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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0590100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, C2H2-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.61 (0.0621) R2 : 0.152
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.69 (0.306) R2dE : 0.144 R2E : 0.147
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.169 (0.133) R2dN8 : 0.00446 R2N8 : 0.00744
σ : 1.16
deviance : 622.49
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 2.12
memory length : 1619
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 8.66
open length of G : 6.68

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
592.56 1.14 3.85 0.762 0.435 9.34 -1.47 19.5 -0.206 3.97 1.386 1527 8.88 6.92
703.36 1.24 3.6 -0.292 0.432 0.568 -1.78 -- -0.388 3.77 1.386 1527 8.88 6.92
597.91 1.14 3.85 0.884 0.44 9.44 -- 19.7 -0.195 4.15 1.384 1573 8.88 6.91
622.98 1.16 3.6 -0.268 0.346 2.08 -- -- -0.315 4.14 2.28 1617 8.95 6.37
607.64 1.15 3.85 0.863 -- 9.61 -- 20.2 -0.174 -- 1.417 1561 8.88 6.9
703.99 1.24 3.6 -0.306 0.426 -- -1.74 -- -0.392 3.81 -- -- -- --
712.56 1.25 3.6 -0.28 0.431 -- -- -- -0.383 4.53 -- -- -- --
621.82 1.16 3.62 0.131 -- 2.67 -- -- -0.197 -- 2.14 1619 8.62 6.7
613.38 1.15 3.58 -- 0.506 2.41 -- -- -0.144 4.2 2.14 1857 8.7 6.7
722.47 1.26 3.6 -0.264 -- -- -- -- -0.371 -- -- -- -- --
714.63 1.25 3.59 -- 0.426 -- -- -- -0.352 4.55 -- -- -- --
622.49 1.16 3.61 -- -- 2.69 -- -- -0.169 -- 2.12 1619 8.66 6.68
724.31 1.26 3.59 -- -- -- -- -- -0.342 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 607.57 radiation 1.0 1440 < th dose independent rect. 9 7
2 607.84 radiation 1.0 1440 < th dose independent rect. 11 5
6 608.53 radiation 1.0 1440 > th dose independent rect. 9 7
7 609.09 radiation 1.0 1440 < th dose dependent rect. 12 4
8 609.10 radiation 1.0 1440 > th dose independent rect. 11 5
16 611.17 radiation 1.0 1440 < th dose dependent rect. 15 1
19 612.19 radiation 1.0 1440 < th dose independent rect. 11 1
20 612.19 radiation 1.0 1440 < th dose dependent rect. 11 1
53 620.29 wind 5.0 720 > th dose independent rect. 21 1
65 621.76 humidity 90.0 720 > th dose dependent rect. 20 1
92 627.11 wind 7.0 720 < th dose independent rect. 17 8
95 628.53 humidity 90.0 720 > th dose dependent rect. 20 3
97 628.78 wind 3.0 720 > th dose dependent rect. 21 1
110 633.55 wind 7.0 720 > th dose independent rect. 17 8
114 634.51 radiation 1.0 1440 < th dose independent rect. 11 9
117 634.61 radiation 1.0 1440 < th dose independent rect. 11 11
119 634.63 radiation 1.0 1440 < th dose independent rect. 11 17
121 634.66 wind 7.0 720 > th dose independent rect. 17 5
131 635.01 wind 7.0 720 > th dose independent rect. 19 3
163 636.11 wind 7.0 720 > th dose independent rect. 19 6
193 636.85 wind 7.0 720 > th dose dependent rect. 19 3
227 637.75 wind 7.0 720 > th dose dependent rect. 18 7
231 637.88 wind 5.0 270 > th dose independent rect. 21 7
254 638.44 temperature 25.0 4320 < th dose dependent rect. 4 1
257 638.46 temperature 25.0 4320 < th dose dependent rect. 2 1
262 638.54 wind 5.0 270 > th dose dependent rect. 21 7
264 638.56 temperature 25.0 4320 < th dose dependent rect. 24 6
284 638.68 radiation 1.0 1440 < th dose dependent rect. 11 17
290 638.76 temperature 10.0 4320 > th dose dependent rect. 4 1
292 638.77 radiation 1.0 1440 < th dose dependent rect. 11 14
297 638.82 wind 1.0 270 < th dose independent rect. 23 1
315 639.16 temperature 10.0 4320 > th dose dependent rect. 2 4
380 639.67 temperature 20.0 4320 < th dose independent rect. 4 1
393 639.82 temperature 20.0 4320 > th dose independent rect. 4 1
449 640.37 precipitation 0.1 270 > th dose dependent rect. 2 2
473 640.48 precipitation 0.1 270 > th dose independent rect. 2 2
514 640.92 wind 7.0 720 < th dose independent rect. 17 16
518 640.95 wind 5.0 90 > th dose dependent rect. 21 9
553 641.29 wind 7.0 720 > th dose independent rect. 17 1
564 641.46 radiation 1.0 1440 < th dose independent sin 19 NA
639 642.32 temperature 25.0 4320 < th dose dependent rect. 13 18
664 642.57 temperature 25.0 4320 < th dose dependent sin 11 NA
702 642.91 radiation 1.0 1440 > th dose independent rect. 9 1
705 642.93 wind 7.0 720 < th dose independent sin 13 NA
748 643.27 radiation 1.0 1440 > th dose independent sin 19 NA
821 643.88 humidity 70.0 43200 > th dose independent rect. 8 1
823 643.90 temperature 25.0 1440 < th dose independent rect. 18 4
843 644.00 temperature 25.0 1440 < th dose independent rect. 20 1
854 644.16 wind 7.0 720 > th dose independent sin 13 NA
856 644.18 radiation 1.0 1440 < th dose dependent sin 19 NA
865 644.25 temperature 20.0 4320 < th dose independent rect. 22 3
886 644.37 temperature 20.0 4320 < th dose independent rect. 22 8
887 644.37 radiation 20.0 1440 < th dose dependent rect. 11 2
895 644.50 humidity 70.0 43200 < th dose independent rect. 8 1
955 644.76 temperature 20.0 4320 > th dose independent rect. 22 4
965 644.84 temperature 20.0 4320 > th dose independent rect. 22 8
966 644.84 wind 5.0 90 > th dose dependent rect. 21 12
982 644.95 temperature 25.0 4320 < th dose dependent rect. 22 16