BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0610400 Os03g0610400|AY305868
(238 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0610400 Zinc finger, C2H2-type domain containing protein 313 8e-86
Os12g0583700 Zinc finger, C2H2-type domain containing protein 137 5e-33
Os03g0764100 Zinc finger transcription factor ZF1 113 1e-25
Os07g0588600 Zinc finger, C2H2-type domain containing protein 94 1e-19
Os03g0437100 Zinc finger, C2H2-type domain containing protein 83 1e-16
Os07g0588700 Zinc finger, C2H2-type domain containing protein 83 2e-16
>Os03g0610400 Zinc finger, C2H2-type domain containing protein
Length = 238
Score = 313 bits (801), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 166/238 (69%), Positives = 166/238 (69%)
Query: 1 MAVEEVLDGXXXXXXXXXXXXGEEVGARKPQQRCGGAEGWXXXXXXXXXXXXXXXXXXXX 60
MAVEEVLDG GEEVGARKPQQRCGGAEGW
Sbjct: 1 MAVEEVLDGAAPMLSSSPAASGEEVGARKPQQRCGGAEGWSKRKRSRRRHRDRAAAPPPH 60
Query: 61 GSEEEHLALSLLMLARGHRDPSPAPQEQHGCSVCGRVFSSYQALGGHKTSHRPRTPPTMA 120
GSEEEHLALSLLMLARGHRDPSPAPQEQHGCSVCGRVFSSYQALGGHKTSHRPRTPPTMA
Sbjct: 61 GSEEEHLALSLLMLARGHRDPSPAPQEQHGCSVCGRVFSSYQALGGHKTSHRPRTPPTMA 120
Query: 121 AVVVVDEXXXXXXXXXXXXXXXXXXXXXXXXXKVHECSVCKKTFPTGQALGGHKRCHYEX 180
AVVVVDE KVHECSVCKKTFPTGQALGGHKRCHYE
Sbjct: 121 AVVVVDEPAATTASPAASSSNSGSGSGGGGGNKVHECSVCKKTFPTGQALGGHKRCHYEG 180
Query: 181 XXXXXXXXXXXXXXFDLNLPAVALPDIMTERCLPAAAEEEEVLSPLASFKKPRLMIPA 238
FDLNLPAVALPDIMTERCLPAAAEEEEVLSPLASFKKPRLMIPA
Sbjct: 181 PIGSGGGAAVAGRGFDLNLPAVALPDIMTERCLPAAAEEEEVLSPLASFKKPRLMIPA 238
>Os12g0583700 Zinc finger, C2H2-type domain containing protein
Length = 247
Score = 137 bits (346), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 92/198 (46%), Positives = 102/198 (51%), Gaps = 27/198 (13%)
Query: 62 SEEEHLALSLLMLARGHRDPSPAPQE--------QHGCSVCGRVFSSYQALGGHKTSHRP 113
SEEE+LAL LLMLARG RD +H CSVCG+ F+SYQALGGHK SHR
Sbjct: 56 SEEEYLALCLLMLARGRRDGDDVAASASAAAAAVEHRCSVCGKAFASYQALGGHKASHRK 115
Query: 114 RTPPTMAAVVVVDEXXXXXXXXXXXX-XXXXXXXXXXXXXKVHECSVCKKTFPTGQALGG 172
PP M V DE + HEC+VC K FPTGQALGG
Sbjct: 116 PPPPAM---VDDDEVVVETKPAAIATPSSSASGVSGGGGGRAHECNVCGKAFPTGQALGG 172
Query: 173 HKRCHYEXXXXXXXXXXXX------------XXXFDLNLPAVALPDIMTERCLPAAAEEE 220
HKRCHY+ FDLNLP ALPD+ AAE++
Sbjct: 173 HKRCHYDGTIGSAAGAGASKPAAKTTVAVAASRGFDLNLP--ALPDVAAAADQRCAAEDD 230
Query: 221 EVLSPLASFKKPRLMIPA 238
EVLSPLA FKKPRLMIPA
Sbjct: 231 EVLSPLA-FKKPRLMIPA 247
>Os03g0764100 Zinc finger transcription factor ZF1
Length = 269
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/212 (40%), Positives = 97/212 (45%), Gaps = 41/212 (19%)
Query: 63 EEEHLALSLLMLARG--HR---------DPSPAPQEQHGCSVCGRVFSSYQALGGHKTSH 111
EEE+LAL LLMLARG HR P + CSVCG+ FSSYQALGGHKTSH
Sbjct: 60 EEENLALCLLMLARGGHHRVQAPPPLSASAPPPAGAEFKCSVCGKSFSSYQALGGHKTSH 119
Query: 112 RPRTPPTMAAVVVVDEXXXXXXXXXXX---XXXXXXXXXXXXXXKVHECSVCKKTFPTGQ 168
R + P AA V+ +VH CS+C+K FPTGQ
Sbjct: 120 RVKLPTPPAAPVLAPAPVAALLPSAEDREPATSSTAASSDGMTNRVHRCSICQKEFPTGQ 179
Query: 169 ALGGHKRCHY---------------------EXXXXXXXXXXXXXXXFDLNLPAVALPDI 207
ALGGHKR HY E FDLNLPAV P+
