FiT-DB / Search/ Help/ Sample detail

Os02g0627100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Phenylalanine ammonia-lyase (EC 4.3.1.5).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.6 (0.0684) R2 : 0.646
β1 : -1.87 (0.356) R2dD : 0.0531 R2D : -0.0683
β2 : 3.49 (0.162) R2dC : 0.364 R2C : 0.351
β3 : -1.85 (0.277) R2dE : 0.0427 R2E : 0.0785
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 8.28 (1.18) R2dD*E : 0.097 R2D*E : 0.0203
γ1 : 1.33 (0.155) R2dN8 : 0.103 R2N8 : 0.177
σ : 1.17
deviance : 632.61
__
_____
C
peak time of C : 7.15
E
wheather : radiation
threshold : 1.38
memory length : 4337
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 22.8
open length of G : 8.03

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
623.37 1.17 8.6 -1.91 3.49 -1.81 1.88 8.25 1.33 7.19 1.367 4336 22.8 8.05
684.82 1.22 8.61 -0.449 3.45 -2.92 1.99 -- 1.32 7.15 0.9854 4343 23.4 8.58
632.61 1.17 8.6 -1.87 3.49 -1.85 -- 8.28 1.33 7.15 1.38 4337 22.8 8.03
686.4 1.22 8.61 -0.674 3.49 -3.17 -- -- 1.3 7.17 0.7801 4347 23.5 10.9
1278.24 1.67 8.61 -1.91 -- -1.72 -- 8.23 1.46 -- 1.357 4326 22.8 8.03
769.45 1.3 8.33 0.439 3.44 -- 1.97 -- 2.15 7.29 -- -- -- --
779.94 1.31 8.34 0.482 3.45 -- -- -- 2.15 7.29 -- -- -- --
1305.18 1.68 8.6 -0.359 -- -2.91 -- -- 1.68 -- 0.3832 4311 23.4 11.4
692.84 1.23 8.61 -- 3.63 -3.15 -- -- 1.31 6.83 0.5463 4388 22.7 12.1
1410.25 1.75 8.42 0.542 -- -- -- -- 2.2 -- -- -- -- --
786.06 1.31 8.35 -- 3.45 -- -- -- 2.09 7.28 -- -- -- --
1300.81 1.68 8.6 -- -- -2.85 -- -- 1.74 -- 0.3879 4299 0.35 11.3
1417.99 1.76 8.43 -- -- -- -- -- 2.14 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 627.89 radiation 1 4320 > th dose independent rect. 18 13
2 631.87 radiation 1 4320 < th dose dependent rect. 23 8
6 632.17 radiation 1 4320 < th dose dependent rect. 19 12
9 632.22 radiation 1 4320 < th dose dependent rect. 4 3
11 632.27 humidity 90 14400 > th dose independent rect. 23 8
32 635.34 radiation 1 4320 < th dose independent rect. 18 13
33 635.54 humidity 90 14400 > th dose dependent rect. 23 9
34 635.60 atmosphere 1015 43200 > th dose dependent rect. 19 1
37 635.73 humidity 90 14400 > th dose dependent rect. 3 5
47 636.25 wind 1 43200 > th dose independent rect. 2 1
50 636.27 atmosphere 1015 43200 > th dose dependent rect. 15 1
56 636.45 atmosphere 1015 43200 > th dose independent rect. 17 3
82 637.11 humidity 90 14400 > th dose dependent rect. 4 3
92 637.39 atmosphere 1015 43200 > th dose independent rect. 15 1
102 637.41 atmosphere 1015 43200 < th dose independent rect. 18 1
103 637.43 atmosphere 1015 43200 < th dose independent rect. 15 1
108 637.64 humidity 90 14400 > th dose dependent rect. 5 1
109 637.70 atmosphere 1015 43200 < th dose independent rect. 15 4
123 638.36 humidity 90 14400 > th dose dependent rect. 23 3
126 638.69 humidity 90 14400 > th dose dependent rect. 24 1
130 638.89 radiation 1 4320 < th dose independent rect. 5 2
137 639.05 radiation 1 4320 < th dose independent rect. 18 15
144 639.15 radiation 1 4320 > th dose independent rect. 5 2
146 639.16 humidity 90 14400 > th dose dependent rect. 22 5
174 640.68 humidity 90 14400 > th dose dependent sin 8 NA
180 640.86 radiation 1 43200 < th dose independent rect. 18 11
189 641.20 radiation 1 43200 < th dose independent rect. 18 8
194 641.25 radiation 1 43200 < th dose independent rect. 18 2
