FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0583700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, C2H2-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.2 (0.0379) R2 : 0.486
β1 : 1.75 (0.14) R2dD : 0.188 R2D : 0.0335
β2 : 0.832 (0.0906) R2dC : 0.095 R2C : 0.0597
β3 : -1.44 (0.137) R2dE : 0.133 R2E : 0.0899
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.878 (0.0814) R2dN8 : 0.18 R2N8 : 0.128
σ : 0.705
deviance : 229.2
__
_____
C
peak time of C : 22.5
E
wheather : atmosphere
threshold : 999
memory length : 5210
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
213.92 0.687 5.23 1.71 0.845 -1.07 1.64 -2.34 0.897 22.4 999 5289 -- --
218.05 0.688 5.2 1.81 0.844 -1.45 1.7 -- 0.879 22.3 999 5210 -- --
224.7 0.698 5.23 1.65 0.843 -1.05 -- -2.44 0.894 22.5 998.9 5290 -- --
229.2 0.705 5.2 1.75 0.832 -1.44 -- -- 0.878 22.5 999 5210 -- --
267.4 0.762 5.21 1.66 -- -1.07 -- -2.27 0.89 -- 998.9 5410 -- --
274.48 0.777 5.17 1.56 0.85 -- 1.6 -- 1.01 22.3 -- -- -- --
284.83 0.79 5.17 1.5 0.84 -- -- -- 1.01 22.5 -- -- -- --
269.32 0.764 5.18 1.8 -- -1.69 -- -- 0.875 -- 998.2 10315 -- --
305.25 0.814 5.25 -- 0.858 -1.4 -- -- 0.688 22.4 999 8060 -- --
328.09 0.846 5.15 1.51 -- -- -- -- 1.01 -- -- -- -- --
343.98 0.868 5.21 -- 0.85 -- -- -- 0.842 22.6 -- -- -- --
347.88 0.869 5.22 -- -- -1.48 -- -- 0.697 -- 998.7 8332 -- --
388.45 0.92 5.19 -- -- -- -- -- 0.844 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 209.70 atmosphere 1000 4320 < th dose independent rect. 11 3
2 209.74 atmosphere 1000 4320 < th dose independent rect. 12 1
5 209.86 atmosphere 1000 4320 > th dose independent rect. 11 2
6 209.87 wind 9 4320 < th dose independent rect. 16 5
10 210.21 wind 7 4320 > th dose dependent rect. 17 11
28 210.90 wind 7 4320 > th dose dependent rect. 17 8
34 211.10 wind 7 4320 > th dose dependent rect. 17 5
46 211.43 wind 9 4320 < th dose independent rect. 16 12
61 211.83 atmosphere 1000 4320 < th dose independent rect. 10 10
77 212.02 atmosphere 1000 4320 > th dose independent rect. 10 10
125 212.59 wind 9 4320 > th dose independent rect. 16 12
130 212.65 wind 9 4320 > th dose independent rect. 16 5
151 212.88 atmosphere 1000 4320 < th dose independent sin 22 NA
176 213.07 atmosphere 1000 4320 > th dose independent sin 22 NA
216 213.50 atmosphere 1005 4320 < th dose dependent rect. 10 1
230 213.62 atmosphere 1005 4320 < th dose dependent rect. 10 3
252 213.81 atmosphere 995 14400 < th dose independent rect. 17 2
265 213.82 atmosphere 995 14400 < th dose dependent rect. 16 1
266 213.82 atmosphere 995 14400 < th dose dependent rect. 18 1
312 214.11 atmosphere 995 14400 > th dose independent rect. 16 1
337 214.28 wind 5 4320 > th dose dependent rect. 20 1
458 214.98 wind 9 4320 < th dose independent rect. 19 2
479 215.06 atmosphere 1000 4320 > th dose independent rect. 19 1
558 215.27 wind 7 4320 > th dose independent rect. 20 1
566 215.29 wind 7 4320 > th dose dependent rect. 20 7
608 215.42 wind 7 4320 > th dose dependent rect. 20 5
706 215.73 wind 7 4320 > th dose independent rect. 20 7
751 215.84 atmosphere 1000 4320 < th dose independent rect. 18 23
762 215.88 atmosphere 1000 4320 < th dose independent no NA NA
763 215.88 wind 7 4320 > th dose independent rect. 20 5
801 216.00 atmosphere 1000 4320 > th dose independent rect. 18 23
802 216.00 atmosphere 1000 4320 < th dose independent rect. 15 23
807 216.02 atmosphere 1000 4320 > th dose independent no NA NA
873 216.13 atmosphere 1000 4320 > th dose independent rect. 15 23
987 216.42 atmosphere 1005 4320 < th dose dependent sin 0 NA