BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0518400 Os04g0518400|AK067801
(714 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0518400 Similar to Phenylalanine ammonia-lyase (Fragment) 1405 0.0
Os02g0627100 Similar to Phenylalanine ammonia-lyase (EC 4.3... 1267 0.0
Os02g0626600 Phenylalanine ammonia-lyase family protein 1260 0.0
Os05g0427400 Similar to Phenylalanine ammonia-lyase (Fragment) 1254 0.0
Os04g0518200 Phenylalanine ammonia-lyase 1090 0.0
Os02g0626100 Similar to Phenylalanine ammonia-lyase 1081 0.0
Os11g0708900 Similar to Phenylalanine ammonia-lyase (EC 4.3... 1008 0.0
Os12g0520200 Phenylalanine/histidine ammonia-lyase family p... 880 0.0
Os12g0461300 209 8e-54
Os08g0308200 122 8e-28
Os08g0308300 102 1e-21
Os12g0461900 93 6e-19
>Os04g0518400 Similar to Phenylalanine ammonia-lyase (Fragment)
Length = 714
Score = 1405 bits (3636), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 684/714 (95%), Positives = 684/714 (95%)
Query: 1 MECENGHVAAAANGSSLCVAKPRADPLNWGKAAEELSGSHLDAVKRMVEEYRRPVVTIEG 60
MECENGHVAAAANGSSLCVAKPRADPLNWGKAAEELSGSHLDAVKRMVEEYRRPVVTIEG
Sbjct: 1 MECENGHVAAAANGSSLCVAKPRADPLNWGKAAEELSGSHLDAVKRMVEEYRRPVVTIEG 60
Query: 61 ASLTIXXXXXXXXXXXXXXELDESARGRVKASSDWVMNSMMNGTDSYGVTTGFGATSHRR 120
ASLTI ELDESARGRVKASSDWVMNSMMNGTDSYGVTTGFGATSHRR
Sbjct: 61 ASLTIAQVAAVASAGAARVELDESARGRVKASSDWVMNSMMNGTDSYGVTTGFGATSHRR 120
Query: 121 TKEGGALQRELIRFLNAGAFGNGDDGHVLPAAATRAAMLVRINTLLQGYSGIRFEILETI 180
TKEGGALQRELIRFLNAGAFGNGDDGHVLPAAATRAAMLVRINTLLQGYSGIRFEILETI
Sbjct: 121 TKEGGALQRELIRFLNAGAFGNGDDGHVLPAAATRAAMLVRINTLLQGYSGIRFEILETI 180
Query: 181 ATLLNANVTPCLPLRGTITASGDLVPLSYIAGLVTGRPNSVAVTPDGRKVDAAEAFKIAG 240
ATLLNANVTPCLPLRGTITASGDLVPLSYIAGLVTGRPNSVAVTPDGRKVDAAEAFKIAG
Sbjct: 181 ATLLNANVTPCLPLRGTITASGDLVPLSYIAGLVTGRPNSVAVTPDGRKVDAAEAFKIAG 240
Query: 241 IQHGFFELQPKEGLAMVNGTAVGSGLASMVLFEANVLGVLAEVLSAVFCEVMNGKPEYTD 300
IQHGFFELQPKEGLAMVNGTAVGSGLASMVLFEANVLGVLAEVLSAVFCEVMNGKPEYTD
Sbjct: 241 IQHGFFELQPKEGLAMVNGTAVGSGLASMVLFEANVLGVLAEVLSAVFCEVMNGKPEYTD 300
Query: 301 HLTHKLKHHPGQIEAAAIMEHILEGSSYMMLAKKLGELDPLMKPKQDRYALRTSPQWLGP 360
HLTHKLKHHPGQIEAAAIMEHILEGSSYMMLAKKLGELDPLMKPKQDRYALRTSPQWLGP
Sbjct: 301 HLTHKLKHHPGQIEAAAIMEHILEGSSYMMLAKKLGELDPLMKPKQDRYALRTSPQWLGP 360
Query: 361 QIEVIRAATKSIEREINSVNDNPLIDVSRGKALHGGNFQGTPIGVSMDNTRLAIAAIGKL 420
QIEVIRAATKSIEREINSVNDNPLIDVSRGKALHGGNFQGTPIGVSMDNTRLAIAAIGKL
Sbjct: 361 QIEVIRAATKSIEREINSVNDNPLIDVSRGKALHGGNFQGTPIGVSMDNTRLAIAAIGKL 420
Query: 421 MFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQS 480
MFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQS
Sbjct: 421 MFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQS 480
Query: 481 AEQHNQDVNSLGLISSRKTAEAIDVLKLMSSTFLIALCQAIDLRHLEENVRSAVKGCVTT 540
AEQHNQDVNSLGLISSRKTAEAIDVLKLMSSTFLIALCQAIDLRHLEENVRSAVKGCVTT
Sbjct: 481 AEQHNQDVNSLGLISSRKTAEAIDVLKLMSSTFLIALCQAIDLRHLEENVRSAVKGCVTT 540
Query: 541 VARKTLSTSATGDLHKARFCEKDLLQAIDREAVFAYADDPCSANYPLMQKMRAVLIEHAL 600
VARKTLSTSATGDLHKARFCEKDLLQAIDREAVFAYADDPCSANYPLMQKMRAVLIEHAL
Sbjct: 541 VARKTLSTSATGDLHKARFCEKDLLQAIDREAVFAYADDPCSANYPLMQKMRAVLIEHAL 600
