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Os02g0626100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Phenylalanine ammonia-lyase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 14.1 (0.0488) R2 : 0.261
β1 : -0.716 (0.179) R2dD : 0.027 R2D : 0.00771
β2 : 1.03 (0.127) R2dC : 0.107 R2C : 0.0797
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.82 (0.104) R2dN8 : 0.134 R2N8 : 0.129
σ : 0.918
deviance : 384.29
__
_____
C
peak time of C : 5.64
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
359.64 0.891 14.4 -3.89 1.04 2.33 1.38 -17.5 0.884 5.95 30.05 1323 -- --
377.37 0.912 14.1 -0.693 0.97 -0.579 1.21 -- 0.804 5.88 30.05 1323 -- --
364.11 0.889 14.4 -3.82 1.05 2.32 -- -17.2 0.863 5.9 29.86 1260 -- --
376.81 0.904 14.1 -0.725 1.03 0.418 -- -- 0.894 5.95 31.35 1107 -- --
420.34 0.955 14.4 -3.28 -- 2.08 -- -14.5 0.923 -- 30.08 1256 -- --
380.1 0.914 14.1 -0.723 1.03 -- 1.31 -- 0.825 5.74 -- -- -- --
384.29 0.918 14.1 -0.716 1.03 -- -- -- 0.82 5.64 -- -- -- --
420.81 0.96 14.1 -0.573 -- -1.04 -- -- 0.841 -- 27.29 1264 -- --
393.19 0.924 14.1 -- 1.01 0.312 -- -- 0.96 5.86 32.21 1067 -- --
439.65 0.98 14.1 -0.683 -- -- -- -- 0.844 -- -- -- -- --
397.79 0.933 14.1 -- 1.02 -- -- -- 0.899 5.67 -- -- -- --
428.84 0.968 14.1 -- -- -1.11 -- -- 0.908 -- 27.08 1260 -- --
451.94 0.992 14.1 -- -- -- -- -- 0.92 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 349.79 humidity 90 14400 < th dose independent rect. 2 3
5 351.94 humidity 90 14400 > th dose independent rect. 2 4
7 352.72 radiation 20 14400 < th dose independent rect. 3 3
9 353.15 humidity 90 14400 > th dose independent rect. 2 1
13 353.73 humidity 90 14400 > th dose independent rect. 4 1
14 354.03 humidity 80 14400 < th dose dependent rect. 21 12
19 354.33 wind 1 14400 > th dose independent rect. 1 2
20 354.72 radiation 20 14400 < th dose independent rect. 21 9
27 356.05 wind 3 720 < th dose independent rect. 5 4
32 356.66 humidity 70 720 > th dose independent rect. 19 6
36 357.09 wind 3 10 < th dose dependent rect. 2 21
38 357.10 wind 3 10 < th dose dependent rect. 2 12
40 357.21 humidity 80 14400 < th dose dependent rect. 3 5
43 357.29 temperature 10 720 > th dose dependent rect. 17 5
46 357.48 temperature 30 1440 < th dose independent rect. 16 9
47 357.49 temperature 25 720 > th dose dependent rect. 18 1
50 357.53 temperature 30 1440 > th dose independent rect. 16 3
68 357.58 radiation 1 720 > th dose dependent rect. 18 11
70 357.65 temperature 30 1440 < th dose independent rect. 16 4
73 357.70 temperature 30 1440 < th dose independent rect. 16 16
80 357.78 wind 1 90 < th dose dependent rect. 4 1
82 357.86 wind 1 14400 < th dose independent rect. 1 2
86 357.89 wind 1 14400 < th dose dependent rect. 7 1
92 358.02 temperature 30 1440 > th dose independent rect. 16 18
94 358.07 wind 7 720 < th dose independent rect. 22 9
95 358.07 temperature 30 1440 < th dose independent rect. 16 18
97 358.08 temperature 30 1440 < th dose independent rect. 16 21
98 358.09 wind 1 10 > th dose independent rect. 23 11
100 358.18 wind 1 90 < th dose independent rect. 4 1
102 358.20 wind 3 4320 > th dose independent rect. 5 4
104 358.25 radiation 20 14400 < th dose independent rect. 18 12
106 358.32 temperature 25 720 > th dose dependent rect. 17 6
107 358.33 wind 7 720 < th dose dependent rect. 5 4
109 358.35 humidity 80 14400 < th dose dependent rect. 20 6
114 358.48 temperature 30 1440 < th dose independent rect. 16 1
117 358.55 humidity 60 14400 > th dose independent rect. 21 9
119 358.56 temperature 30 1440 > th dose independent rect. 16 21
152 358.76 wind 3 4320 < th dose independent rect. 5 4
153 358.77 humidity 80 14400 < th dose dependent rect. 21 2
155 358.83 wind 7 720 < th dose independent rect. 5 12
161 358.95 temperature 30 720 < th dose dependent rect. 22 1
168 359.03 humidity 90 4320 > th dose dependent rect. 2 2
173 359.07 wind 3 10 < th dose dependent rect. 2 17
