Os12g0520200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Phenylalanine/histidine ammonia-lyase family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os12g0520200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Phenylalanine/histidine ammonia-lyase family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 598.8 | 1.15 | 10 | -13.4 | 2.31 | -6.97 | 1.71 | -19.3 | -2.81 | 7.86 | 1.055 | 12955 | -- | -- |
| 1202.3 | 1.61 | 9.44 | -12.1 | 1.38 | -5.28 | 1.65 | -- | -2.33 | 7.43 | 6.401 | 11148 | -- | -- |
| 607.3 | 1.15 | 10 | -13.3 | 2.31 | -6.97 | -- | -19.3 | -2.81 | 7.86 | 1.055 | 12955 | -- | -- |
| 1025.37 | 1.49 | 9.32 | -11.1 | 1.52 | -4.48 | -- | -- | -1.8 | 8.17 | 3.382 | 12530 | -- | -- |
| 667.37 | 1.2 | 10 | -13.1 | -- | -6.99 | -- | -19.4 | -2.84 | -- | 1.15 | 15363 | -- | -- |
| 1550.87 | 1.85 | 9.72 | -10.5 | 2.31 | -- | 1.68 | -- | -3.21 | 8.41 | -- | -- | -- | -- |
| 1559.75 | 1.85 | 9.72 | -10.4 | 2.31 | -- | -- | -- | -3.21 | 8.37 | -- | -- | -- | -- |
| 985.41 | 1.46 | 9.39 | -9.73 | -- | -5.53 | -- | -- | -1.23 | -- | 2.75 | 13907 | -- | -- |
| 1405.2 | 1.75 | 8.88 | -- | 1.83 | -9.35 | -- | -- | 0.595 | 7.33 | 0.6889 | 28631 | -- | -- |
| 1856.97 | 2.01 | 9.78 | -10.4 | -- | -- | -- | -- | -3.19 | -- | -- | -- | -- | -- |
| 4410.64 | 3.11 | 9.46 | -- | 2.27 | -- | -- | -- | -2.05 | 8.7 | -- | -- | -- | -- |
| 1015.43 | 1.48 | 8.79 | -- | -- | -9.64 | -- | -- | 1.21 | -- | 0.6867 | 47520 | -- | -- |
| 4702.89 | 3.2 | 9.52 | -- | -- | -- | -- | -- | -2.04 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 498.37 | temperature | 20 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 8 | 503.75 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 13 |
| 9 | 503.77 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 17 |
| 10 | 503.79 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 23 |
| 16 | 503.93 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 21 |
| 23 | 506.38 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 23 |
| 24 | 506.91 | temperature | 20 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 31 | 508.16 | temperature | 25 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 33 | 508.35 | temperature | 25 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 34 | 508.73 | radiation | 1 | 43200 | < th | dose dependent | sin | 23 | NA |
| 38 | 509.25 | temperature | 20 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 100 | 514.10 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 15 |
| 102 | 514.11 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 19 |
| 103 | 514.13 | radiation | 1 | 43200 | < th | dose dependent | rect. | 2 | 17 |
| 104 | 514.13 | radiation | 1 | 43200 | < th | dose dependent | rect. | 2 | 21 |
| 115 | 514.21 | temperature | 20 | 43200 | < th | dose independent | rect. | 1 | 15 |
| 135 | 514.36 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 22 |
| 147 | 514.44 | radiation | 1 | 43200 | < th | dose dependent | no | NA | NA |
| 163 | 514.70 | temperature | 20 | 43200 | > th | dose independent | rect. | 1 | 15 |
| 181 | 514.98 | radiation | 1 | 43200 | < th | dose dependent | rect. | 10 | 23 |
| 192 | 515.22 | radiation | 1 | 43200 | < th | dose dependent | rect. | 12 | 23 |
| 207 | 515.45 | temperature | 20 | 43200 | < th | dose independent | sin | 4 | NA |
| 211 | 515.47 | temperature | 20 | 43200 | < th | dose independent | rect. | 3 | 9 |
| 245 | 515.99 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 11 |
| 250 | 516.04 | radiation | 1 | 43200 | < th | dose dependent | rect. | 2 | 13 |
| 271 | 516.33 | temperature | 20 | 43200 | > th | dose independent | sin | 5 | NA |
| 308 | 516.88 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 18 |
| 425 | 518.57 | temperature | 25 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 478 | 519.22 | temperature | 25 | 43200 | < th | dose dependent | rect. | 17 | 8 |
| 480 | 519.24 | temperature | 25 | 43200 | < th | dose dependent | rect. | 17 | 10 |
| 512 | 519.73 | temperature | 25 | 43200 | < th | dose dependent | rect. | 13 | 14 |
| 525 | 519.85 | temperature | 20 | 43200 | < th | dose dependent | sin | 7 | NA |
| 570 | 520.25 | temperature | 25 | 43200 | < th | dose dependent | sin | 16 | NA |
| 660 | 521.09 | temperature | 25 | 43200 | < th | dose dependent | rect. | 23 | 2 |
| 778 | 522.32 | temperature | 25 | 43200 | < th | dose dependent | rect. | 17 | 22 |
| 783 | 522.41 | temperature | 25 | 43200 | < th | dose dependent | rect. | 13 | 23 |
| 786 | 522.46 | temperature | 20 | 43200 | < th | dose independent | rect. | 9 | 22 |
| 802 | 522.53 | temperature | 25 | 43200 | < th | dose dependent | rect. | 17 | 19 |
| 803 | 522.55 | temperature | 25 | 43200 | < th | dose dependent | no | NA | NA |
| 813 | 522.60 | temperature | 25 | 43200 | < th | dose dependent | rect. | 22 | 23 |
| 826 | 522.67 | temperature | 25 | 43200 | < th | dose dependent | rect. | 2 | 23 |
| 944 | 523.31 | temperature | 20 | 43200 | < th | dose independent | no | NA | NA |
| 952 | 523.36 | temperature | 20 | 43200 | < th | dose independent | rect. | 14 | 23 |