Query: 601 ANGEAERNVDTSVFAKVATFEEELXXXXXXXXXXXXXXXXNGTAAKANRITECRSYPLYR 660
ANGEAERNVDTSVFAKVATFEEEL NGTAAKANRITECRSYPLYR
Sbjct: 601 ANGEAERNVDTSVFAKVATFEEELRVALPREVEAARAAVENGTAAKANRITECRSYPLYR 660
Query: 661 FVREELGTEYLTGEKTRSPGEEVNKVFVAMNQGKHIDALLECLKEWNGEPLPIC 714
FVREELGTEYLTGEKTRSPGEEVNKVFVAMNQGKHIDALLECLKEWNGEPLPIC
Sbjct: 661 FVREELGTEYLTGEKTRSPGEEVNKVFVAMNQGKHIDALLECLKEWNGEPLPIC 714
>Os02g0627100 Similar to Phenylalanine ammonia-lyase (EC 4.3.1.5)
Length = 713
Score = 1267 bits (3279), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 618/715 (86%), Positives = 643/715 (89%), Gaps = 3/715 (0%)
Query: 1 MECENGHVAAAANG-SSLCVAKPRADPLNWGKAAEELSGSHLDAVKRMVEEYRRPVVTIE 59
MECENG V+A NG S LCVA PRADPLNWGKA EE++GSHLD VKRMV EYR+P+V IE
Sbjct: 1 MECENGRVSA--NGMSGLCVAAPRADPLNWGKATEEMTGSHLDEVKRMVAEYRQPLVKIE 58
Query: 60 GASLTIXXXXXXXXXXXXXXELDESARGRVKASSDWVMNSMMNGTDSYGVTTGFGATSHR 119
GASL I ELDESAR RVKASSDWVMNSMMNGTDSYGVTTGFGATSHR
Sbjct: 59 GASLRIAQVAAVAAAGEARVELDESARERVKASSDWVMNSMMNGTDSYGVTTGFGATSHR 118
Query: 120 RTKEGGALQRELIRFLNAGAFGNGDDGHVLPAAATRAAMLVRINTLLQGYSGIRFEILET 179
RTKEGGALQRELIRFLNAGAFG G DGHVLPA ATRAAMLVRINTLLQGYSGIRFEILE
Sbjct: 119 RTKEGGALQRELIRFLNAGAFGTGTDGHVLPAEATRAAMLVRINTLLQGYSGIRFEILEA 178
Query: 180 IATLLNANVTPCLPLRGTITASGDLVPLSYIAGLVTGRPNSVAVTPDGRKVDAAEAFKIA 239
IA LLNANVTPCLPLRGTITASGDLVPLSYIAGLVTGR N+VAV PDG KV+AAEAFKIA
Sbjct: 179 IAKLLNANVTPCLPLRGTITASGDLVPLSYIAGLVTGRENAVAVAPDGSKVNAAEAFKIA 238
Query: 240 GIQHGFFELQPKEGLAMVNGTAVGSGLASMVLFEANVLGVLAEVLSAVFCEVMNGKPEYT 299
GIQ GFFELQPKEGLAMVNGTAVGSGLAS VLFEAN+L +LAEVLSAVFCEVMNGKPEYT
Sbjct: 239 GIQGGFFELQPKEGLAMVNGTAVGSGLASTVLFEANILAILAEVLSAVFCEVMNGKPEYT 298
Query: 300 DHLTHKLKHHPGQIEAAAIMEHILEGSSYMMLAKKLGELDPLMKPKQDRYALRTSPQWLG 359
DHLTHKLKHHPGQIEAAAIMEHILEGSSYM AKKLGELDPLMKPKQDRYALRTSPQWLG
Sbjct: 299 DHLTHKLKHHPGQIEAAAIMEHILEGSSYMKHAKKLGELDPLMKPKQDRYALRTSPQWLG 358
Query: 360 PQIEVIRAATKSIEREINSVNDNPLIDVSRGKALHGGNFQGTPIGVSMDNTRLAIAAIGK 419
PQIEVIRAATKSIEREINSVNDNPLIDVSRGKALHGGNFQGTPIGVSMDNTRLAIAAIGK
Sbjct: 359 PQIEVIRAATKSIEREINSVNDNPLIDVSRGKALHGGNFQGTPIGVSMDNTRLAIAAIGK 418
Query: 420 LMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQ 479
LMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFL NPVTNHVQ
Sbjct: 419 LMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLGNPVTNHVQ 478
Query: 480 SAEQHNQDVNSLGLISSRKTAEAIDVLKLMSSTFLIALCQAIDLRHLEENVRSAVKGCVT 539
SAEQHNQDVNSLGLISSRKT EAID+LKLMSSTFLIALCQA+DLRH+EENV+SAVK CV
Sbjct: 479 SAEQHNQDVNSLGLISSRKTDEAIDILKLMSSTFLIALCQAVDLRHIEENVKSAVKSCVM 538
Query: 540 TVARKTLSTSATGDLHKARFCEKDLLQAIDREAVFAYADDPCSANYPLMQKMRAVLIEHA 599
TVA+KTLST++TGDLH ARFCEKDLL+ IDREAVFAYADDPCS NYPLM+K+R VL+E A
Sbjct: 539 TVAKKTLSTNSTGDLHVARFCEKDLLKEIDREAVFAYADDPCSHNYPLMKKLRNVLVERA 598
Query: 600 LANGEAERNVDTSVFAKVATFEEELXXXXXXXXXXXXXXXXNGTAAKANRITECRSYPLY 659
LANG AE N DTSVFAKVA FEEEL NGTAA +RITECRSYPLY
Sbjct: 599 LANGAAEFNADTSVFAKVAQFEEELRATLPGAIEAARAAVENGTAAIPSRITECRSYPLY 658
Query: 660 RFVREELGTEYLTGEKTRSPGEEVNKVFVAMNQGKHIDALLECLKEWNGEPLPIC 714
