Os04g0518200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Phenylalanine ammonia-lyase.
FiT-DB / Search/ Help/ Sample detail
|
Os04g0518200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Phenylalanine ammonia-lyase.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 74.25 | 0.405 | 8.18 | -1.41 | 0.843 | -0.666 | -0.0254 | -0.021 | -0.441 | 4.79 | 12.59 | 15 | -- | -- |
| 74.26 | 0.401 | 8.18 | -1.41 | 0.843 | -0.666 | -0.0315 | -- | -0.44 | 4.79 | 12.59 | 14 | -- | -- |
| 74.26 | 0.401 | 8.18 | -1.41 | 0.843 | -0.666 | -- | -0.0248 | -0.441 | 4.79 | 12.59 | 14 | -- | -- |
| 74.26 | 0.401 | 8.18 | -1.41 | 0.843 | -0.667 | -- | -- | -0.441 | 4.79 | 12.59 | 14 | -- | -- |
| 106.51 | 0.483 | 8.18 | -1.38 | -- | -0.484 | -- | -0.0303 | -0.404 | -- | 8.109 | 9 | -- | -- |
| 81.3 | 0.423 | 8.16 | -1.4 | 0.946 | -- | 0.0277 | -- | -0.408 | 8 | -- | -- | -- | -- |
| 81.3 | 0.422 | 8.16 | -1.4 | 0.946 | -- | -- | -- | -0.408 | 8 | -- | -- | -- | -- |
| 106.52 | 0.483 | 8.18 | -1.38 | -- | -0.483 | -- | -- | -0.404 | -- | 8.006 | 6 | -- | -- |
| 125.58 | 0.522 | 8.15 | -- | 0.83 | -0.669 | -- | -- | -0.301 | 4.71 | 10 | 12 | -- | -- |
| 130.15 | 0.533 | 8.18 | -1.39 | -- | -- | -- | -- | -0.396 | -- | -- | -- | -- | -- |
| 133.23 | 0.54 | 8.12 | -- | 0.937 | -- | -- | -- | -0.252 | 8.11 | -- | -- | -- | -- |
| 156.38 | 0.582 | 8.15 | -- | -- | -0.507 | -- | -- | -0.249 | -- | 9.17 | 3 | -- | -- |
| 181.44 | 0.629 | 8.14 | -- | -- | -- | -- | -- | -0.242 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 65.63 | radiation | 10.0 | 10 | < th | dose dependent | sin | 4 | NA |
| 7 | 66.65 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 1 | 14 |
| 20 | 67.16 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 1 | 11 |
| 44 | 67.78 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 21 |
| 54 | 67.92 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 24 | 3 |
| 56 | 67.98 | radiation | 1.0 | 90 | < th | dose independent | rect. | 1 | 15 |
| 57 | 68.06 | radiation | 1.0 | 90 | < th | dose independent | rect. | 1 | 11 |
| 64 | 68.12 | radiation | 1.0 | 90 | < th | dose independent | rect. | 1 | 7 |
| 71 | 68.16 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 24 | 6 |
| 94 | 68.40 | humidity | 50.0 | 270 | > th | dose independent | rect. | 14 | 10 |
| 134 | 68.70 | radiation | 1.0 | 90 | < th | dose independent | sin | 5 | NA |
| 138 | 68.74 | radiation | 1.0 | 90 | > th | dose independent | sin | 5 | NA |
| 192 | 69.23 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 24 | 16 |
| 218 | 69.52 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 13 | 16 |
| 235 | 69.69 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 24 | 3 |
| 252 | 69.85 | temperature | 20.0 | 270 | > th | dose independent | rect. | 24 | 3 |
| 266 | 69.97 | temperature | 20.0 | 90 | > th | dose independent | rect. | 24 | 5 |
| 295 | 70.16 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 24 | 9 |
| 312 | 70.24 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 24 | 6 |
| 332 | 70.33 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 15 | 15 |
| 353 | 70.43 | temperature | 20.0 | 10 | > th | dose independent | rect. | 1 | 4 |
| 358 | 70.44 | humidity | 80.0 | 270 | > th | dose independent | rect. | 24 | 3 |
| 394 | 70.58 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 24 | 3 |
| 396 | 70.60 | radiation | 1.0 | 90 | > th | dose independent | rect. | 4 | 9 |
| 423 | 70.68 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 21 |
