BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0583700 Os12g0583700|AY219847
(247 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0583700 Zinc finger, C2H2-type domain containing protein 211 5e-55
Os03g0610400 Zinc finger, C2H2-type domain containing protein 100 8e-22
Os03g0764100 Zinc finger transcription factor ZF1 87 1e-17
Os03g0437200 Zinc finger, C2H2-type domain containing protein 87 1e-17
Os03g0437100 Zinc finger, C2H2-type domain containing protein 82 3e-16
Os07g0590100 Zinc finger, C2H2-type domain containing protein 78 5e-15
Os07g0588600 Zinc finger, C2H2-type domain containing protein 73 2e-13
>Os12g0583700 Zinc finger, C2H2-type domain containing protein
Length = 247
Score = 211 bits (536), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 119/225 (52%), Positives = 119/225 (52%)
Query: 23 THXXXXXXXXXXXQVEGWGXXXXXXXXXPQLPPSEEEYLALCLLMLXXXXXXXXXXXXXX 82
TH QVEGWG PQLPPSEEEYLALCLLML
Sbjct: 23 THGGGGGGGGGGGQVEGWGKRKRSRRRRPQLPPSEEEYLALCLLMLARGRRDGDDVAASA 82
Query: 83 XXXXXXXEHRCSVCGKAFASYQALGGHKASHRKPPPPAMVDDDEVVVETKXXXXXXXXXX 142
EHRCSVCGKAFASYQALGGHKASHRKPPPPAMVDDDEVVVETK
Sbjct: 83 SAAAAAVEHRCSVCGKAFASYQALGGHKASHRKPPPPAMVDDDEVVVETKPAAIATPSSS 142
Query: 143 XXXXXXXXXXRAHECNVCGKAFPTGQALGGHKRCHYDGTIXXXXXXXXXXXXXXXXXXXX 202
RAHECNVCGKAFPTGQALGGHKRCHYDGTI
Sbjct: 143 ASGVSGGGGGRAHECNVCGKAFPTGQALGGHKRCHYDGTIGSAAGAGASKPAAKTTVAVA 202
Query: 203 XXRGFXXXXXXXXXXXXXXXXXXXXXXXEVLSPLAFKKPRLMIPA 247
RGF EVLSPLAFKKPRLMIPA
Sbjct: 203 ASRGFDLNLPALPDVAAAADQRCAAEDDEVLSPLAFKKPRLMIPA 247
>Os03g0610400 Zinc finger, C2H2-type domain containing protein
Length = 238
Score = 100 bits (250), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 77/197 (39%), Positives = 85/197 (43%), Gaps = 25/197 (12%)
Query: 56 SEEEYLALCLLMLXXXXXXXXXXXXXXXXXXXXXEHRCSVCGKAFASYQALGGHKASHRK 115
SEEE+LAL LLML +H CSVCG+ F+SYQALGGHK SHR
Sbjct: 62 SEEEHLALSLLMLARGHRDPSPAPQE--------QHGCSVCGRVFSSYQALGGHKTSHRP 113
Query: 116 PPPPAMVDDDEVVVE----TKXXXXXXXXXXXXXXXXXXXXRAHECNVCGKAFPTGQALG 171
PP M VVV+ T + HEC+VC K FPTGQALG
Sbjct: 114 RTPPTMAAV--VVVDEPAATTASPAASSSNSGSGSGGGGGNKVHECSVCKKTFPTGQALG 171
Query: 172 GHKRCHYDGTIXXXXXXXXXXXXXXXXXXXXXXRGFXXXXXXXXXXXXXXXXXXXXXXXE 231
GHKRCHY+G I E
Sbjct: 172 GHKRCHYEGPIGSGGGAAVAGRGF----------DLNLPAVALPDIMTERCLPAAAEEEE 221
Query: 232 VLSPLA-FKKPRLMIPA 247
VLSPLA FKKPRLMIPA
Sbjct: 222 VLSPLASFKKPRLMIPA 238
>Os03g0764100 Zinc finger transcription factor ZF1
Length = 269
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 57/131 (43%), Gaps = 8/131 (6%)
Query: 57 EEEYLALCLLMLXXX---XXXXXXXXXXXXXXXXXXEHRCSVCGKAFASYQALGGHKASH 113
EEE LALCLLML E +CSVCGK+F+SYQALGGHK SH
Sbjct: 60 EEENLALCLLMLARGGHHRVQAPPPLSASAPPPAGAEFKCSVCGKSFSSYQALGGHKTSH 119
Query: 114 RKPPPPAMVDDDEVVVETKXXXXXX-----XXXXXXXXXXXXXXRAHECNVCGKAFPTGQ 168
