BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0702400 Os11g0702400|AK105226
(170 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0702400 Zinc finger, C2H2-type domain containing protein 273 5e-74
Os03g0279700 Similar to ZPT2-12 87 6e-18
Os05g0114400 Zinc finger, C2H2-type domain containing protein 86 2e-17
Os11g0702300 Zinc finger, C2H2-type domain containing protein 77 5e-15
Os05g0461200 77 8e-15
Os01g0838600 Zinc finger, C2H2-type domain containing protein 76 1e-14
Os03g0820300 Similar to ZPT2-14 75 2e-14
Os03g0820000 74 3e-14
Os12g0583700 Zinc finger, C2H2-type domain containing protein 67 7e-12
Os03g0764100 Zinc finger transcription factor ZF1 66 1e-11
Os07g0588600 Zinc finger, C2H2-type domain containing protein 65 2e-11
Os05g0460900 65 3e-11
Os03g0437200 Zinc finger, C2H2-type domain containing protein 64 4e-11
Os03g0437100 Zinc finger, C2H2-type domain containing protein 63 9e-11
>Os11g0702400 Zinc finger, C2H2-type domain containing protein
Length = 170
Score = 273 bits (698), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 141/170 (82%), Positives = 141/170 (82%)
Query: 1 MEVATNTATRSPVKLMLVLTLSPASKVIAKGGGGVKRVHLDGGAFQCRTCGRRFSTFQAL 60
MEVATNTATRSPVKLMLVLTLSPASKVIAKGGGGVKRVHLDGGAFQCRTCGRRFSTFQAL
Sbjct: 1 MEVATNTATRSPVKLMLVLTLSPASKVIAKGGGGVKRVHLDGGAFQCRTCGRRFSTFQAL 60
Query: 61 GGHRTSHKRPRVRADGLDLLLGARPGKLGAGGASTPVVHRCDMCGKVFATGQALGGHMRR 120
GGHRTSHKRPRVRADGLDLLLGARPGKLGAGGASTPVVHRCDMCGKVFATGQALGGHMRR
Sbjct: 61 GGHRTSHKRPRVRADGLDLLLGARPGKLGAGGASTPVVHRCDMCGKVFATGQALGGHMRR 120
Query: 121 HRPLVSRNXXXXXXXXXXXXXXXXXXXXXXEERXXXXXXXVHNYNFIHFL 170
HRPLVSRN EER VHNYNFIHFL
Sbjct: 121 HRPLVSRNGTMSTTWTAAAAAAATMSGSSSEERDDDDDDDVHNYNFIHFL 170
>Os03g0279700 Similar to ZPT2-12
Length = 191
Score = 87.0 bits (214), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 54/82 (65%), Gaps = 11/82 (13%)
Query: 45 FQCRTCGRRFSTFQALGGHRTSHKRPRVRADGLDLLLGARPGKLGAGGASTPVVHRCDMC 104
F+C+TC R+F +FQALGGHR SHK+PR+ AD G A + P VH C +C
Sbjct: 51 FECKTCNRQFPSFQALGGHRASHKKPRL-AD----------GDPAAEAPAKPKVHGCSIC 99
Query: 105 GKVFATGQALGGHMRRHRPLVS 126
G FA GQALGGHMRRHR +++
Sbjct: 100 GLEFAVGQALGGHMRRHRAVMA 121
>Os05g0114400 Zinc finger, C2H2-type domain containing protein
Length = 198
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 52/82 (63%), Gaps = 13/82 (15%)
Query: 44 AFQCRTCGRRFSTFQALGGHRTSHKRPRVRADGLDLLLGARPGKLGAGGASTPVVHRCDM 103
AF C+TC R F +FQALGGHR SHK+PR+ DG DL L S P +H C +
Sbjct: 50 AFVCKTCNRVFPSFQALGGHRASHKKPRLDGDG-DLSL------------SKPKLHGCSI 96
Query: 104 CGKVFATGQALGGHMRRHRPLV 125
CG FA GQALGGHMRRHR +
Sbjct: 97 CGLEFAIGQALGGHMRRHRAMT 118
>Os11g0702300 Zinc finger, C2H2-type domain containing protein
Length = 163