| 427 | 70.68 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 21 |
| 431 | 70.69 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 24 | 3 |
| 434 | 70.71 | humidity | 70.0 | 10 | > th | dose independent | rect. | 18 | 7 |
| 436 | 70.72 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 24 | 3 |
| 438 | 70.72 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 24 | 3 |
| 441 | 70.74 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 24 | 3 |
| 444 | 70.75 | temperature | 10.0 | 270 | > th | dose independent | rect. | 24 | 3 |
| 446 | 70.75 | temperature | 30.0 | 270 | < th | dose independent | rect. | 24 | 3 |
| 447 | 70.75 | humidity | 50.0 | 270 | > th | dose independent | rect. | 24 | 3 |
| 452 | 70.75 | radiation | 1.0 | 270 | < th | dose independent | rect. | 24 | 3 |
| 460 | 70.75 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 21 |
| 461 | 70.75 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 24 | 3 |
| 466 | 70.76 | wind | 9.0 | 270 | < th | dose independent | rect. | 24 | 3 |
| 473 | 70.79 | humidity | 70.0 | 90 | > th | dose independent | rect. | 17 | 8 |
| 532 | 71.00 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 21 |
| 555 | 71.08 | radiation | 30.0 | 1440 | < th | dose independent | rect. | 2 | 5 |
| 627 | 71.20 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 17 | 8 |
| 656 | 71.21 | temperature | 10.0 | 90 | > th | dose independent | rect. | 5 | 20 |
| 711 | 71.34 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 1 | 5 |
| 712 | 71.35 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 24 | 18 |
| 720 | 71.38 | wind | 9.0 | 90 | < th | dose independent | rect. | 5 | 20 |
| 723 | 71.39 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 1 |
| 777 | 71.50 | wind | 1.0 | 90 | > th | dose independent | rect. | 1 | 5 |
| 806 | 71.56 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 17 | 8 |
| 812 | 71.58 | radiation | 1.0 | 90 | < th | dose independent | rect. | 16 | 9 |
| 826 | 71.61 | wind | 1.0 | 270 | > th | dose independent | rect. | 24 | 3 |
| 830 | 71.62 | humidity | 80.0 | 10 | > th | dose dependent | sin | 5 | NA |
| 836 | 71.63 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 5 | 20 |
| 846 | 71.63 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 5 | 20 |
| 849 | 71.64 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 24 | 6 |
| 853 | 71.65 | wind | 9.0 | 90 | < th | dose independent | rect. | 24 | 6 |
| 854 | 71.65 | temperature | 10.0 | 90 | > th | dose independent | rect. | 24 | 6 |
| 856 | 71.65 | temperature | 30.0 | 90 | < th | dose independent | rect. | 24 | 6 |
| 857 | 71.65 | humidity | 50.0 | 90 | > th | dose independent | rect. | 24 | 6 |
| 866 | 71.65 | temperature | 10.0 | 90 | > th | dose independent | rect. | 6 | 18 |
| 900 | 71.70 | humidity | 70.0 | 10 | > th | dose independent | rect. | 16 | 9 |
| 901 | 71.70 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 24 | 15 |
| 935 | 71.72 | wind | 9.0 | 10 | < th | dose independent | rect. | 1 | 5 |
| 936 | 71.72 | temperature | 10.0 | 10 | > th | dose independent | rect. | 1 | 5 |
| 938 | 71.72 | temperature | 30.0 | 10 | < th | dose independent | rect. | 1 | 5 |
| 939 | 71.72 | humidity | 50.0 | 10 | > th | dose independent | rect. | 1 | 5 |
| 943 | 71.72 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 1 | 5 |
| 949 | 71.72 | temperature | 10.0 | 10 | > th | dose independent | rect. | 6 | 19 |
| 976 | 71.74 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 6 | 19 |
| 979 | 71.74 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 6 | 19 |