Os05g0427400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Phenylalanine ammonia-lyase (Fragment).
FiT-DB / Search/ Help/ Sample detail
|
Os05g0427400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Phenylalanine ammonia-lyase (Fragment).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 496.72 | 1.05 | 9.86 | 0.409 | 2.41 | -2.38 | 1.67 | 0.505 | 0.659 | 8.52 | 20.57 | 248 | -- | -- |
| 496.94 | 1.04 | 9.87 | 0.322 | 2.41 | -2.35 | 1.7 | -- | 0.641 | 8.52 | 20.6 | 246 | -- | -- |
| 505.51 | 1.05 | 9.86 | 0.427 | 2.41 | -2.39 | -- | 0.3 | 0.659 | 8.47 | 20.52 | 252 | -- | -- |
| 505.47 | 1.05 | 9.87 | 0.362 | 2.39 | -2.34 | -- | -- | 0.632 | 8.43 | 20.6 | 261 | -- | -- |
| 699.54 | 1.23 | 9.92 | 0.706 | -- | -3.72 | -- | 0.985 | 0.687 | -- | 24.15 | 520 | -- | -- |
| 590.83 | 1.14 | 9.95 | -0.212 | 3 | -- | 1.88 | -- | 0.231 | 7.5 | -- | -- | -- | -- |
| 600.56 | 1.15 | 9.95 | -0.169 | 3.01 | -- | -- | -- | 0.227 | 7.45 | -- | -- | -- | -- |
| 700.37 | 1.23 | 9.93 | 0.56 | -- | -3.65 | -- | -- | 0.649 | -- | 24.14 | 516 | -- | -- |
| 508.63 | 1.05 | 9.88 | -- | 2.41 | -2.22 | -- | -- | 0.571 | 8.36 | 20.73 | 262 | -- | -- |
| 1082.93 | 1.54 | 10 | -0.122 | -- | -- | -- | -- | 0.275 | -- | -- | -- | -- | -- |
| 601.31 | 1.15 | 9.94 | -- | 3 | -- | -- | -- | 0.245 | 7.45 | -- | -- | -- | -- |
| 708.23 | 1.24 | 9.95 | -- | -- | -3.55 | -- | -- | 0.573 | -- | 24.2 | 510 | -- | -- |
| 1083.32 | 1.54 | 10 | -- | -- | -- | -- | -- | 0.288 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 487.80 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 19 |
| 2 | 487.96 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 22 |
| 3 | 488.62 | temperature | 20 | 270 | > th | dose dependent | rect. | 5 | 20 |
| 5 | 489.28 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 12 |
| 6 | 489.42 | temperature | 25 | 4320 | < th | dose independent | rect. | 13 | 16 |
| 19 | 490.29 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 41 | 491.60 | temperature | 25 | 4320 | > th | dose independent | rect. | 13 | 16 |
| 116 | 494.98 | temperature | 25 | 4320 | < th | dose independent | sin | 15 | NA |
| 134 | 495.54 | temperature | 20 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 145 | 496.06 | temperature | 20 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 152 | 496.29 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 9 |
| 156 | 496.38 | temperature | 15 | 4320 | > th | dose dependent | rect. | 23 | 4 |
| 160 | 496.45 | temperature | 25 | 4320 | > th | dose independent | sin | 15 | NA |
| 161 | 496.48 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 4 |
| 169 | 496.62 | temperature | 15 | 4320 | > th | dose dependent | rect. | 23 | 2 |
| 180 | 496.73 | temperature | 10 | 4320 | > th | dose dependent | rect. | 1 | 2 |
| 191 | 496.92 | temperature | 30 | 4320 | < th | dose dependent | rect. | 1 | 2 |
| 234 | 497.43 | temperature | 10 | 720 | > th | dose dependent | sin | 3 | NA |
| 235 | 497.43 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 302 | 498.54 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 4 |
| 310 | 498.61 | temperature | 25 | 4320 | > th | dose independent | rect. | 18 | 11 |
| 325 | 498.75 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 22 |
| 385 | 499.22 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 13 |
| 419 | 499.46 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 15 |
| 424 | 499.49 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 10 |
| 474 | 499.80 | temperature | 25 | 1440 | < th | dose dependent | sin | 7 | NA |
| 581 | 500.38 | temperature | 25 | 720 | < th | dose independent | rect. | 1 | 14 |
| 597 | 500.43 | temperature | 25 | 4320 | < th | dose dependent | rect. | 10 | 19 |
| 600 | 500.44 | temperature | 25 | 4320 | < th | dose dependent | rect. | 12 | 16 |
| 668 | 500.67 | temperature | 25 | 720 | < th | dose independent | rect. | 1 | 18 |
| 723 | 500.91 | temperature | 25 | 4320 | < th | dose dependent | sin | 13 | NA |
| 821 | 501.24 | temperature | 30 | 720 | < th | dose dependent | sin | 2 | NA |
| 841 | 501.29 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 12 |
| 918 | 501.53 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 22 |