BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0838600 Os01g0838600|AY266289
         (217 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0838600  Zinc finger, C2H2-type domain containing protein    287   4e-78
Os05g0461200                                                      107   8e-24
Os03g0279700  Similar to ZPT2-12                                   91   7e-19
Os03g0820000                                                       86   2e-17

>Os01g0838600 Zinc finger, C2H2-type domain containing protein
          Length = 217

 Score =  287 bits (734), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 152/217 (70%), Positives = 152/217 (70%)

Query: 1   MSKRSRSMWDMQEFVGSVDTARVLMXXXXXXXXXXXXXXXXXXXXXPVVVRGGAHDRVFE 60
           MSKRSRSMWDMQEFVGSVDTARVLM                     PVVVRGGAHDRVFE
Sbjct: 1   MSKRSRSMWDMQEFVGSVDTARVLMLLAQQSQHGLLGGGGFAAGAQPVVVRGGAHDRVFE 60

Query: 61  CKTCNRQFPTFQALGGHRASHKRPRQQQQHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           CKTCNRQFPTFQALGGHRASHKRPRQQQQH                              
Sbjct: 61  CKTCNRQFPTFQALGGHRASHKRPRQQQQHALGGGAGADDAGLCLGRQPTPPRPQPAKPR 120

Query: 121 VHECPVCGLEFPIGQALGGHMRRHRXXXXXXXXXXXXXXKNGDVGKAAAVKACDGGGVCL 180
           VHECPVCGLEFPIGQALGGHMRRHR              KNGDVGKAAAVKACDGGGVCL
Sbjct: 121 VHECPVCGLEFPIGQALGGHMRRHRAEAEAAATTTTTTTKNGDVGKAAAVKACDGGGVCL 180

Query: 181 DLNLTPSENRAKCRNVVGLGAGGQGVHKALAMLDCFL 217
           DLNLTPSENRAKCRNVVGLGAGGQGVHKALAMLDCFL
Sbjct: 181 DLNLTPSENRAKCRNVVGLGAGGQGVHKALAMLDCFL 217



>Os05g0461200 
          Length = 198

 Score =  107 bits (266), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 70/163 (42%), Positives = 76/163 (46%), Gaps = 37/163 (22%)

Query: 57  RVFECKTCNRQFPTFQALGGHRASHKRPRQQQQHXXXXXXXXXXXXXXXXXXXXXXXXXX 116
           RVFEC+TC R+FPTFQALGGHRASHKRPR   +                           
Sbjct: 31  RVFECRTCGRRFPTFQALGGHRASHKRPRHGAERAPRPAGDDDVGAGAGAALRLVGAASS 90

Query: 117 XXXX----------------VHECPVCGLEFPIGQALGGHMRRHRXXXXXXXXXXXXXXK 160
                                H CPVCGLEF +GQALGGHMRRHR               
Sbjct: 91  LSTDEARAGGGGRRTRGAGAAHGCPVCGLEFAVGQALGGHMRRHRAAA------------ 138

Query: 161 NGDVGKAAAVKACD-------GGGVCLDLNLTPSENRAKCRNV 196
            GDV  A  VK  D        GG+CLDLNLTPSEN  KCR+ 
Sbjct: 139 -GDVA-APRVKTDDVVVGDECTGGICLDLNLTPSENCDKCRHA 179



>Os03g0279700 Similar to ZPT2-12
          Length = 191

 Score = 90.9 bits (224), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 46/90 (51%), Positives = 52/90 (57%), Gaps = 20/90 (22%)

Query: 56  DRVFECKTCNRQFPTFQALGGHRASHKRPRQQQQHXXXXXXXXXXXXXXXXXXXXXXXXX 115
           +R+FECKTCNRQFP+FQALGGHRASHK+PR                              
Sbjct: 48  ERMFECKTCNRQFPSFQALGGHRASHKKPR--------------------LADGDPAAEA 87

Query: 116 XXXXXVHECPVCGLEFPIGQALGGHMRRHR 145
                VH C +CGLEF +GQALGGHMRRHR
Sbjct: 88  PAKPKVHGCSICGLEFAVGQALGGHMRRHR 117



>Os03g0820000 
          Length = 186

 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/91 (49%), Positives = 49/91 (53%), Gaps = 2/91 (2%)

Query: 57  RVFECKTCNRQFPTFQALGGHRASHKRPRQQQQHXXXXXXXXXXXXXXXXX--XXXXXXX 114
           RVFECKTC R+FP+FQALGGHRASHKRPR                               
Sbjct: 46  RVFECKTCRRRFPSFQALGGHRASHKRPRGGGGGGAAAAVAAAAGEGEAGVALSLAAGTP 105

Query: 115 XXXXXXVHECPVCGLEFPIGQALGGHMRRHR 145
                  H C VCG+EF +GQALGGHMRRHR
Sbjct: 106 AVKASRAHGCAVCGVEFALGQALGGHMRRHR 136



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.138    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,966,429
Number of extensions: 195355
Number of successful extensions: 821
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 816
Number of HSP's successfully gapped: 4
Length of query: 217
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 120
Effective length of database: 11,971,043
Effective search space: 1436525160
Effective search space used: 1436525160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 154 (63.9 bits)