RFVREELGT+YLTGEKTRSPGEE+NKV VA+N+GKHID LLECLKEWNGEPLPIC
Sbjct: 659 RFVREELGTKYLTGEKTRSPGEELNKVLVAINEGKHIDPLLECLKEWNGEPLPIC 713
>Os02g0626600 Phenylalanine ammonia-lyase family protein
Length = 713
Score = 1260 bits (3261), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 618/715 (86%), Positives = 638/715 (89%), Gaps = 3/715 (0%)
Query: 1 MECENGHVAA-AANGSSLCVAKPRADPLNWGKAAEELSGSHLDAVKRMVEEYRRPVVTIE 59
M CENG VAA NG LC+A PRADPLNWGKAAEE+SGSHLD VKRMV EYR+P+V IE
Sbjct: 1 MACENGQVAADGING--LCMAAPRADPLNWGKAAEEMSGSHLDEVKRMVAEYRQPLVKIE 58
Query: 60 GASLTIXXXXXXXXXXXXXXELDESARGRVKASSDWVMNSMMNGTDSYGVTTGFGATSHR 119
GASL I ELDESAR RVKASSDWVMNSMMNGTDSYGVTTGFGATSHR
Sbjct: 59 GASLRIAQVAAVAAAGEARVELDESARERVKASSDWVMNSMMNGTDSYGVTTGFGATSHR 118
Query: 120 RTKEGGALQRELIRFLNAGAFGNGDDGHVLPAAATRAAMLVRINTLLQGYSGIRFEILET 179
RTKEGGALQRELIRFLNAGAFG G DGHVL A ATRAAMLVRINTLLQGYSGIRFEILE
Sbjct: 119 RTKEGGALQRELIRFLNAGAFGTGTDGHVLSAEATRAAMLVRINTLLQGYSGIRFEILEA 178
Query: 180 IATLLNANVTPCLPLRGTITASGDLVPLSYIAGLVTGRPNSVAVTPDGRKVDAAEAFKIA 239
I LLNANVTPCLPLRGT+TASGDLVPLSYIAGLVTGR NSVAV PDG KV+AAEAFKIA
Sbjct: 179 ITKLLNANVTPCLPLRGTVTASGDLVPLSYIAGLVTGRENSVAVAPDGSKVNAAEAFKIA 238
Query: 240 GIQHGFFELQPKEGLAMVNGTAVGSGLASMVLFEANVLGVLAEVLSAVFCEVMNGKPEYT 299
GIQ GFFELQPKEGLAMVNGTAVGSGLAS VLFEAN+L VLAEVLSAVFCEVMNGKPEYT
Sbjct: 239 GIQGGFFELQPKEGLAMVNGTAVGSGLASTVLFEANILAVLAEVLSAVFCEVMNGKPEYT 298
Query: 300 DHLTHKLKHHPGQIEAAAIMEHILEGSSYMMLAKKLGELDPLMKPKQDRYALRTSPQWLG 359
DHLTHKLKHHPGQIEAAAIMEHILEGSSYM LAKKLGELDPLMKPKQDRYALRTSPQWLG
Sbjct: 299 DHLTHKLKHHPGQIEAAAIMEHILEGSSYMKLAKKLGELDPLMKPKQDRYALRTSPQWLG 358
Query: 360 PQIEVIRAATKSIEREINSVNDNPLIDVSRGKALHGGNFQGTPIGVSMDNTRLAIAAIGK 419
PQIEVIRAATKSIEREINSVNDNPLIDVSR KALHGGNFQGTPIGVSMDNTRLAIAAIGK
Sbjct: 359 PQIEVIRAATKSIEREINSVNDNPLIDVSRDKALHGGNFQGTPIGVSMDNTRLAIAAIGK 418
Query: 420 LMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQ 479
LMFAQFSELVND+YNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFL NPVTNHVQ
Sbjct: 419 LMFAQFSELVNDYYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLGNPVTNHVQ 478
Query: 480 SAEQHNQDVNSLGLISSRKTAEAIDVLKLMSSTFLIALCQAIDLRHLEENVRSAVKGCVT 539
SAEQHNQDVNSLGLISSRKTAEA+++LKLMSSTFL+ALCQAIDLR +EENV+SAVK CV
Sbjct: 479 SAEQHNQDVNSLGLISSRKTAEAVEILKLMSSTFLVALCQAIDLRQIEENVKSAVKSCVM 538
Query: 540 TVARKTLSTSATGDLHKARFCEKDLLQAIDREAVFAYADDPCSANYPLMQKMRAVLIEHA 599
TVARKTLSTSATG LH ARFCEKDLLQ IDREAVFAYADDPCSANYPLM+K+R VL+E A
Sbjct: 539 TVARKTLSTSATGGLHAARFCEKDLLQEIDREAVFAYADDPCSANYPLMKKLRNVLVERA 598
Query: 600 LANGEAERNVDTSVFAKVATFEEELXXXXXXXXXXXXXXXXNGTAAKANRITECRSYPLY 659
LANG AE N +TSVFAKVA FEEEL NGTAA NRITECRSYPLY
Sbjct: 599 LANGAAEFNAETSVFAKVAQFEEELRAALPAAVLAARAAVENGTAATPNRITECRSYPLY 658
Query: 660 RFVREELGTEYLTGEKTRSPGEEVNKVFVAMNQGKHIDALLECLKEWNGEPLPIC 714
RFVREELGT YLTGEKTRSPGEE+NKV VA+NQGKHID LLECLKEWNG PLPIC
Sbjct: 659 RFVREELGTAYLTGEKTRSPGEELNKVLVAINQGKHIDPLLECLKEWNGAPLPIC 713
>Os05g0427400 Similar to Phenylalanine ammonia-lyase (Fragment)
Length = 716
Score = 1254 bits (3244), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 614/717 (85%), Positives = 640/717 (89%), Gaps = 4/717 (0%)
