Os04g0518400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Phenylalanine ammonia-lyase (Fragment).
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Os04g0518400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Phenylalanine ammonia-lyase (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 730.59 | 1.27 | 11.9 | -4.92 | 2.47 | -3.86 | 3.48 | -2.16 | -1.09 | 8.92 | 74 | 1300 | -- | -- |
| 740.12 | 1.27 | 12 | -5.23 | 2.45 | -3.94 | 3.35 | -- | -1.17 | 8.86 | 74.02 | 1303 | -- | -- |
| 770.74 | 1.29 | 12 | -4.84 | 2.4 | -3.81 | -- | -1.88 | -1.1 | 8.82 | 74.12 | 1317 | -- | -- |
| 778.02 | 1.3 | 12 | -5.11 | 2.42 | -3.9 | -- | -- | -1.17 | 8.87 | 74.12 | 1306 | -- | -- |
| 1059.34 | 1.52 | 12 | -4.8 | -- | -3.68 | -- | -1.94 | -1.05 | -- | 74.23 | 1420 | -- | -- |
| 1209.37 | 1.63 | 11.9 | -4.62 | 2.34 | -- | 3.26 | -- | -0.654 | 7.92 | -- | -- | -- | -- |
| 1240.63 | 1.65 | 11.9 | -4.53 | 2.34 | -- | -- | -- | -0.657 | 7.92 | -- | -- | -- | -- |
| 1068.97 | 1.52 | 12 | -5.08 | -- | -3.76 | -- | -- | -1.13 | -- | 74.02 | 1416 | -- | -- |
| 1476.25 | 1.79 | 12 | -- | 2.42 | -3.9 | -- | -- | -0.567 | 8.87 | 74.12 | 1306 | -- | -- |
| 1538.91 | 1.83 | 11.9 | -4.5 | -- | -- | -- | -- | -0.626 | -- | -- | -- | -- | -- |
| 1780.99 | 1.97 | 11.8 | -- | 2.31 | -- | -- | -- | -0.153 | 8.06 | -- | -- | -- | -- |
| 1657.62 | 1.9 | 11.9 | -- | -- | -5.26 | -- | -- | -0.336 | -- | 84 | 1437 | -- | -- |
| 2073.75 | 2.13 | 11.8 | -- | -- | -- | -- | -- | -0.127 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 761.88 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 2 | 762.09 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 15 |
| 8 | 764.56 | humidity | 60 | 1440 | > th | dose dependent | rect. | 6 | 17 |
| 14 | 765.49 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 15 |
| 26 | 767.10 | humidity | 80 | 1440 | < th | dose independent | sin | 1 | NA |
| 80 | 771.49 | humidity | 90 | 1440 | < th | dose dependent | rect. | 3 | 20 |
| 112 | 772.87 | humidity | 80 | 1440 | > th | dose independent | sin | 1 | NA |
| 119 | 773.13 | humidity | 90 | 1440 | < th | dose dependent | rect. | 16 | 22 |
| 134 | 773.76 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 9 |
| 147 | 774.30 | humidity | 60 | 1440 | > th | dose dependent | sin | 23 | NA |
| 230 | 777.49 | humidity | 50 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 240 | 777.77 | humidity | 50 | 1440 | > th | dose dependent | no | NA | NA |
| 259 | 778.21 | humidity | 90 | 1440 | < th | dose dependent | no | NA | NA |
| 286 | 779.59 | humidity | 50 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 295 | 779.87 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 310 | 780.41 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 427 | 785.00 | humidity | 70 | 1440 | > th | dose independent | rect. | 15 | 22 |
| 451 | 786.34 | humidity | 90 | 1440 | < th | dose dependent | sin | 0 | NA |
| 550 | 790.09 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 577 | 791.22 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 21 |
| 632 | 792.57 | humidity | 70 | 1440 | > th | dose independent | rect. | 7 | 20 |
| 665 | 792.65 | humidity | 70 | 1440 | > th | dose independent | no | NA | NA |
| 749 | 794.65 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 770 | 795.55 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 910 | 799.09 | humidity | 70 | 1440 | < th | dose independent | rect. | 14 | 22 |