DATGFVASDPLSWGKAALEMTGSHLDEVKRMVAQSREAVVKIEGSSLRVGQVAAVSAAKD 66
Query: 66 XXXXXXXLDESARPRLEASREWVFESTMNGTDTYGVTTGFGGAAHRRTKEFAALQKELIR 125
LDE ARPR++AS EW+ +G D YGVTTGFGG +HRRTK+ ALQ EL+R
Sbjct: 67 ASGVVVELDEEARPRVKASSEWILNCIAHGGDIYGVTTGFGGTSHRRTKDGQALQVELLR 126
Query: 126 YLNAGVFGASRSDGYTLPTEVTRAAMLVRINTLTQGYSGIRFEILEAIAKLLNANVTPCL 185
+LNAG+FG + SDG +LP+EV+RAAMLVRINTL QGYSGIRFEILEAI KL+N V+PCL
Sbjct: 127 HLNAGIFG-NGSDGNSLPSEVSRAAMLVRINTLLQGYSGIRFEILEAITKLINTGVSPCL 185
Query: 186 PLRGTITASGDLVPLSYIAGLITGRHNSAAVAPDGTKVDAAEAFRMAGIEHGFFALQPKE 245
PLRGTITASGDLVPLSYIAGLITGR N+ AV DG KVDAAEAF++AGI+ GFF L+PKE
Sbjct: 186 PLRGTITASGDLVPLSYIAGLITGRPNAQAVTVDGKKVDAAEAFKIAGIQGGFFRLEPKE 245
Query: 246 GLAIVNGTAVGSGLAAIXXXXXXXXXXXXXXXXXXYCEVMAGNPEYTDHLIHALKHHPGQ 305
GLAIVNGT+VGS LAA+ +CEVM G PEYTDHL H LKHHPG
Sbjct: 246 GLAIVNGTSVGSALAAMVLYDANVLAVLSEVLSAVFCEVMNGKPEYTDHLTHKLKHHPGS 305
Query: 306 IEAAAIMEHILEGSSYMKKLAKDKEQGQGELDRLTKLKQDRYAIRTAPQWLGPQVEVIRF 365
IEAAAIMEHIL GS++M Q E+D L K KQDRYA+RT+PQWLGPQ+EVIR
Sbjct: 306 IEAAAIMEHILAGSAFMPH-----AQKVNEVDPLLKPKQDRYALRTSPQWLGPQIEVIRA 360
Query: 366 ATKSIEREINSVNDNPVIDVARRKALHGGNFQGTPVGVSMDNTRLAIAAIGRLMFSQFSE 425
ATKSIERE+NSVNDNPVIDV R KALHGGNFQGTP+GVSMDNTRLAIA IG+LMF+QFSE
Sbjct: 361 ATKSIEREVNSVNDNPVIDVHRGKALHGGNFQGTPIGVSMDNTRLAIANIGKLMFAQFSE 420
Query: 426 LVSSFYSNGLPSNLSGGRNPSLDYGFNGAEVAMASYCSELQFLANPVTNHVQTAEQHNQS 485
LV+ FY+NGL SNL+G RNPSLDYGF G E+AMASYCSELQFLANPVTNHVQ+AEQHNQ
Sbjct: 421 LVNEFYNNGLTSNLAGSRNPSLDYGFKGTEIAMASYCSELQFLANPVTNHVQSAEQHNQD 480
Query: 486 VNSLGLISSRMTAEAVTILKLMSSTFLIALCQAVDLRQLEESIKAAVNKCVTNVAKKSXX 545
VNSLGL+S+R TAEAV ILKLMSST+L+ALCQAVDLR LEE++K+AV CVT VAKK
Sbjct: 481 VNSLGLVSARKTAEAVDILKLMSSTYLVALCQAVDLRHLEENLKSAVKNCVTTVAKKVLT 540
Query: 546 XXXX----XXXXXXXXXXXXXXRVAVFTYAEDPCRSSLPLMQKLRAVLMEHALAN----- 596
R AV++YA+DPC ++ PLM K+RAVL+EHALAN
Sbjct: 541 TGPAGGLHSARFSEKALLTAIDREAVYSYADDPCSANYPLMTKIRAVLVEHALANGPAEK 600
Query: 597 -NGDILLAKVAEFEQQLRAVLPDEVEAARAAVESGTAP--NRISDCRSYPLYRFVRKELG 653
+G + +K+ FE++LR LP E+EAAR A E+GTAP NRI + RS+PLYRFVR+ELG
Sbjct: 601 DDGSSVFSKITAFEEELREALPREMEAARVAFETGTAPITNRIKESRSFPLYRFVREELG 660
Query: 654 AEYLTGEKTRSPGEEVDKVVIAMNQHKHIHPLLECLSEWKGAPLPL 699