Query: 1 MECENGHVAAAANGSSLCVAKPRADPLNWGKAAEELSGSHLDAVKRMVEEYRRPVVTIEG 60
MECE G+VAAAA+G LC+ PRADPLNWGKAAEE++GSHLD VKRMV EYR+PVV IEG
Sbjct: 1 MECETGYVAAAADGG-LCMEVPRADPLNWGKAAEEMAGSHLDEVKRMVAEYRQPVVRIEG 59
Query: 61 ASLTIXXXXXXXXXX---XXXXELDESARGRVKASSDWVMNSMMNGTDSYGVTTGFGATS 117
ASL I ELDESAR RVKASSDWVMNSM NGTDSYGVTTGFGATS
Sbjct: 60 ASLRIAQVAAVAGAGDGEAAMVELDESARERVKASSDWVMNSMANGTDSYGVTTGFGATS 119
Query: 118 HRRTKEGGALQRELIRFLNAGAFGNGDDGHVLPAAATRAAMLVRINTLLQGYSGIRFEIL 177
HRRTKEGGALQRELIRFLNAGAFG G DGHVLPA ATRAAMLVRINTLLQGYSGIRFEIL
Sbjct: 120 HRRTKEGGALQRELIRFLNAGAFGTGADGHVLPAGATRAAMLVRINTLLQGYSGIRFEIL 179
Query: 178 ETIATLLNANVTPCLPLRGTITASGDLVPLSYIAGLVTGRPNSVAVTPDGRKVDAAEAFK 237
E +A LLNANVTPCLPLRGTITASGDLVPLSYIAGLVTGR NSVAV PDGRKV+AAEAFK
Sbjct: 180 EAVAKLLNANVTPCLPLRGTITASGDLVPLSYIAGLVTGRENSVAVAPDGRKVNAAEAFK 239
Query: 238 IAGIQHGFFELQPKEGLAMVNGTAVGSGLASMVLFEANVLGVLAEVLSAVFCEVMNGKPE 297
IAGIQ GFFELQPKEGLAMVNGTAVGSGLAS VLFEANVL +LAEVLSAVFCEVMNGKPE
Sbjct: 240 IAGIQGGFFELQPKEGLAMVNGTAVGSGLASTVLFEANVLAILAEVLSAVFCEVMNGKPE 299
Query: 298 YTDHLTHKLKHHPGQIEAAAIMEHILEGSSYMMLAKKLGELDPLMKPKQDRYALRTSPQW 357
YTDHLTHKLKHHPGQIEAAAIMEHILEGSSYM AK+LGELDPLMKPKQDRYALRTSPQW
Sbjct: 300 YTDHLTHKLKHHPGQIEAAAIMEHILEGSSYMKEAKRLGELDPLMKPKQDRYALRTSPQW 359
Query: 358 LGPQIEVIRAATKSIEREINSVNDNPLIDVSRGKALHGGNFQGTPIGVSMDNTRLAIAAI 417
LGPQIEVIRAATKSIEREINSVNDNPLIDVSRGKALHGGNFQGTPIGVSMDNTRLAIAAI
Sbjct: 360 LGPQIEVIRAATKSIEREINSVNDNPLIDVSRGKALHGGNFQGTPIGVSMDNTRLAIAAI 419
Query: 418 GKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNH 477
GKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFL NPVTNH
Sbjct: 420 GKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLGNPVTNH 479
Query: 478 VQSAEQHNQDVNSLGLISSRKTAEAIDVLKLMSSTFLIALCQAIDLRHLEENVRSAVKGC 537
VQSAEQHNQDVNSLGLISSRKTAEAID+LKLMSSTFL+ALCQAIDLRH+EENV+ AVK C
Sbjct: 480 VQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHIEENVKGAVKTC 539
Query: 538 VTTVARKTLSTSATGDLHKARFCEKDLLQAIDREAVFAYADDPCSANYPLMQKMRAVLIE 597
V TVA+KTLST++TG LH ARFCEKDLL IDREAVFAYADDPCSANYPLM+K+R+VL+E
Sbjct: 540 VMTVAKKTLSTNSTGGLHVARFCEKDLLSEIDREAVFAYADDPCSANYPLMKKLRSVLVE 599
Query: 598 HALANGEAERNVDTSVFAKVATFEEELXXXXXXXXXXXXXXXXNGTAAKANRITECRSYP 657
ALANG AE + +TSV AKVA FEEEL +GTAA NRI ECRSYP
Sbjct: 600 RALANGAAEFDAETSVLAKVARFEEELRAALPRAVEAARAAVESGTAAAPNRIAECRSYP 659
Query: 658 LYRFVREELGTEYLTGEKTRSPGEEVNKVFVAMNQGKHIDALLECLKEWNGEPLPIC 714
LYRFVREELGT YLTGEKTRSPGEE+NKV VA+NQGKHID LLECLKEWNG PLPIC
Sbjct: 660 LYRFVREELGTAYLTGEKTRSPGEELNKVLVAINQGKHIDPLLECLKEWNGAPLPIC 716
>Os04g0518200 Phenylalanine ammonia-lyase
Length = 707
Score = 1090 bits (2820), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 522/694 (75%), Positives = 588/694 (84%), Gaps = 3/694 (0%)
Query: 24 ADPLNWGKAAEELSGSHLDAVKRMVEEYRRPVVTIEGASL---TIXXXXXXXXXXXXXXE 80
+DPL+WGKAA E++GSHLD VKRMV + R VV IEG+SL + E
Sbjct: 14 SDPLSWGKAALEMTGSHLDEVKRMVAQSREAVVKIEGSSLRVGQVAAVSAAKDASGVVVE 73
Query: 81 LDESARGRVKASSDWVMNSMMNGTDSYGVTTGFGATSHRRTKEGGALQRELIRFLNAGAF 140
LDE AR RVKASS+W++N + +G D YGVTTGFG TSHRRTK+G ALQ EL+R LNAG F