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 46/75 (61%), Gaps = 14/75 (18%)
Query: 49 TCGRRFSTFQALGGHRTSHKRPRVRADGLDLLLGARPGKLGAGGASTPVVHRCDMCGKVF 108
TCGRRF + QALGGHRTSH RP RP G S P++H C++CG F
Sbjct: 75 TCGRRFPSHQALGGHRTSHLRPTTNK--------RRP------GPSKPLIHACEVCGLGF 120
Query: 109 ATGQALGGHMRRHRP 123
GQALGGHMRRHRP
Sbjct: 121 QMGQALGGHMRRHRP 135
>Os05g0461200
Length = 198
Score = 76.6 bits (187), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 49/103 (47%), Positives = 52/103 (50%), Gaps = 25/103 (24%)
Query: 45 FQCRTCGRRFSTFQALGGHRTSHKRPRVRADGLDLLLGARPGKLGAGGASTPV------- 97
F+CRTCGRRF TFQALGGHR SHKRPR A+ G GAG A V
Sbjct: 33 FECRTCGRRFPTFQALGGHRASHKRPRHGAERAPRPAGDDDVGAGAGAALRLVGAASSLS 92
Query: 98 ------------------VHRCDMCGKVFATGQALGGHMRRHR 122
H C +CG FA GQALGGHMRRHR
Sbjct: 93 TDEARAGGGGRRTRGAGAAHGCPVCGLEFAVGQALGGHMRRHR 135
>Os01g0838600 Zinc finger, C2H2-type domain containing protein
Length = 217
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 45 FQCRTCGRRFSTFQALGGHRTSHKRPRVRADGLDLLLGARPGKLGAGG---------AST 95
F+C+TC R+F TFQALGGHR SHKRPR + G +
Sbjct: 59 FECKTCNRQFPTFQALGGHRASHKRPRQQQQHALGGGAGADDAGLCLGRQPTPPRPQPAK 118
Query: 96 PVVHRCDMCGKVFATGQALGGHMRRHR 122
P VH C +CG F GQALGGHMRRHR
Sbjct: 119 PRVHECPVCGLEFPIGQALGGHMRRHR 145
>Os03g0820300 Similar to ZPT2-14
Length = 170
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 52/82 (63%), Gaps = 4/82 (4%)
Query: 43 GAFQCRTCGRRFSTFQALGGHRTSHKRPRVRADGLDL-LLGARPGKLG-AGGASTPVVHR 100
G F C+TC R F TFQALGGHRTSH R R++GLDL +G + +L A H
Sbjct: 53 GEFVCKTCSRAFPTFQALGGHRTSHLRG--RSNGLDLGAIGDKAIRLHRAADKEHRDKHE 110
Query: 101 CDMCGKVFATGQALGGHMRRHR 122
C +CG F GQALGGHMRRHR
Sbjct: 111 CHICGLGFEMGQALGGHMRRHR 132
>Os03g0820000
Length = 186
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 50/89 (56%), Gaps = 11/89 (12%)
Query: 45 FQCRTCGRRFSTFQALGGHRTSHKRPRVRADGLDLLLGARPGKLGAG------GASTPVV 98
F+C+TC RRF +FQALGGHR SHKRPR G A G A TP V
Sbjct: 48 FECKTCRRRFPSFQALGGHRASHKRPRGGGGGGAAAAVAAAAGEGEAGVALSLAAGTPAV 107
Query: 99 -----HRCDMCGKVFATGQALGGHMRRHR 122
H C +CG FA GQALGGHMRRHR
Sbjct: 108 KASRAHGCAVCGVEFALGQALGGHMRRHR 136
>Os12g0583700 Zinc finger, C2H2-type domain containing protein
Length = 247
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 50/86 (58%), Gaps = 10/86 (11%)
Query: 46 QCRTCGRRFSTFQALGGHRTSHKRPRVRA--DGLDLLLGARPGKLGAGGASTPV------ 97
+C CG+ F+++QALGGH+ SH++P A D ++++ +P + +S
Sbjct: 92 RCSVCGKAFASYQALGGHKASHRKPPPPAMVDDDEVVVETKPAAIATPSSSASGVSGGGG 151
Query: 98 --VHRCDMCGKVFATGQALGGHMRRH 121
H C++CGK F TGQALGGH R H
Sbjct: 152 GRAHECNVCGKAFPTGQALGGHKRCH 177
>Os03g0764100 Zinc finger transcription factor ZF1
Length = 269
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 48/95 (50%), Gaps = 15/95 (15%)
