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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0279700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to ZPT2-12.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.74 (0.0388) R2 : 0.4
β1 : 1.73 (0.152) R2dD : 0.211 R2D : 0.0128
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.43 (0.158) R2dE : 0.401 R2E : 0.194
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.106 (0.0876) R2dN8 : 0.003 R2N8 : -0.0234
σ : 0.712
deviance : 234
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 62.83
memory length : 2453
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
209 0.679 3.65 2.25 1.18 2.88 0.418 -4.5 0.32 15.2 31.45 353 -- --
222.87 0.695 3.73 1.52 1.14 2.8 1.24 -- 0.198 15.4 29.16 371 -- --
209.48 0.674 3.64 2.3 1.17 2.85 -- -4.74 0.334 15.2 31.35 354 -- --
227.04 0.702 3.72 1.53 1.15 2.77 -- -- 0.21 15.1 28.76 360 -- --
222.72 0.695 3.62 2.55 -- 2.74 -- -4.74 0.31 -- 35 1038 -- --
326.74 0.847 3.84 0.809 0.664 -- 0.199 -- -0.384 12.6 -- -- -- --
326.88 0.847 3.84 0.816 0.663 -- -- -- -0.383 12.5 -- -- -- --
234 0.712 3.74 1.73 -- 2.43 -- -- 0.106 -- 62.83 2453 -- --
284.33 0.79 3.78 -- 1.28 2 -- -- -0.139 13.3 29.91 391 -- --
354.51 0.88 3.85 0.793 -- -- -- -- -0.394 -- -- -- -- --
344.44 0.868 3.86 -- 0.651 -- -- -- -0.474 12.4 -- -- -- --
293.92 0.798 3.8 -- -- 2.02 -- -- -0.193 -- 33.58 1068 -- --
371.11 0.899 3.87 -- -- -- -- -- -0.482 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 198.55 radiation 1.0 14400 > th dose independent rect. 18 17
2 198.71 radiation 1.0 14400 < th dose independent rect. 18 17
4 198.98 radiation 1.0 14400 > th dose independent rect. 5 6
5 198.99 radiation 1.0 14400 < th dose independent rect. 5 6
10 199.19 radiation 1.0 14400 < th dose independent rect. 23 12
25 199.22 radiation 1.0 14400 < th dose independent rect. 3 8
78 199.85 radiation 1.0 14400 > th dose independent sin 9 NA
79 199.85 radiation 1.0 14400 < th dose independent sin 9 NA
117 200.37 radiation 1.0 14400 < th dose dependent rect. 5 6
184 201.65 radiation 1.0 14400 < th dose dependent rect. 19 16
225 202.04 humidity 90.0 43200 > th dose independent rect. 6 1
248 202.42 humidity 90.0 43200 < th dose independent rect. 6 4
254 202.47 radiation 1.0 4320 > th dose dependent rect. 5 1
263 202.66 humidity 90.0 43200 < th dose independent rect. 6 6
276 202.97 radiation 1.0 14400 < th dose dependent sin 8 NA
326 203.34 radiation 1.0 14400 > th dose dependent rect. 18 1
341 203.48 humidity 90.0 43200 > th dose independent rect. 6 4
345 203.55 humidity 90.0 43200 > th dose independent rect. 6 6
356 203.87 temperature 15.0 720 > th dose dependent rect. 20 19
374 204.20 humidity 90.0 43200 < th dose independent rect. 7 1
397 204.51 radiation 1.0 14400 < th dose dependent rect. 17 18
403 204.62 radiation 20.0 4320 < th dose dependent rect. 5 1
433 205.03 wind 9.0 43200 < th dose independent rect. 8 15
436 205.04 wind 9.0 43200 > th dose independent rect. 9 18
440 205.12 radiation 20.0 4320 < th dose dependent rect. 19 11
441 205.13 radiation 1.0 14400 > th dose independent rect. 5 14
451 205.14 radiation 1.0 14400 > th dose independent no NA NA