Sbjct: 74 LDEEARPRVKASSEWILNCIAHGGDIYGVTTGFGGTSHRRTKDGQALQVELLRHLNAGIF 133
Query: 141 GNGDDGHVLPAAATRAAMLVRINTLLQGYSGIRFEILETIATLLNANVTPCLPLRGTITA 200
GNG DG+ LP+ +RAAMLVRINTLLQGYSGIRFEILE I L+N V+PCLPLRGTITA
Sbjct: 134 GNGSDGNSLPSEVSRAAMLVRINTLLQGYSGIRFEILEAITKLINTGVSPCLPLRGTITA 193
Query: 201 SGDLVPLSYIAGLVTGRPNSVAVTPDGRKVDAAEAFKIAGIQHGFFELQPKEGLAMVNGT 260
SGDLVPLSYIAGL+TGRPN+ AVT DG+KVDAAEAFKIAGIQ GFF L+PKEGLA+VNGT
Sbjct: 194 SGDLVPLSYIAGLITGRPNAQAVTVDGKKVDAAEAFKIAGIQGGFFRLEPKEGLAIVNGT 253
Query: 261 AVGSGLASMVLFEANVLGVLAEVLSAVFCEVMNGKPEYTDHLTHKLKHHPGQIEAAAIME 320
+VGS LA+MVL++ANVL VL+EVLSAVFCEVMNGKPEYTDHLTHKLKHHPG IEAAAIME
Sbjct: 254 SVGSALAAMVLYDANVLAVLSEVLSAVFCEVMNGKPEYTDHLTHKLKHHPGSIEAAAIME 313
Query: 321 HILEGSSYMMLAKKLGELDPLMKPKQDRYALRTSPQWLGPQIEVIRAATKSIEREINSVN 380
HIL GS++M A+K+ E+DPL+KPKQDRYALRTSPQWLGPQIEVIRAATKSIERE+NSVN
Sbjct: 314 HILAGSAFMPHAQKVNEVDPLLKPKQDRYALRTSPQWLGPQIEVIRAATKSIEREVNSVN 373
Query: 381 DNPLIDVSRGKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSN 440
DNP+IDV RGKALHGGNFQGTPIGVSMDNTRLAIA IGKLMFAQFSELVN+FYNNGL SN
Sbjct: 374 DNPVIDVHRGKALHGGNFQGTPIGVSMDNTRLAIANIGKLMFAQFSELVNEFYNNGLTSN 433
Query: 441 LSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTA 500
L+G RNPSLDYGFKG EIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGL+S+RKTA
Sbjct: 434 LAGSRNPSLDYGFKGTEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLVSARKTA 493
Query: 501 EAIDVLKLMSSTFLIALCQAIDLRHLEENVRSAVKGCVTTVARKTLSTSATGDLHKARFC 560
EA+D+LKLMSST+L+ALCQA+DLRHLEEN++SAVK CVTTVA+K L+T G LH ARF
Sbjct: 494 EAVDILKLMSSTYLVALCQAVDLRHLEENLKSAVKNCVTTVAKKVLTTGPAGGLHSARFS 553
Query: 561 EKDLLQAIDREAVFAYADDPCSANYPLMQKMRAVLIEHALANGEAERNVDTSVFAKVATF 620
EK LL AIDREAV++YADDPCSANYPLM K+RAVL+EHALANG AE++ +SVF+K+ F
Sbjct: 554 EKALLTAIDREAVYSYADDPCSANYPLMTKIRAVLVEHALANGPAEKDDGSSVFSKITAF 613
Query: 621 EEELXXXXXXXXXXXXXXXXNGTAAKANRITECRSYPLYRFVREELGTEYLTGEKTRSPG 680
EEEL GTA NRI E RS+PLYRFVREELG YLTGEK +SPG
Sbjct: 614 EEELREALPREMEAARVAFETGTAPITNRIKESRSFPLYRFVREELGCVYLTGEKLKSPG 673
Query: 681 EEVNKVFVAMNQGKHIDALLECLKEWNGEPLPIC 714
EE NKVF+A+++ K ID +LECLKEWNGEPLPIC
Sbjct: 674 EECNKVFLAISERKLIDPMLECLKEWNGEPLPIC 707
>Os02g0626100 Similar to Phenylalanine ammonia-lyase
Length = 701
Score = 1081 bits (2795), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/694 (73%), Positives = 585/694 (84%), Gaps = 5/694 (0%)
Query: 23 RADPLNWGKAAEELSGSHLDAVKRMVEEYRRPVVTIEGASL---TIXXXXXXXXXXXXXX 79
+ DPLNWG AA E++GSHLD VKRMV ++R P+V I+GA+L +
Sbjct: 9 KEDPLNWGAAAAEMAGSHLDEVKRMVAQFREPLVKIQGATLRVGQVAAVAQAKDAAGVAV 68
Query: 80 ELDESARGRVKASSDWVMNSMMNGTDSYGVTTGFGATSHRRTKEGGALQRELIRFLNAGA 139
ELDE AR RVKASS+W++N + +G D YGVTTGFG TSHRRTK+G ALQ EL+R LNAG
Sbjct: 69 ELDEEARPRVKASSEWILNCIAHGGDIYGVTTGFGGTSHRRTKDGPALQVELLRHLNAGI 128
Query: 140 FGNGDDGHVLPAAATRAAMLVRINTLLQGYSGIRFEILETIATLLNANVTPCLPLRGTIT 199
FG G DGH LP+ RAAMLVRINTLLQGYSGIRFEILE I LLN VTPCLPLRGTIT
Sbjct: 129 FGTGSDGHTLPSETVRAAMLVRINTLLQGYSGIRFEILEAITKLLNTGVTPCLPLRGTIT 188
Query: 200 ASGDLVPLSYIAGLVTGRPNSVAVTPDGRKVDAAEAFKIAGIQHGFFELQPKEGLAMVNG 259
