Os02g0626600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Phenylalanine ammonia-lyase family protein.
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Os02g0626600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Phenylalanine ammonia-lyase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 189.94 | 0.648 | 3.22 | -0.649 | 0.248 | 0.592 | 0.389 | -3.68 | 0.0898 | 9.81 | 93 | 200 | -- | -- |
| 200.17 | 0.659 | 3.19 | -0.673 | 0.0633 | 0.62 | 0.287 | -- | 0.133 | 9.87 | 87.95 | 614 | -- | -- |
| 190.52 | 0.643 | 3.22 | -0.636 | 0.247 | 0.595 | -- | -3.6 | 0.0939 | 9.88 | 93.01 | 193 | -- | -- |
| 200.17 | 0.659 | 3.19 | -0.688 | 0.0547 | 0.671 | -- | -- | 0.128 | 14 | 88 | 613 | -- | -- |
| 194.05 | 0.649 | 3.22 | -0.644 | -- | 0.655 | -- | -3.58 | 0.0971 | -- | 93 | 199 | -- | -- |
| 207.07 | 0.675 | 3.21 | -0.631 | 0.278 | -- | 0.178 | -- | 0.0211 | 9.13 | -- | -- | -- | -- |
| 207.15 | 0.674 | 3.21 | -0.626 | 0.281 | -- | -- | -- | 0.0205 | 8.77 | -- | -- | -- | -- |
| 200.33 | 0.659 | 3.19 | -0.691 | -- | 0.676 | -- | -- | 0.126 | -- | 87.9 | 632 | -- | -- |
| 212.5 | 0.679 | 3.18 | -- | 0.0729 | 0.595 | -- | -- | 0.183 | 13.3 | 88 | 611 | -- | -- |
| 211.62 | 0.68 | 3.22 | -0.626 | -- | -- | -- | -- | 0.0227 | -- | -- | -- | -- | -- |
| 217.47 | 0.69 | 3.19 | -- | 0.28 | -- | -- | -- | 0.0903 | 8.93 | -- | -- | -- | -- |
| 212.79 | 0.679 | 3.18 | -- | -- | 0.608 | -- | -- | 0.192 | -- | 88 | 632 | -- | -- |
| 221.95 | 0.695 | 3.2 | -- | -- | -- | -- | -- | 0.0921 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 184.89 | wind | 9 | 10 | > th | dose independent | rect. | 18 | 1 |
| 4 | 184.89 | wind | 9 | 10 | > th | dose dependent | rect. | 18 | 1 |
| 10 | 186.95 | wind | 9 | 90 | > th | dose dependent | rect. | 16 | 6 |
| 40 | 187.51 | wind | 9 | 90 | > th | dose independent | rect. | 17 | 9 |
| 49 | 187.52 | wind | 9 | 90 | > th | dose independent | rect. | 17 | 5 |
| 69 | 188.03 | wind | 9 | 90 | > th | dose independent | sin | 13 | NA |
| 78 | 189.01 | wind | 9 | 90 | > th | dose dependent | sin | 13 | NA |
| 79 | 189.02 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 80 | 189.10 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 82 | 189.40 | wind | 9 | 90 | > th | dose independent | rect. | 14 | 20 |
| 83 | 189.41 | wind | 9 | 90 | > th | dose independent | rect. | 14 | 12 |
| 91 | 189.42 | wind | 9 | 90 | > th | dose independent | rect. | 14 | 8 |
| 96 | 189.51 | wind | 7 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 97 | 189.55 | wind | 7 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 125 | 190.04 | wind | 7 | 4320 | < th | dose independent | rect. | 14 | 4 |
| 128 | 190.16 | wind | 7 | 4320 | > th | dose independent | rect. | 14 | 4 |
| 143 | 190.20 | wind | 9 | 90 | > th | dose independent | rect. | 14 | 4 |
| 149 | 190.28 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 9 |
| 151 | 190.36 | wind | 5 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 154 | 190.45 | radiation | 1 | 1440 | < th | dose dependent | rect. | 14 | 3 |
| 156 | 190.46 | wind | 5 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 167 | 190.63 | wind | 5 | 4320 | > th | dose dependent | rect. | 14 | 4 |
| 171 | 190.70 | radiation | 1 | 1440 | > th | dose independent | rect. | 12 | 5 |
| 174 | 190.73 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 5 |
| 182 | 190.78 | wind | 7 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 184 | 190.78 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 9 |
| 187 | 190.81 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 9 |
| 192 | 190.85 | humidity | 90 | 720 | > th | dose dependent | rect. | 9 | 15 |
| 196 | 190.92 | wind | 7 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 199 | 190.92 | wind | 9 | 90 | > th | dose dependent | rect. | 14 | 8 |
| 202 | 190.93 | wind | 9 | 90 | > th | dose dependent | rect. | 14 | 20 |
| 205 | 190.94 | wind | 9 | 90 | > th | dose dependent | rect. | 14 | 12 |
| 216 | 190.99 | humidity | 90 | 720 | > th | dose dependent | rect. | 11 | 13 |
| 218 | 191.01 | humidity | 90 | 720 | > th | dose dependent | rect. | 15 | 9 |
| 253 | 191.30 | wind | 9 | 90 | < th | dose independent | sin | 13 | NA |
| 258 | 191.32 | wind | 9 | 90 | > th | dose dependent | rect. | 14 | 4 |
| 262 | 191.35 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 3 |
| 263 | 191.35 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 3 |
| 288 | 191.54 | wind | 9 | 1440 | < th | dose dependent | rect. | 14 | 1 |
| 314 | 191.64 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 317 | 191.64 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 326 | 191.71 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 327 | 191.71 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 22 |
| 330 | 191.73 | radiation | 10 | 4320 | < th | dose dependent | rect. | 19 | 10 |
| 333 | 191.74 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 336 | 191.75 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 21 |
| 405 | 191.98 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 15 |
| 426 | 191.99 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 14 |
| 428 | 191.99 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 17 |
| 461 | 192.02 | wind | 5 | 1440 | < th | dose independent | rect. | 10 | 6 |
| 505 | 192.10 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 3 |
| 523 | 192.15 | wind | 5 | 1440 | > th | dose independent | rect. | 10 | 5 |
| 531 | 192.18 | wind | 3 | 1440 | > th | dose dependent | rect. | 10 | 8 |
| 535 | 192.21 | radiation | 1 | 1440 | > th | dose independent | sin | 20 | NA |
| 546 | 192.24 | wind | 9 | 1440 | < th | dose dependent | rect. | 11 | 5 |
| 549 | 192.25 | radiation | 1 | 1440 | < th | dose independent | sin | 20 | NA |
| 587 | 192.36 | wind | 9 | 1440 | < th | dose dependent | rect. | 13 | 5 |
| 668 | 192.55 | humidity | 90 | 720 | > th | dose dependent | sin | 18 | NA |
| 688 | 192.63 | wind | 9 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 694 | 192.64 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 14 |
| 695 | 192.64 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 16 |
| 696 | 192.64 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 19 |
| 793 | 192.87 | radiation | 10 | 4320 | < th | dose dependent | rect. | 23 | 6 |
| 825 | 192.95 | humidity | 90 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 1000 | 193.28 | radiation | 10 | 1440 | < th | dose dependent | sin | 19 | NA |