Os01g0838600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, C2H2-type domain containing protein.
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Os01g0838600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, C2H2-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 101.29 | 0.473 | 10.6 | -1.45 | 0.963 | 1.42 | 0.965 | -3.91 | 0.0651 | 6.49 | 25.5 | 1347 | -- | -- |
| 117.07 | 0.504 | 10.5 | -0.393 | 0.967 | 1.28 | 0.756 | -- | 0.336 | 5.96 | 25.4 | 1436 | -- | -- |
| 103.45 | 0.474 | 10.6 | -1.41 | 0.974 | 1.4 | -- | -3.77 | 0.0717 | 6.27 | 25.51 | 1366 | -- | -- |
| 117.18 | 0.504 | 10.5 | -0.322 | 0.971 | 1.19 | -- | -- | 0.381 | 6.14 | 25.5 | 1412 | -- | -- |
| 151.35 | 0.573 | 10.6 | -1.38 | -- | 1.59 | -- | -3.82 | 0.0624 | -- | 25.6 | 1304 | -- | -- |
| 153.55 | 0.581 | 10.4 | 0.0791 | 1.07 | -- | 0.704 | -- | 0.839 | 5.94 | -- | -- | -- | -- |
| 154.66 | 0.582 | 10.4 | 0.0836 | 1.08 | -- | -- | -- | 0.836 | 5.8 | -- | -- | -- | -- |
| 165.97 | 0.6 | 10.5 | -0.282 | -- | 1.28 | -- | -- | 0.418 | -- | 25.52 | 1328 | -- | -- |
| 118.5 | 0.507 | 10.5 | -- | 0.988 | 1.08 | -- | -- | 0.487 | 6.11 | 25.6 | 1420 | -- | -- |
| 214.74 | 0.685 | 10.4 | 0.117 | -- | -- | -- | -- | 0.861 | -- | -- | -- | -- | -- |
| 154.84 | 0.582 | 10.4 | -- | 1.08 | -- | -- | -- | 0.827 | 5.8 | -- | -- | -- | -- |
| 167.9 | 0.603 | 10.5 | -- | -- | 1.22 | -- | -- | 0.47 | -- | 25.54 | 1310 | -- | -- |
| 215.1 | 0.685 | 10.4 | -- | -- | -- | -- | -- | 0.848 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 95.84 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 2 | 96.29 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 8 | 100.79 | temperature | 25 | 1440 | > th | dose independent | sin | 15 | NA |
| 9 | 100.80 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 8 |
| 16 | 101.22 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 11 |
| 18 | 101.26 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 9 |
| 21 | 101.34 | temperature | 25 | 1440 | < th | dose independent | sin | 15 | NA |
| 46 | 102.39 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 16 |
| 51 | 102.54 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 54 | 102.62 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 22 |
| 55 | 102.63 | temperature | 25 | 1440 | > th | dose independent | rect. | 9 | 22 |
| 64 | 102.77 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 21 |
| 68 | 102.88 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 16 |
| 74 | 102.91 | temperature | 25 | 1440 | > th | dose independent | rect. | 9 | 17 |
| 91 | 103.07 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 94 | 103.10 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 3 |
| 125 | 103.40 | temperature | 25 | 1440 | > th | dose independent | rect. | 5 | 21 |
| 130 | 103.43 | temperature | 25 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 161 | 103.63 | temperature | 25 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 167 | 103.68 | temperature | 25 | 1440 | < th | dose independent | rect. | 9 | 17 |
| 173 | 103.72 | temperature | 25 | 1440 | > th | dose independent | no | NA | NA |
| 174 | 103.73 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 3 |
| 186 | 103.83 | temperature | 25 | 1440 | < th | dose independent | rect. | 5 | 21 |
| 207 | 103.91 | temperature | 25 | 1440 | > th | dose dependent | sin | 13 | NA |
| 228 | 104.02 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 20 |
| 269 | 104.17 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 16 |
| 271 | 104.18 | temperature | 25 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 274 | 104.19 | temperature | 25 | 1440 | > th | dose independent | rect. | 20 | 23 |
| 276 | 104.20 | temperature | 25 | 1440 | < th | dose independent | no | NA | NA |
| 277 | 104.20 | temperature | 25 | 1440 | > th | dose independent | rect. | 20 | 3 |
| 330 | 104.39 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 3 |
| 382 | 104.56 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 467 | 104.74 | temperature | 25 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 501 | 104.81 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 9 |
| 588 | 105.00 | wind | 5 | 43200 | < th | dose independent | rect. | 10 | 6 |
| 602 | 105.03 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 619 | 105.06 | wind | 3 | 43200 | > th | dose dependent | rect. | 11 | 4 |
| 637 | 105.09 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 7 |
| 643 | 105.10 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 2 |
| 748 | 105.30 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 8 |
| 757 | 105.31 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 8 |
| 764 | 105.33 | radiation | 20 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 811 | 105.40 | radiation | 40 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 818 | 105.41 | radiation | 20 | 43200 | < th | dose independent | rect. | 18 | 15 |
| 821 | 105.42 | radiation | 20 | 43200 | < th | dose independent | rect. | 5 | 4 |
| 825 | 105.42 | radiation | 20 | 43200 | < th | dose independent | rect. | 21 | 12 |
| 834 | 105.43 | radiation | 20 | 43200 | < th | dose independent | rect. | 23 | 10 |
| 839 | 105.43 | temperature | 25 | 4320 | > th | dose dependent | rect. | 16 | 2 |
| 878 | 105.52 | humidity | 90 | 43200 | < th | dose independent | rect. | 15 | 10 |
| 902 | 105.56 | radiation | 40 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 927 | 105.60 | temperature | 25 | 4320 | > th | dose dependent | rect. | 15 | 4 |
| 968 | 105.67 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 3 |