ASGDLVPLSYIAGL+TGRPN+ A++PDGRKVDAAEAFK+AGI+ GFF L PKEGLA+VNG
Sbjct: 189 ASGDLVPLSYIAGLITGRPNAQAISPDGRKVDAAEAFKLAGIEGGFFTLNPKEGLAIVNG 248
Query: 260 TAVGSGLASMVLFEANVLGVLAEVLSAVFCEVMNGKPEYTDHLTHKLKHHPGQIEAAAIM 319
T+VGS LA+ V+F+AN+L VL+EVLSAVFCEVMNGKPEYTDHLTHKLKHHPG IEAAAIM
Sbjct: 249 TSVGSALAATVMFDANILAVLSEVLSAVFCEVMNGKPEYTDHLTHKLKHHPGSIEAAAIM 308
Query: 320 EHILEGSSYMMLAKKLGELDPLMKPKQDRYALRTSPQWLGPQIEVIRAATKSIEREINSV 379
EHIL GSS+M AKK+ E+DPL+KPKQDRYALRTSPQWLGPQIEVIRAATKSIERE+NSV
Sbjct: 309 EHILAGSSFMSHAKKVNEMDPLLKPKQDRYALRTSPQWLGPQIEVIRAATKSIEREVNSV 368
Query: 380 NDNPLIDVSRGKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPS 439
NDNP+IDV RGKALHGGNFQGTPIGVSMDN RLAIA IGKLMFAQFSELVN+FYNNGL S
Sbjct: 369 NDNPVIDVHRGKALHGGNFQGTPIGVSMDNARLAIANIGKLMFAQFSELVNEFYNNGLTS 428
Query: 440 NLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKT 499
NL+G RNPSLDYGFKG EIAMASYCSELQ+LANP+TNHVQSAEQHNQDVNSLGL+S+RKT
Sbjct: 429 NLAGSRNPSLDYGFKGTEIAMASYCSELQYLANPITNHVQSAEQHNQDVNSLGLVSARKT 488
Query: 500 AEAIDVLKLMSSTFLIALCQAIDLRHLEENVRSAVKGCVTTVARKTLSTSATGDLHKARF 559
EA+D+LKLM+ST+++ALCQA+DLRHLEEN++S+VK CVT VA+K L+ + TGDL ARF
Sbjct: 489 LEAVDILKLMTSTYIVALCQAVDLRHLEENIKSSVKNCVTQVAKKVLTMNPTGDLSSARF 548
Query: 560 CEKDLLQAIDREAVFAYADDPCSANYPLMQKMRAVLIEHALANGEAERNVDTSVFAKVAT 619
EK+LL AIDREAVF+YADDPCSANYPLMQK+RAVL+EHAL +G+AE + SVF+K+
Sbjct: 549 SEKNLLTAIDREAVFSYADDPCSANYPLMQKLRAVLVEHALTSGDAEP--EASVFSKITK 606
Query: 620 FEEELXXXXXXXXXXXXXXXXNGTAAKANRITECRSYPLYRFVREELGTEYLTGEKTRSP 679
FEEEL NGTA ANRI E RS+PLYRFVREELG +LTGEK +SP
Sbjct: 607 FEEELRSALPREIEAARVAVANGTAPVANRIVESRSFPLYRFVREELGCVFLTGEKLKSP 666
Query: 680 GEEVNKVFVAMNQGKHIDALLECLKEWNGEPLPI 713
GEE NKVF+ ++QGK ID +L+CLKEWNGEPLPI
Sbjct: 667 GEECNKVFLGISQGKLIDPMLDCLKEWNGEPLPI 700
>Os11g0708900 Similar to Phenylalanine ammonia-lyase (EC 4.3.1.5) (Fragment)
Length = 700
Score = 1008 bits (2605), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 511/721 (70%), Positives = 575/721 (79%), Gaps = 30/721 (4%)
Query: 1 MECENGHVAAAANGSSLCVAKPR-ADPLNWGKAAEELSGSHLDAVKRMVEEYRRPVVTIE 59
MECE G NGS PR +DPL WGKAAE ++GSHL+ VKRMV EYR P+V I+
Sbjct: 1 MECETG-----VNGSG-----PRGSDPLYWGKAAEGVAGSHLEEVKRMVVEYRAPLVKID 50
Query: 60 GASLTIXXXXXXX-XXXXXXXELDESARGRVKASSDWVMNSMMNGTDSYGVTTGFGATSH 118
GA L++ LDESAR R++AS +WV S MNGTD+YGVTTGFG +H
Sbjct: 51 GAMLSVAKVAAVAGEAARVQVVLDESARPRLEASREWVFESTMNGTDTYGVTTGFGGAAH 110
Query: 119 RRTKEGGALQRELIRFLNAGAFG-NGDDGHVLPAAATRAAMLVRINTLLQGYSGIRFEIL 177
RRTKE ALQ+ELIR+LNAG FG + DG+ LP TRAAMLVRINTL QGYSGIRFEIL
Sbjct: 111 RRTKEFAALQKELIRYLNAGVFGASRSDGYTLPTEVTRAAMLVRINTLTQGYSGIRFEIL 170
Query: 178 ETIATLLNANVTPCLPLRGTITASGDLVPLSYIAGLVTGRPNSVAVTPDGRKVDAAEAFK 237
E IA LLNANVTPCLPLRGTITASGDLVPLSYIAGL+TGR NS AV PDG KVDAAEAF+
Sbjct: 171 EAIAKLLNANVTPCLPLRGTITASGDLVPLSYIAGLITGRHNSAAVAPDGTKVDAAEAFR 230
Query: 238 IAGIQHGFFELQPKEGLAMVNGTAVGSGLASMVLFEANVLGVLAEVLSAVFCEVMNGKPE 297
+AGI+HGFF LQPKEGLA+VNGTAVGSGLA++VLFEANVL VLAEVLSAV+CEVM G PE
Sbjct: 231 MAGIEHGFFALQPKEGLAIVNGTAVGSGLAAIVLFEANVLAVLAEVLSAVYCEVMAGNPE 290
Query: 298 YTDHLTHKLKHHPGQIEAAAIMEHILEGSSYMM-LAKK----LGELDPLMKPKQDRYALR 352
