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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0708900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Phenylalanine ammonia-lyase (EC 4.3.1.5) (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.47 (0.0523) R2 : 0.897
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.01 (0.131) R2dC : 0.0468 R2C : 0.0486
β3 : 8.2 (0.143) R2dE : 0.906 R2E : 0.837
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.671 (0.117) R2dN8 : 0.0108 R2N8 : -0.0581
σ : 0.962
deviance : 426.47
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_____
C
peak time of C : 8.07
E
wheather : temperature
threshold : 21.67
memory length : 36349
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 7
open length of G : 3.2

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
438.08 0.983 4.93 -1.28 1.87 5.45 0.84 -10.2 0.789 8.18 25.3 26105 7.98 3.16
435.68 0.972 5.52 -2.07 1.85 6.71 1 -- 0.223 8.15 22.77 36342 6.9 3.38
438.86 0.976 4.93 -1.24 1.87 5.44 -- -10 0.79 8.14 25.24 26119 7.98 3.47
434.26 0.971 5.52 -2.1 1.9 6.85 -- -- 0.295 8.19 22.8 36333 6.92 3.52
627.25 1.17 4.96 -1.15 -- 5.49 -- -10.2 0.842 -- 25.28 26185 8.07 3.52
1293.05 1.69 6.24 -9.42 2.01 -- 0.675 -- -2.95 8.65 -- -- -- --
1294.55 1.68 6.24 -9.39 2.01 -- -- -- -2.95 8.65 -- -- -- --
624.91 1.16 5.52 -1.27 -- 7.55 -- -- 0.534 -- 22.65 36305 7.13 3.64
426.47 0.962 5.47 -- 2.01 8.2 -- -- 0.671 8.07 21.67 36349 7 3.2
1522.1 1.82 6.3 -9.39 -- -- -- -- -2.93 -- -- -- -- --
3620.45 2.81 6.01 -- 1.99 -- -- -- -1.9 9 -- -- -- --
618.04 1.16 5.47 -- -- 8.42 -- -- 0.719 -- 21.69 36327 6.95 3.28
3847.27 2.9 6.06 -- -- -- -- -- -1.89 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 385.05 radiation 1 43200 < th dose dependent rect. 4 11
2 385.08 radiation 1 43200 < th dose dependent rect. 2 13
5 385.14 radiation 1 43200 < th dose dependent rect. 21 18
23 388.11 radiation 1 43200 < th dose dependent sin 4 NA
37 389.13 temperature 20 43200 < th dose dependent rect. 2 1
58 390.65 radiation 1 43200 < th dose dependent rect. 6 23
63 391.03 radiation 1 43200 < th dose dependent rect. 6 1
68 391.13 radiation 1 43200 < th dose dependent rect. 6 20
79 391.30 radiation 1 43200 < th dose dependent rect. 6 15
133 394.25 radiation 1 43200 < th dose dependent rect. 4 5
192 396.23 temperature 20 43200 < th dose dependent sin 9 NA
210 396.95 radiation 1 43200 < th dose dependent rect. 4 22
214 396.96 radiation 1 43200 < th dose dependent rect. 21 23
215 396.97 radiation 1 43200 < th dose dependent no NA NA
222 396.97 radiation 1 43200 < th dose dependent rect. 1 23
238 397.00 radiation 1 43200 < th dose dependent rect. 4 16
265 397.07 radiation 1 43200 < th dose dependent rect. 12 23
283 397.26 radiation 1 43200 < th dose dependent rect. 10 23
398 399.97 temperature 20 43200 < th dose independent rect. 5 2
422 400.54 humidity 90 43200 > th dose dependent rect. 11 18
428 400.73 humidity 90 43200 > th dose dependent rect. 23 20
480 401.50 temperature 20 43200 > th dose independent rect. 5 2
638 404.04 temperature 20 43200 < th dose dependent no NA NA
653 404.29 radiation 1 43200 < th dose independent rect. 7 7
654 404.30 humidity 90 43200 > th dose dependent sin 14 NA
655 404.33 radiation 1 43200 > th dose independent rect. 7 7
682 404.95 temperature 20 43200 < th dose independent rect. 22 10
694 405.14 temperature 20 43200 < th dose independent rect. 1 7
702 405.26 humidity 90 43200 > th dose dependent rect. 23 1
730 405.72 humidity 90 43200 > th dose dependent rect. 22 10
735 405.80 temperature 20 43200 > th dose independent rect. 22 10
739 405.86 temperature 20 43200 > th dose independent rect. 1 7
755 406.11 temperature 20 43200 < th dose dependent rect. 5 23
766 406.25 humidity 90 43200 > th dose dependent no NA NA
773 406.36 humidity 90 43200 > th dose dependent rect. 17 23
791 406.57 temperature 20 43200 < th dose independent rect. 22 1
843 407.12 temperature 20 43200 < th dose independent rect. 22 6
855 407.30 temperature 20 43200 < th dose independent rect. 22 4
873 407.55 temperature 20 43200 > th dose independent rect. 22 6
904 407.87 temperature 20 43200 > th dose independent rect. 1 1
928 408.21 temperature 20 43200 < th dose independent rect. 1 1
964 408.51 humidity 90 43200 > th dose dependent rect. 2 23