199 641.31 radiation 1 43200 > th dose independent rect. 18 1
225 641.90 atmosphere 1015 43200 > th dose dependent rect. 1 1
231 642.18 temperature 20 270 > th dose dependent rect. 14 21
233 642.28 radiation 1 4320 < th dose dependent sin 9 NA
235 642.30 humidity 80 43200 > th dose dependent rect. 5 10
242 642.54 humidity 90 14400 > th dose dependent rect. 16 14
249 642.71 humidity 90 43200 < th dose independent rect. 5 6
261 642.92 atmosphere 1015 43200 < th dose independent rect. 11 3
270 643.10 atmosphere 1015 43200 > th dose independent rect. 11 3
277 643.15 humidity 90 14400 < th dose independent rect. 22 6
283 643.30 humidity 90 43200 > th dose independent rect. 5 6
285 643.34 atmosphere 1015 43200 < th dose independent rect. 10 5
298 643.69 atmosphere 1015 43200 > th dose independent rect. 10 5
301 643.74 radiation 1 4320 < th dose independent rect. 5 4
308 643.91 radiation 1 4320 > th dose independent rect. 5 4
316 644.12 humidity 90 43200 < th dose independent rect. 5 10
317 644.13 humidity 90 43200 > th dose dependent rect. 5 6
324 644.31 humidity 90 43200 > th dose independent rect. 4 10
327 644.33 radiation 1 4320 > th dose independent sin 10 NA
388 645.37 humidity 90 14400 > th dose independent rect. 23 1
400 645.45 humidity 90 14400 > th dose independent rect. 3 4
402 645.50 atmosphere 1015 43200 < th dose independent rect. 13 1
403 645.58 humidity 90 43200 > th dose independent rect. 9 1
422 645.80 humidity 90 43200 < th dose independent rect. 8 2
432 646.13 humidity 80 43200 < th dose independent rect. 12 1
434 646.18 radiation 30 14400 < th dose independent rect. 20 11
441 646.28 humidity 90 14400 > th dose independent sin 10 NA
442 646.28 radiation 1 4320 < th dose independent sin 10 NA
448 646.32 radiation 1 4320 < th dose independent rect. 23 8
451 646.36 radiation 1 43200 > th dose independent rect. 6 1
453 646.39 radiation 1 43200 < th dose independent rect. 6 1
459 646.48 radiation 1 43200 < th dose independent rect. 18 20
485 646.81 humidity 90 43200 > th dose dependent rect. 8 1
492 646.98 radiation 1 43200 > th dose independent rect. 18 20
516 647.08 radiation 1 43200 < th dose independent rect. 18 17
520 647.10 radiation 1 43200 < th dose dependent rect. 4 10
525 647.13 wind 1 43200 < th dose independent rect. 2 1
540 647.21 humidity 90 43200 > th dose independent rect. 5 2
543 647.22 radiation 1 43200 < th dose independent rect. 6 20
548 647.24 radiation 1 43200 < th dose independent rect. 6 13
605 647.57 radiation 1 43200 < th dose dependent sin 5 NA
607 647.58 radiation 1 43200 > th dose independent rect. 6 13
613 647.58 radiation 1 43200 > th dose independent rect. 18 17
636 647.65 radiation 1 43200 < th dose independent sin 2 NA
647 647.69 radiation 1 43200 < th dose independent rect. 24 14
655 647.71 radiation 1 43200 < th dose independent rect. 5 9
659 647.72 radiation 1 43200 > th dose independent rect. 5 9
685 647.81 radiation 1 43200 > th dose independent sin 2 NA
828 648.04 radiation 1 43200 < th dose dependent rect. 6 23
848 648.09 humidity 90 43200 > th dose dependent sin 1 NA
888 648.21 radiation 1 43200 < th dose dependent rect. 6 19
916 648.32 humidity 90 14400 < th dose independent rect. 23 2
966 648.39 radiation 1 43200 < th dose dependent rect. 4 21
974 648.40 radiation 1 43200 < th dose dependent no NA NA