Os03g0610400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, C2H2-type domain containing protein.
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Os03g0610400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, C2H2-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 213.23 | 0.686 | 7.82 | 0.802 | 1.23 | 1.36 | -0.238 | -0.686 | 0.0185 | 4.72 | 23.31 | 1514 | -- | -- |
| 212.21 | 0.678 | 7.83 | 0.693 | 1.07 | 1.52 | -0.361 | -- | -0.0136 | 5.11 | 22.28 | 1604 | -- | -- |
| 212.45 | 0.679 | 7.83 | 0.736 | 1.14 | 1.53 | -- | -0.422 | -0.00459 | 5.09 | 22.62 | 1591 | -- | -- |
| 212.49 | 0.679 | 7.83 | 0.713 | 1.07 | 1.53 | -- | -- | -0.0104 | 5.12 | 22.42 | 1605 | -- | -- |
| 215.07 | 0.683 | 7.88 | 0.64 | -- | 2.38 | -- | 0.211 | -0.0644 | -- | 6.896 | 1985 | -- | -- |
| 266.99 | 0.766 | 7.91 | 0.544 | 1.27 | -- | -0.463 | -- | -0.333 | 4.43 | -- | -- | -- | -- |
| 267.56 | 0.766 | 7.91 | 0.547 | 1.27 | -- | -- | -- | -0.331 | 4.38 | -- | -- | -- | -- |
| 214.66 | 0.682 | 7.86 | 0.614 | -- | 2.4 | -- | -- | -0.0564 | -- | 6.894 | 1976 | -- | -- |
| 224.92 | 0.698 | 7.84 | -- | 0.943 | 1.61 | -- | -- | -0.0637 | 5.47 | 19.87 | 1670 | -- | -- |
| 353.5 | 0.879 | 7.92 | 0.597 | -- | -- | -- | -- | -0.297 | -- | -- | -- | -- | -- |
| 275.45 | 0.776 | 7.92 | -- | 1.28 | -- | -- | -- | -0.392 | 4.37 | -- | -- | -- | -- |
| 222.6 | 0.695 | 7.87 | -- | -- | 2.45 | -- | -- | -0.102 | -- | 9.329 | 1976 | -- | -- |
| 362.91 | 0.889 | 7.93 | -- | -- | -- | -- | -- | -0.363 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 202.26 | humidity | 70 | 43200 | > th | dose dependent | rect. | 18 | 4 |
| 7 | 207.05 | temperature | 25 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 11 | 207.38 | temperature | 25 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 12 | 207.38 | temperature | 25 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 42 | 208.60 | wind | 1 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 50 | 208.68 | wind | 1 | 43200 | > th | dose independent | rect. | 15 | 9 |
| 59 | 208.80 | temperature | 25 | 43200 | < th | dose independent | rect. | 21 | 5 |
| 70 | 208.91 | radiation | 20 | 1440 | > th | dose independent | rect. | 11 | 6 |
| 86 | 208.95 | temperature | 30 | 43200 | < th | dose independent | rect. | 18 | 13 |
| 93 | 208.97 | temperature | 30 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 97 | 209.01 | temperature | 30 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 98 | 209.03 | temperature | 30 | 43200 | < th | dose independent | rect. | 17 | 16 |
| 132 | 209.20 | temperature | 30 | 43200 | > th | dose independent | rect. | 17 | 16 |
| 171 | 209.46 | temperature | 30 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 200 | 209.57 | temperature | 30 | 14400 | < th | dose independent | rect. | 6 | 4 |
| 202 | 209.60 | temperature | 30 | 14400 | < th | dose independent | rect. | 4 | 6 |
| 212 | 209.63 | temperature | 30 | 14400 | < th | dose independent | rect. | 2 | 8 |
| 236 | 209.78 | temperature | 30 | 14400 | > th | dose dependent | rect. | 18 | 16 |
| 255 | 209.97 | temperature | 30 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 261 | 209.98 | temperature | 30 | 43200 | > th | dose dependent | rect. | 17 | 19 |
| 270 | 210.02 | temperature | 30 | 43200 | > th | dose dependent | sin | 10 | NA |
| 272 | 210.03 | temperature | 30 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 317 | 210.17 | temperature | 30 | 43200 | < th | dose independent | sin | 10 | NA |
| 326 | 210.19 | wind | 1 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 330 | 210.20 | temperature | 30 | 43200 | > th | dose independent | sin | 10 | NA |
| 450 | 210.36 | radiation | 40 | 1440 | < th | dose dependent | rect. | 12 | 3 |
| 477 | 210.38 | temperature | 30 | 43200 | > th | dose dependent | no | NA | NA |
| 478 | 210.38 | temperature | 30 | 43200 | > th | dose dependent | rect. | 9 | 10 |
| 603 | 210.40 | temperature | 30 | 43200 | > th | dose dependent | sin | 23 | NA |
| 830 | 210.71 | humidity | 70 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 858 | 210.75 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 5 |
| 970 | 211.07 | humidity | 70 | 43200 | < th | dose independent | rect. | 14 | 1 |