R P R H C++C K FPTGQ
Sbjct: 120 RVKLPTPPAAPVLAPAPVAALLPSAEDREPATSSTAASSDGMTNRVHRCSICQKEFPTGQ 179
Query: 169 ALGGHKRCHYD 179
ALGGHKR HYD
Sbjct: 180 ALGGHKRKHYD 190
>Os03g0437200 Zinc finger, C2H2-type domain containing protein
Length = 220
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 52/91 (57%), Gaps = 3/91 (3%)
Query: 92 RCSVCGKAFASYQALGGHKASHRKPPPPAMVDDDEVVVETKXXXXXXXXXXXXXXXXXXX 151
RC+VCGKAFASYQALGGHK+SHRKPP P D +
Sbjct: 74 RCTVCGKAFASYQALGGHKSSHRKPPSPG--DHYGAAAAAQQLASAGDSKEDSASSAAGS 131
Query: 152 XRAHECNVCGKAFPTGQALGGHKRCHY-DGT 181
H C +C ++F TGQALGGHKRCHY DGT
Sbjct: 132 TGPHRCTICRRSFATGQALGGHKRCHYWDGT 162
>Os03g0437100 Zinc finger, C2H2-type domain containing protein
Length = 200
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/90 (51%), Positives = 52/90 (57%), Gaps = 4/90 (4%)
Query: 92 RCSVCGKAFASYQALGGHKASHRKPPPPAMVDDDEVVVETKXXXXXXXXXXXXXXXXXXX 151
RCSVCGKAF S+QALGGHKASHRKPP A+ V++
Sbjct: 49 RCSVCGKAFPSHQALGGHKASHRKPPTAALPMH---VIDAPPPPSAEDTASSSTTTTTSG 105
Query: 152 XRAHECNVCGKAFPTGQALGGHKRCHY-DG 180
H C+VC + F TGQALGGHKRCHY DG
Sbjct: 106 GGRHRCSVCHRTFATGQALGGHKRCHYWDG 135
>Os07g0590100 Zinc finger, C2H2-type domain containing protein
Length = 199
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/90 (48%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 92 RCSVCGKAFASYQALGGHKASHRKPP---PPAMVDDDEVVVETKXXXXXXXXXXXXXXXX 148
RCS+CGKAFASYQALGGHKASHRKP D VV
Sbjct: 46 RCSLCGKAFASYQALGGHKASHRKPSAAAAAPPAHRDVVVAAAPASSGRVAADADAASEA 105
Query: 149 XXXXRAHECNVCGKAFPTGQALGGHKRCHY 178
R H C++C + F TGQALGGHKR HY
Sbjct: 106 DGRRRRHVCSLCRRGFATGQALGGHKRFHY 135
>Os07g0588600 Zinc finger, C2H2-type domain containing protein
Length = 220
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 56/122 (45%), Gaps = 15/122 (12%)
Query: 60 YLALCLLMLXXXXXXXXXXXXXXXXXXXXXE-HRCSVCGKAFASYQALGGHKASHRKPPP 118
YLA CLLML + CSVCGK + SYQALGGHK SHRKPP
Sbjct: 55 YLAACLLMLAHGVRDEAEVVGVAAATAKPQHGYECSVCGKVYGSYQALGGHKTSHRKPPS 114
Query: 119 PAMVDDDEVVVETKXXXXXXXXXXXXXXXXXXXXRAHECNVCGKAFPTGQALGGHKRCHY 178
PA + H C++C + FP+GQALGGHKR HY
Sbjct: 115 PAAE--------------PAAGEEPSSGGVAGEAKVHRCSICLRTFPSGQALGGHKRLHY 160
Query: 179 DG 180
+G
Sbjct: 161 EG 162
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.138 0.450
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,106,048
Number of extensions: 125746
Number of successful extensions: 852
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 834
Number of HSP's successfully gapped: 7
Length of query: 247
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 149
Effective length of database: 11,918,829
Effective search space: 1775905521
Effective search space used: 1775905521
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)