Os11g0702300 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0702300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, C2H2-type domain containing protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	3.34	(0.037)	R²	:	0.414
β₁	:	--	(--)	R²_dD	:	--	R²_D	:	--
β₂	:	0.576	(0.0889)	R²_dC	:	0.0538	R²_C	:	0.0172
β₃	:	1.21	(0.105)	R²_dE	:	0.188	R²_E	:	0.232
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	0.684	(0.0804)	R²_dN8	:	0.13	R²_N8	:	0.176
σ	:	0.688
deviance	:	218.28
__

_____

C
peak time of C	:	13.8
E
wheather	:	temperature
threshold	:	27.77
memory length	:	7655
response mode	:	> th
dose dependency	:	dose dependent
G
type of G	:	no
peak or start time of G	:	--
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
222.62	0.701	3.57	-2.66	0.661	2.67	0.123	-15.4	1.08	13.9	29.5	1452	--	--
236.64	0.716	3.32	-0.187	0.627	1.11	0.68	--	0.713	13	23.16	1556	--	--
222.65	0.695	3.57	-2.67	0.66	2.66	--	-15.4	1.08	13.9	29.5	1447	--	--
218.9	0.689	3.34	0.0136	0.627	1.16	--	--	0.676	14.2	27	7628	--	--
247.77	0.733	3.56	-2.45	--	2.67	--	-15.4	0.971	--	29.2	1541	--	--
277.11	0.78	3.27	0.464	0.573	--	0.0202	--	0.999	14.1	--	--	--	--
277.11	0.78	3.27	0.464	0.573	--	--	--	0.999	14.1	--	--	--	--
237.11	0.717	3.32	0.127	--	1.15	--	--	0.73	--	31.6	7627	--	--
218.28	0.688	3.34	--	0.576	1.21	--	--	0.684	13.8	27.77	7655	--	--
296.77	0.805	3.27	0.44	--	--	--	--	0.985	--	--	--	--	--
282.8	0.787	3.28	--	0.565	--	--	--	0.947	14.1	--	--	--	--
237.57	0.718	3.33	--	--	1.17	--	--	0.71	--	31.55	7628	--	--
301.89	0.811	3.28	--	--	--	--	--	0.936	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	217.19	temperature	25	14400	> th	dose dependent	rect.	4	1
2	218.10	radiation	30	14400	> th	dose independent	rect.	16	1
17	219.22	wind	1	43200	< th	dose dependent	rect.	1	1
19	219.52	wind	3	43200	< th	dose dependent	rect.	9	1
20	219.93	wind	5	14400	> th	dose independent	rect.	11	1
21	220.09	temperature	30	1440	> th	dose dependent	rect.	14	1
23	220.29	radiation	1	1440	< th	dose dependent	rect.	18	11
24	220.57	radiation	1	1440	< th	dose dependent	rect.	18	1
25	220.63	wind	5	14400	< th	dose independent	rect.	10	2
30	221.04	radiation	1	1440	< th	dose dependent	rect.	18	6
31	221.04	radiation	1	1440	< th	dose dependent	rect.	18	8
33	221.08	radiation	1	1440	< th	dose dependent	rect.	18	3
41	221.81	radiation	1	14400	< th	dose dependent	rect.	4	1
51	222.42	temperature	30	1440	> th	dose dependent	rect.	10	6
53	222.45	radiation	30	14400	> th	dose dependent	rect.	16	1
69	222.50	temperature	30	1440	> th	dose dependent	rect.	14	21
108	222.84	wind	1	43200	> th	dose dependent	rect.	9	1
114	222.95	wind	5	43200	< th	dose dependent	rect.	21	1
164	223.07	temperature	30	1440	> th	dose dependent	sin	21	NA
173	223.18	temperature	25	1440	> th	dose dependent	rect.	19	1
217	223.23	wind	3	43200	> th	dose independent	rect.	21	1
221	223.24	temperature	25	1440	> th	dose dependent	rect.	16	4
223	223.26	temperature	30	1440	> th	dose dependent	no	NA	NA
335	223.38	radiation	40	14400	> th	dose independent	rect.	15	17
341	223.42	wind	5	14400	> th	dose independent	rect.	8	5
397	223.70	wind	3	43200	< th	dose independent	rect.	21	1
400	223.76	wind	5	14400	> th	dose independent	rect.	4	10
401	223.76	temperature	30	1440	< th	dose independent	rect.	14	21
402	223.78	wind	5	43200	> th	dose independent	rect.	2	15
406	223.86	temperature	30	1440	> th	dose independent	rect.	14	21
407	223.88	wind	5	14400	< th	dose independent	rect.	8	5
411	223.92	wind	5	43200	< th	dose independent	rect.	2	15
418	224.09	radiation	10	14400	> th	dose independent	rect.	5	1
446	224.26	wind	5	14400	< th	dose independent	rect.	4	10
467	224.49	radiation	1	14400	< th	dose dependent	rect.	18	1
470	224.56	wind	5	43200	> th	dose dependent	rect.	5	11