YLTGEK +SPGEE +KV +A+++ K I P+LECL EW G PLP+
Sbjct: 661 CVYLTGEKLKSPGEECNKVFLAISERKLIDPMLECLKEWNGEPLPI 706
>Os12g0461300
Length = 128
Score = 156 bits (394), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 82/127 (64%), Positives = 96/127 (75%), Gaps = 9/127 (7%)
Query: 582 MQKLRAVLMEHALAN-----NGDI-LLAKVAEFEQQLRAVLP-DEVEAARAAVESGTAP- 633
MQK+R++L+EH LAN N D + AKVA FE++LR LP +E RAAVE+GTA
Sbjct: 1 MQKMRSILIEHGLANGEAERNVDTSVFAKVATFEEELRVALPREERRLPRAAVENGTAAK 60
Query: 634 -NRISDCRSYPLYRFVRKELGAEYLTGEKTRSPGEEVDKVVIAMNQHKHIHPLLECLSEW 692
NRI++CRSYPLYR VRKELG EYLTGEKTRSPGEEV+KV +AMN KHI LLECL EW
Sbjct: 61 ANRITECRSYPLYRSVRKELGTEYLTGEKTRSPGEEVNKVSVAMNLGKHIDALLECLKEW 120
Query: 693 KGAPLPL 699
G PLP+
Sbjct: 121 NGEPLPI 127
>Os08g0308200
Length = 153
Score = 106 bits (264), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 57/92 (61%), Positives = 68/92 (73%), Gaps = 8/92 (8%)
Query: 578 SLPLMQKLRAVLMEHALANN------GDILLAKVAEFEQQLRAVLPDEVEAARAAVESGT 631
S LMQK+R VL+EHALAN+ + AKVA FE++LRA LP EVEA RAAVE+GT
Sbjct: 56 SRTLMQKMRTVLIEHALANSEAERNVNTSVFAKVAMFEEKLRAALPREVEATRAAVENGT 115
Query: 632 A--PNRISDCRSYPLYRFVRKELGAEYLTGEK 661
A NRI++C+SY LYRFV KEL EYLTG+K
Sbjct: 116 AAKANRITECKSYSLYRFVCKELRTEYLTGKK 147
>Os08g0308300
Length = 111
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/86 (60%), Positives = 60/86 (69%), Gaps = 17/86 (19%)
Query: 582 MQKLRAVLMEHALAN-----NGDI-LLAKVAEFEQQLRAVLPDEVEAARAAVESGTAPNR 635
MQK+R VL+EHALAN N +I + AKVA FE++LRA LP EVEA P
Sbjct: 1 MQKMRTVLIEHALANSEAERNVNISVFAKVAMFEEELRAALPREVEAT---------P-- 49
Query: 636 ISDCRSYPLYRFVRKELGAEYLTGEK 661
I++CRSY LYRFVRKELG EYLTGEK
Sbjct: 50 ITECRSYSLYRFVRKELGIEYLTGEK 75
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.132 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 20,986,884
Number of extensions: 800713
Number of successful extensions: 1895
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 1840
Number of HSP's successfully gapped: 11
Length of query: 700
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 592
Effective length of database: 11,396,689
Effective search space: 6746839888
Effective search space used: 6746839888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 160 (66.2 bits)