502 205.19 radiation 40.0 4320 < th dose independent rect. 7 2
507 205.23 wind 9.0 43200 > th dose independent rect. 11 22
516 205.34 wind 9.0 43200 < th dose independent rect. 11 22
517 205.35 radiation 40.0 4320 < th dose independent rect. 16 17
539 205.45 wind 9.0 43200 < th dose independent rect. 8 19
558 205.52 precipitation 0.1 43200 < th dose independent rect. 6 1
559 205.52 wind 9.0 43200 > th dose independent rect. 8 15
561 205.52 precipitation 0.1 43200 < th dose dependent rect. 6 1
578 205.67 radiation 1.0 14400 < th dose independent no NA NA
580 205.67 radiation 1.0 14400 < th dose independent rect. 4 21
581 205.67 radiation 1.0 14400 < th dose independent rect. 23 21
583 205.67 wind 9.0 43200 < th dose independent rect. 9 22
593 205.68 radiation 1.0 14400 < th dose independent rect. 3 18
603 205.68 radiation 1.0 14400 < th dose independent rect. 20 23
606 205.69 radiation 1.0 14400 < th dose independent rect. 3 16
630 205.70 radiation 1.0 14400 < th dose independent rect. 5 14
643 205.75 radiation 1.0 14400 > th dose independent rect. 8 23
644 205.76 radiation 40.0 4320 < th dose independent rect. 23 10
650 205.79 humidity 90.0 43200 > th dose dependent rect. 6 6
652 205.81 wind 5.0 43200 > th dose dependent rect. 5 2
657 205.83 radiation 20.0 4320 < th dose dependent rect. 23 7
673 205.88 wind 7.0 43200 > th dose dependent rect. 8 15
681 205.95 wind 7.0 43200 > th dose dependent rect. 9 18
689 205.99 humidity 60.0 43200 > th dose independent rect. 15 8
692 206.01 humidity 90.0 14400 > th dose dependent rect. 22 4
694 206.03 humidity 90.0 43200 > th dose dependent rect. 9 1
698 206.06 humidity 60.0 43200 < th dose independent rect. 15 9
712 206.09 wind 9.0 43200 > th dose independent rect. 14 18
723 206.11 humidity 70.0 43200 < th dose dependent rect. 17 1
731 206.15 precipitation 0.1 43200 > th dose independent rect. 6 1
733 206.15 precipitation 0.1 43200 > th dose dependent rect. 6 1
741 206.18 humidity 90.0 43200 > th dose independent rect. 8 2
761 206.22 wind 9.0 43200 > th dose dependent sin 16 NA
769 206.25 radiation 1.0 14400 < th dose independent rect. 8 23
771 206.25 wind 9.0 43200 > th dose dependent rect. 14 17
799 206.43 wind 9.0 43200 > th dose independent sin 22 NA
802 206.44 humidity 90.0 14400 < th dose independent rect. 21 5
809 206.45 wind 9.0 43200 < th dose independent rect. 14 18
842 206.58 wind 9.0 43200 > th dose dependent rect. 11 21
868 206.68 wind 9.0 43200 < th dose independent sin 22 NA
873 206.70 radiation 1.0 14400 > th dose independent rect. 17 2
886 206.71 wind 7.0 43200 > th dose dependent sin 22 NA
889 206.73 wind 7.0 43200 > th dose independent rect. 17 20
893 206.76 wind 7.0 43200 > th dose dependent rect. 9 22
915 206.87 temperature 20.0 43200 < th dose dependent rect. 5 1
926 206.93 wind 5.0 43200 < th dose independent rect. 5 1
941 206.99 temperature 30.0 720 < th dose dependent rect. 16 21
946 207.02 wind 7.0 43200 < th dose independent rect. 17 20
968 207.07 wind 5.0 43200 > th dose dependent rect. 9 3
977 207.12 humidity 60.0 43200 < th dose independent rect. 16 1
998 207.20 wind 7.0 43200 < th dose independent rect. 5 7