YTDHL H LKHHPGQIEAAAIMEHILEGSSYM LAK GELD L K KQDRYA+R
Sbjct: 291 YTDHLIHALKHHPGQIEAAAIMEHILEGSSYMKKLAKDKEQGQGELDRLTKLKQDRYAIR 350
Query: 353 TSPQWLGPQIEVIRAATKSIEREINSVNDNPLIDVSRGKALHGGNFQGTPIGVSMDNTRL 412
T+PQWLGPQ+EVIR ATKSIEREINSVNDNP+IDV+R KALHGGNFQGTP+GVSMDNTRL
Sbjct: 351 TAPQWLGPQVEVIRFATKSIEREINSVNDNPVIDVARRKALHGGNFQGTPVGVSMDNTRL 410
Query: 413 AIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLAN 472
AIAAIG+LMF+QFSELV+ FY+NGLPSNLSGGRNPSLDYGF GAE+AMASYCSELQFLAN
Sbjct: 411 AIAAIGRLMFSQFSELVSSFYSNGLPSNLSGGRNPSLDYGFNGAEVAMASYCSELQFLAN 470
Query: 473 PVTNHVQSAEQHNQDVNSLGLISSRKTAEAIDVLKLMSSTFLIALCQAIDLRHLEENVRS 532
PVTNHVQ+AEQHNQ VNSLGLISSR TAEA+ +LKLMSSTFLIALCQA+DLR LEE++++
Sbjct: 471 PVTNHVQTAEQHNQSVNSLGLISSRMTAEAVTILKLMSSTFLIALCQAVDLRQLEESIKA 530
Query: 533 AVKGCVTTVARKTLSTSATGDLHKARFCEKDLLQAIDREAVFAYADDPCSANYPLMQKMR 592
AV CVT VA+K+L+ + + L AIDR AVF YA+DPC ++ PLMQK+R
Sbjct: 531 AVNKCVTNVAKKSLTLA----MDDDDHLLALLGAAIDRVAVFTYAEDPCRSSLPLMQKLR 586
Query: 593 AVLIEHALANGEAERNVDTSVFAKVATFEEELXXXXXXXXXXXXXXXXNGTAAKANRITE 652
AVL+EHALAN N D + AKVA FE++L +GTA NRI++
Sbjct: 587 AVLMEHALAN-----NGDI-LLAKVAEFEQQLRAVLPDEVEAARAAVESGTA--PNRISD 638
Query: 653 CRSYPLYRFVREELGTEYLTGEKTRSPGEEVNKVFVAMNQGKHIDALLECLKEWNGEPLP 712
CRSYPLYRFVR+ELG EYLTGEKTRSPGEEV+KV +AMNQ KHI LLECL EW G PLP
Sbjct: 639 CRSYPLYRFVRKELGAEYLTGEKTRSPGEEVDKVVIAMNQHKHIHPLLECLSEWKGAPLP 698
Query: 713 I 713
+
Sbjct: 699 L 699
>Os12g0520200 Phenylalanine/histidine ammonia-lyase family protein
Length = 567
Score = 880 bits (2274), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/582 (74%), Positives = 486/582 (83%), Gaps = 17/582 (2%)
Query: 133 RFLNAGAFG-NGDDGHVLPAAATRAAMLVRINTLLQGYSGIRFEILETIATLLNANVTPC 191
R+LNAG FG + DG+ LP TRAAMLVRINTL QGYSGIRFEILE IA LLNANVTPC
Sbjct: 1 RYLNAGVFGASRSDGYTLPTEVTRAAMLVRINTLTQGYSGIRFEILEAIAKLLNANVTPC 60
Query: 192 LPLRGTITASGDLVPLSYIAGLVTGRPNSVAVTPDGRKVDAAEAFKIAGIQHGFFELQPK 251
LPLRGTITASGDLVPLSYIAGL+TGR NS AV PDG KVDAAEAF+IAGI+HGFF LQPK
Sbjct: 61 LPLRGTITASGDLVPLSYIAGLITGRQNSAAVAPDGSKVDAAEAFRIAGIEHGFFALQPK 120
Query: 252 EGLAMVNGTAVGSGLASMVLFEANVLGVLAEVLSAVFCEVMNGKPEYTDHLTHKLKHHPG 311
EGLA+VNGTAVGSGLA++VLFEANVL VLAEVLSAV+CEVM G PEYTDHL H LKHHPG
Sbjct: 121 EGLAIVNGTAVGSGLAAIVLFEANVLAVLAEVLSAVYCEVMAGNPEYTDHLIHALKHHPG 180
Query: 312 QIEAAAIMEHILEGSSYMMLAKKLGELDPLMKPKQDRYALRTSPQWLGPQIEVIRAATKS 371
QIEAAAIMEHILEGSSYM LAK+ GELD L K +QDRYA+RT+PQWLGPQ+EVIR ATKS
Sbjct: 181 QIEAAAIMEHILEGSSYMRLAKEQGELDRLTKLRQDRYAIRTAPQWLGPQVEVIRFATKS 240
Query: 372 IEREINSVNDNPLIDVSRGKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVND 431
IEREINSVNDNP+IDV+R KALHGGNFQGTPIGVSMDNTRLAIAAIG+LMF+QFSEL +
Sbjct: 241 IEREINSVNDNPVIDVARRKALHGGNFQGTPIGVSMDNTRLAIAAIGRLMFSQFSELASS 300
Query: 432 FYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSL 491
FY+NGLPSNLSGGRNPSLDYGF GAE+AMASYCSELQFLANPVTNHVQ+AEQHNQ VNSL
Sbjct: 301 FYSNGLPSNLSGGRNPSLDYGFNGAEVAMASYCSELQFLANPVTNHVQTAEQHNQSVNSL 360
Query: 492 GLISSRKTAEAIDVLKLMSSTFLIALCQAIDLRHLEENVRSAVKGCVTTVARKTLSTSAT 551