472	224.57	radiation	1	14400	< th	dose dependent	rect.	18	5
473	224.57	radiation	1	14400	< th	dose dependent	rect.	18	11
477	224.60	wind	5	43200	> th	dose dependent	rect.	9	7
478	224.62	wind	1	43200	> th	dose dependent	rect.	20	2
490	224.70	wind	5	43200	> th	dose dependent	rect.	10	5
500	224.77	temperature	30	1440	< th	dose independent	rect.	14	23
504	224.83	atmosphere	1000	43200	< th	dose independent	rect.	14	1
526	224.95	wind	3	43200	< th	dose independent	rect.	8	2
528	224.96	atmosphere	1000	43200	> th	dose independent	rect.	14	1
537	225.04	temperature	30	1440	< th	dose independent	rect.	14	5
540	225.05	temperature	30	1440	< th	dose independent	rect.	14	16
542	225.07	temperature	30	1440	> th	dose independent	rect.	14	5
558	225.09	temperature	30	1440	< th	dose independent	rect.	14	10
560	225.10	temperature	30	1440	< th	dose independent	rect.	14	14
564	225.14	temperature	30	1440	< th	dose independent	rect.	14	12
576	225.21	wind	1	43200	< th	dose dependent	rect.	24	4
603	225.37	temperature	30	1440	< th	dose independent	rect.	12	23
607	225.44	wind	5	43200	< th	dose independent	rect.	20	21
622	225.58	radiation	1	1440	< th	dose independent	rect.	18	1
626	225.62	atmosphere	1000	43200	< th	dose independent	rect.	4	1
647	225.79	wind	5	43200	> th	dose independent	rect.	20	21
654	225.86	temperature	30	1440	< th	dose independent	rect.	14	1
673	226.07	radiation	1	1440	< th	dose independent	rect.	18	11
679	226.12	radiation	1	1440	< th	dose independent	rect.	18	3
681	226.13	radiation	1	1440	< th	dose independent	rect.	18	6
683	226.17	radiation	1	1440	> th	dose independent	rect.	18	1
696	226.18	temperature	30	1440	< th	dose independent	rect.	12	7
698	226.18	temperature	30	1440	< th	dose independent	rect.	12	18
703	226.19	temperature	30	1440	< th	dose independent	rect.	18	22
710	226.21	temperature	30	1440	< th	dose independent	rect.	12	12
711	226.21	temperature	30	1440	< th	dose independent	rect.	12	16
715	226.25	temperature	30	1440	< th	dose independent	rect.	12	14
726	226.30	temperature	30	1440	< th	dose independent	rect.	9	10
727	226.30	temperature	30	1440	< th	dose independent	rect.	9	21
730	226.31	radiation	40	1440	> th	dose dependent	rect.	13	1
736	226.33	temperature	30	1440	< th	dose independent	rect.	9	15
738	226.33	temperature	30	1440	< th	dose independent	rect.	9	19
740	226.34	temperature	30	1440	< th	dose independent	sin	17	NA
742	226.34	atmosphere	1000	43200	> th	dose independent	rect.	4	1
748	226.36	temperature	30	1440	< th	dose independent	rect.	9	13
750	226.36	temperature	30	1440	< th	dose independent	rect.	9	17
751	226.36	wind	3	43200	> th	dose dependent	rect.	20	20
775	226.45	temperature	30	1440	< th	dose independent	rect.	3	16
776	226.45	temperature	30	1440	< th	dose independent	rect.	21	22
781	226.46	temperature	30	1440	< th	dose independent	rect.	1	18
787	226.47	temperature	30	1440	< th	dose independent	rect.	23	20
788	226.47	temperature	30	1440	< th	dose independent	rect.	3	21
790	226.48	temperature	30	1440	> th	dose independent	rect.	14	1
793	226.48	temperature	30	1440	< th	dose independent	rect.	1	23
797	226.49	temperature	30	1440	< th	dose independent	rect.	5	14
813	226.51	temperature	30	1440	< th	dose independent	rect.	3	19
814	226.51	temperature	30	1440	< th	dose independent	rect.	5	19
824	226.52	temperature	30	1440	< th	dose independent	rect.	5	23
827	226.53	temperature	30	1440	< th	dose independent	no	NA	NA
890	226.58	temperature	30	1440	< th	dose independent	rect.	14	3
930	226.68	temperature	30	1440	< th	dose independent	rect.	9	8
935	226.72	temperature	30	1440	< th	dose independent	rect.	12	4
952	226.80	temperature	30	1440	> th	dose independent	rect.	12	23
970	226.87	wind	5	43200	> th	dose dependent	sin	2	NA
991	226.96	wind	5	43200	> th	dose independent	sin	2	NA