Query: 42 GGAFQCRTCGRRFSTFQALGGHRTSH--KRPRVRADGLDLLLGA----------RPGKLG 89
G F+C CG+ FS++QALGGH+TSH K P A + P
Sbjct: 94 GAEFKCSVCGKSFSSYQALGGHKTSHRVKLPTPPAAPVLAPAPVAALLPSAEDREPATSS 153
Query: 90 AGGAS---TPVVHRCDMCGKVFATGQALGGHMRRH 121
+S T VHRC +C K F TGQALGGH R+H
Sbjct: 154 TAASSDGMTNRVHRCSICQKEFPTGQALGGHKRKH 188
>Os07g0588600 Zinc finger, C2H2-type domain containing protein
Length = 220
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 57/107 (53%), Gaps = 8/107 (7%)
Query: 15 LMLVLTLSPASKVIAKGGGGVKRVHLDGGAFQCRTCGRRFSTFQALGGHRTSHKRPRVRA 74
LML + ++V+ K H ++C CG+ + ++QALGGH+TSH++P A
Sbjct: 61 LMLAHGVRDEAEVVGVAAATAKPQH----GYECSVCGKVYGSYQALGGHKTSHRKPPSPA 116
Query: 75 DGLDLLLGARPGKLGAGGASTPVVHRCDMCGKVFATGQALGGHMRRH 121
+ G P G G + VHRC +C + F +GQALGGH R H
Sbjct: 117 --AEPAAGEEPSSGGVAGEAK--VHRCSICLRTFPSGQALGGHKRLH 159
>Os05g0460900
Length = 174
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 21 LSPASKVIAKGGGGVK-RVHLDGGA-------FQCRTCGRRFSTFQALGGHRTSHKRPRV 72
++ + + +G GG++ H+ GG F+C+TC + F++FQALGGHRT H R
Sbjct: 1 MASGQRAVGEGSGGLRPTTHVAGGGGSARGEYFRCKTCSKTFTSFQALGGHRTGHTRMAA 60
Query: 73 RADGLDLLLGARPGKLGAGG---ASTPVVHRCDMCGKVFATGQALGGHMRRHR 122
R GA S H C +CG F GQALGGHMRRHR
Sbjct: 61 RQRQEHGAAGAAVVGATNNQRRVVSAHQWHLCAVCGVEFRMGQALGGHMRRHR 113
>Os03g0437200 Zinc finger, C2H2-type domain containing protein
Length = 220
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 8/85 (9%)
Query: 45 FQCRTCGRRFSTFQALGGHRTSHKRPRVRAD--------GLDLLLGARPGKLGAGGASTP 96
F+C CG+ F+++QALGGH++SH++P D G + A +
Sbjct: 73 FRCTVCGKAFASYQALGGHKSSHRKPPSPGDHYGAAAAAQQLASAGDSKEDSASSAAGST 132
Query: 97 VVHRCDMCGKVFATGQALGGHMRRH 121
HRC +C + FATGQALGGH R H
Sbjct: 133 GPHRCTICRRSFATGQALGGHKRCH 157
>Os03g0437100 Zinc finger, C2H2-type domain containing protein
Length = 200
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 45 FQCRTCGRRFSTFQALGGHRTSHKRPRVRADGLDLLLGARPGKLGAGGASTPVV------ 98
F+C CG+ F + QALGGH+ SH++P A + ++ P +S+
Sbjct: 48 FRCSVCGKAFPSHQALGGHKASHRKPPTAALPMHVIDAPPPPSAEDTASSSTTTTTSGGG 107
Query: 99 -HRCDMCGKVFATGQALGGHMRRH 121
HRC +C + FATGQALGGH R H
Sbjct: 108 RHRCSVCHRTFATGQALGGHKRCH 131
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.139 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,632,932
Number of extensions: 253847
Number of successful extensions: 1241
Number of sequences better than 1.0e-10: 18
Number of HSP's gapped: 1212
Number of HSP's successfully gapped: 18
Length of query: 170
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 76
Effective length of database: 12,127,685
Effective search space: 921704060
Effective search space used: 921704060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 152 (63.2 bits)