GLISSR TAEA+ +LKLMSSTFLIALCQA+DLR LEE++++AV CVT VA+K+L+
Sbjct: 361 GLISSRMTAEAVTILKLMSSTFLIALCQAVDLRQLEESIKAAVNKCVTNVAKKSLAMDDD 420
Query: 552 GDLHKARFCEKDLLQAIDREAVFAYADDPCSANYPLMQKMRAVLIEHALANGEAERNVDT 611
L AIDR AVF YA+DPC ++ PL+QK+RAVL++HALANG+ +
Sbjct: 421 DLLALLG-------AAIDRVAVFTYAEDPCRSSLPLIQKLRAVLMDHALANGDNQ----- 468
Query: 612 SVFAKVATFEEELXXXXXXXXXXXXXXXXNGTAAKANRITECRSYPLYRFVREELGTEYL 671
AKVA FE++L +GTA NRIT+CRSYPLYRFVR+ELG EYL
Sbjct: 469 --LAKVAEFEQQLRAVLHDEVEAARAAVESGTA--PNRITQCRSYPLYRFVRKELGAEYL 524
Query: 672 TGEKTRSPGEEVNKVFVAMNQGKHIDALLECLKEWNGEPLPI 713
TGEKTRSPGEEV+KV +AMNQ KHI+ LLECL EW G PLP+
Sbjct: 525 TGEKTRSPGEEVDKVVIAMNQHKHINPLLECLSEWKGAPLPL 566
>Os12g0461300
Length = 128
Score = 209 bits (531), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 104/128 (81%), Positives = 107/128 (83%), Gaps = 1/128 (0%)
Query: 588 MQKMRAVLIEHALANGEAERNVDTSVFAKVATFEEELXXXXXXXXXXX-XXXXXNGTAAK 646
MQKMR++LIEH LANGEAERNVDTSVFAKVATFEEEL NGTAAK
Sbjct: 1 MQKMRSILIEHGLANGEAERNVDTSVFAKVATFEEELRVALPREERRLPRAAVENGTAAK 60
Query: 647 ANRITECRSYPLYRFVREELGTEYLTGEKTRSPGEEVNKVFVAMNQGKHIDALLECLKEW 706
ANRITECRSYPLYR VR+ELGTEYLTGEKTRSPGEEVNKV VAMN GKHIDALLECLKEW
Sbjct: 61 ANRITECRSYPLYRSVRKELGTEYLTGEKTRSPGEEVNKVSVAMNLGKHIDALLECLKEW 120
Query: 707 NGEPLPIC 714
NGEPLPIC
Sbjct: 121 NGEPLPIC 128
>Os08g0308200
Length = 153
Score = 122 bits (307), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 62/89 (69%), Positives = 67/89 (75%)
Query: 587 LMQKMRAVLIEHALANGEAERNVDTSVFAKVATFEEELXXXXXXXXXXXXXXXXNGTAAK 646
LMQKMR VLIEHALAN EAERNV+TSVFAKVA FEE+L NGTAAK
Sbjct: 59 LMQKMRTVLIEHALANSEAERNVNTSVFAKVAMFEEKLRAALPREVEATRAAVENGTAAK 118
Query: 647 ANRITECRSYPLYRFVREELGTEYLTGEK 675
ANRITEC+SY LYRFV +EL TEYLTG+K
Sbjct: 119 ANRITECKSYSLYRFVCKELRTEYLTGKK 147
>Os08g0308300
Length = 111
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/88 (63%), Positives = 59/88 (67%), Gaps = 13/88 (14%)
Query: 588 MQKMRAVLIEHALANGEAERNVDTSVFAKVATFEEELXXXXXXXXXXXXXXXXNGTAAKA 647
MQKMR VLIEHALAN EAERNV+ SVFAKVA FEEEL +A
Sbjct: 1 MQKMRTVLIEHALANSEAERNVNISVFAKVAMFEEELRAALPRE-------------VEA 47
Query: 648 NRITECRSYPLYRFVREELGTEYLTGEK 675
ITECRSY LYRFVR+ELG EYLTGEK
Sbjct: 48 TPITECRSYSLYRFVRKELGIEYLTGEK 75
>Os12g0461900
Length = 97
Score = 93.2 bits (230), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 42/45 (93%), Positives = 44/45 (97%)
Query: 579 DPCSANYPLMQKMRAVLIEHALANGEAERNVDTSVFAKVATFEEE 623
DPCSA+YPLMQKMRAVLIEHALANGEAERNVD+SVFAKV TFEEE
Sbjct: 49 DPCSASYPLMQKMRAVLIEHALANGEAERNVDSSVFAKVTTFEEE 93
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.132 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 22,501,328
Number of extensions: 894967
Number of successful extensions: 1989
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 1966
Number of HSP's successfully gapped: 12
Length of query: 714
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 606
Effective length of database: 11,396,689
Effective search space: 6906393534
Effective search space used: 6906393534
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 160 (66.2 bits)