195 359.18 temperature 30 1440 > th dose independent sin 10 NA
196 359.18 wind 9 14400 > th dose dependent rect. 13 2
197 359.20 temperature 30 1440 < th dose independent sin 10 NA
200 359.24 humidity 80 4320 > th dose dependent rect. 24 14
215 359.41 radiation 1 720 > th dose independent rect. 18 11
235 359.58 wind 3 4320 > th dose independent rect. 8 1
238 359.61 temperature 20 720 > th dose independent rect. 10 9
240 359.62 humidity 70 720 < th dose dependent rect. 18 2
257 359.68 wind 7 30 < th dose independent rect. 5 23
262 359.71 wind 9 14400 > th dose dependent rect. 11 4
266 359.77 wind 9 14400 > th dose independent rect. 13 2
277 359.85 humidity 90 4320 < th dose dependent rect. 23 2
278 359.86 temperature 30 1440 > th dose dependent sin 13 NA
282 359.88 wind 3 720 < th dose independent rect. 5 2
290 359.91 humidity 70 720 < th dose independent rect. 19 1
303 359.93 temperature 25 270 > th dose independent rect. 13 21
304 359.93 temperature 30 1440 > th dose dependent rect. 15 4
323 359.96 temperature 30 1440 > th dose dependent rect. 15 19
324 359.97 temperature 30 1440 > th dose dependent rect. 12 7
345 360.01 wind 3 90 < th dose dependent rect. 2 3
347 360.02 radiation 20 14400 < th dose independent rect. 1 5
368 360.06 wind 9 14400 > th dose dependent rect. 9 6
397 360.11 temperature 30 1440 > th dose dependent rect. 15 23
433 360.18 wind 9 14400 > th dose independent rect. 11 4
451 360.21 temperature 30 1440 > th dose dependent no NA NA
550 360.23 radiation 1 720 < th dose dependent rect. 8 17
553 360.25 wind 3 10 < th dose dependent rect. 2 4
609 360.33 radiation 1 30 < th dose dependent rect. 4 12
649 360.42 humidity 90 4320 > th dose independent rect. 24 13
680 360.45 humidity 90 4320 > th dose independent rect. 24 16
682 360.45 wind 1 10 < th dose independent rect. 2 21
690 360.47 wind 3 10 < th dose dependent rect. 24 23
692 360.48 wind 7 720 < th dose independent rect. 19 15
696 360.52 temperature 20 90 > th dose dependent rect. 4 1
710 360.57 wind 1 10 > th dose independent sin 3 NA
732 360.66 humidity 90 4320 > th dose independent rect. 6 1
748 360.67 radiation 1 720 > th dose independent rect. 18 1
777 360.70 temperature 30 1440 > th dose dependent rect. 12 2
792 360.71 temperature 30 1440 < th dose independent rect. 12 1
797 360.72 radiation 1 720 > th dose dependent rect. 18 1
808 360.73 humidity 80 4320 > th dose dependent sin 5 NA
812 360.76 wind 7 720 < th dose independent rect. 5 10
816 360.78 humidity 50 1440 < th dose independent rect. 16 1
840 360.92 humidity 90 10 < th dose independent rect. 1 9
841 360.92 humidity 50 1440 < th dose dependent rect. 16 1
845 360.94 wind 3 14400 < th dose dependent rect. 2 1
847 360.95 temperature 30 1440 < th dose independent rect. 9 4
849 360.96 wind 3 4320 < th dose independent rect. 8 1
857 360.99 wind 9 14400 < th dose independent rect. 13 2
867 361.04 wind 9 14400 < th dose independent rect. 11 4
871 361.05 humidity 80 14400 < th dose independent rect. 20 12
922 361.17 wind 9 14400 > th dose independent rect. 9 6
931 361.20 temperature 30 1440 > th dose independent rect. 12 1
937 361.24 humidity 90 4320 > th dose independent sin 4 NA
938 361.24 temperature 30 1440 < th dose independent rect. 5 8
939 361.24 temperature 30 1440 < th dose independent rect. 23 14
940 361.24 wind 5 14400 < th dose dependent rect. 23 1
948 361.28 humidity 90 4320 > th dose independent rect. 4 5
949 361.28 wind 3 4320 > th dose independent rect. 1 8
962 361.33 humidity 60 14400 > th dose independent rect. 3 4
965 361.34 humidity 70 14400 < th dose independent rect. 8 1
969 361.35 temperature 30 1440 > th dose independent rect. 9 4
975 361.38 humidity 70 14400 > th dose independent rect. 8 1
981 361.40 wind 1 14400 > th dose dependent rect. 23 1
985 361.41 wind 1 10 < th dose independent rect. 2 16
993 361.43 wind 1 43200 > th dose independent rect. 7 1