Sbjct: 180 ALGGHKRKHYDGGVGAGAGASSTELLATVAAESEVGSSGNGQSATRAFDLNLPAV--PEF 237
Query: 208 MTERCLPAAA---EEEEVLSPLASFKKPRLMI 236
+ C EEEEV SPLA FKKPRL+
Sbjct: 238 VWRPCSKGKKMWDEEEEVQSPLA-FKKPRLLT 268
>Os07g0588600 Zinc finger, C2H2-type domain containing protein
Length = 220
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 81/192 (42%), Gaps = 49/192 (25%)
Query: 66 HLALSLLMLARGHRD---------PSPAPQEQHGCSVCGRVFSSYQALGGHKTSHRPRTP 116
+LA LLMLA G RD + PQ + CSVCG+V+ SYQALGGHKTSHR
Sbjct: 55 YLAACLLMLAHGVRDEAEVVGVAAATAKPQHGYECSVCGKVYGSYQALGGHKTSHRKPPS 114
Query: 117 PTMAAVVVVDEXXXXXXXXXXXXXXXXXXXXXXXXXKVHECSVCKKTFPTGQALGGHKRC 176
P KVH CS+C +TFP+GQALGGHKR
Sbjct: 115 PAAEPAA----------------GEEPSSGGVAGEAKVHRCSICLRTFPSGQALGGHKRL 158
Query: 177 HYE------------XXXXXXXXXXXXXXXFDLNLPAVALPDIMTERCLPAAAEEEEVLS 224
HYE FDLNLPA A A +E E
Sbjct: 159 HYEGGAVGDAVKEKNSLKTKAAVATAVLKDFDLNLPAAA----------TTAGDEAESSP 208
Query: 225 PLASFKKPRLMI 236
P A K+ RL++
Sbjct: 209 PEA--KRARLLL 218
>Os03g0437100 Zinc finger, C2H2-type domain containing protein
Length = 200
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 94/200 (47%), Gaps = 33/200 (16%)
Query: 62 SEEEHLALSLLMLAR---GHRDPS---------PAPQEQ---HGCSVCGRVFSSYQALGG 106
+ +++++L L+ LA+ G + P+ PAP+ + CSVCG+ F S+QALGG
Sbjct: 6 THDDYVSLCLMALAQAGVGGQWPAQKQQIDMAPPAPERELLRFRCSVCGKAFPSHQALGG 65
Query: 107 HKTSHRPRTPPTMAAVV-VVDEXXXXXXXXXXXXXXXXXXXXXXXXXKVHECSVCKKTFP 165
HK SH R PPT A + V+D H CSVC +TF
Sbjct: 66 HKASH--RKPPTAALPMHVIDAPPPPSAEDTASSSTTTTTSGGGR----HRCSVCHRTFA 119
Query: 166 TGQALGGHKRCHY-------EXXXXXXXXXXXXXXXFDLNLPAVALPDIMTERCLPAAAE 218
TGQALGGHKRCHY FDLNL V P+ + + E
Sbjct: 120 TGQALGGHKRCHYWDGLSVVSVTASASGSGSSSVRNFDLNLKPV--PETVAA-GVRRWGE 176
Query: 219 EEEVLSPLASFKKPRLMIPA 238
EEEV SPL FKK RL P+
Sbjct: 177 EEEVQSPL-PFKKRRLSSPS 195
>Os07g0588700 Zinc finger, C2H2-type domain containing protein
Length = 226
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 71/175 (40%), Gaps = 53/175 (30%)
Query: 62 SEEEHLALSLLMLARGHRDPSPA--------------------PQEQHGCSVCGRVFSSY 101
SEEE+LA SLLMLA G RD + Q + CSVCG+V+ Y
Sbjct: 50 SEEEYLATSLLMLAHGIRDETKDIRGMGDVKGVGVDTLELVKPSQRAYECSVCGKVYWCY 109
Query: 102 QALGGHKTSHRPRTPPTMAAVVVVDEXXXXXXXXXXXXXXXXXXXXXXXXXKVHECSVCK 161
QALGGH T HR A VV DE K H+CS+C+
Sbjct: 110 QALGGHMTCHRN----LFAQVVAGDELSSDRTMVV----------------KGHKCSICR 149
Query: 162 KTFPTGQALGGHKRCHY-------------EXXXXXXXXXXXXXXXFDLNLPAVA 203
FP+GQALGGH R HY FDLN+P VA
Sbjct: 150 LEFPSGQALGGHMRVHYVGGVEGGSVKEKNVVKTKVTGALKLVLKDFDLNVPVVA 204
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.134 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,903,278
Number of extensions: 226924
Number of successful extensions: 855
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 830
Number of HSP's successfully gapped: 7
Length of query: 238
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 140
Effective length of database: 11,918,829
Effective search space: 1668636060
Effective search space used: 1668636060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)