BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0702300 Os11g0702300|J100055D19
(163 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0702300 Zinc finger, C2H2-type domain containing protein 231 3e-61
Os03g0279700 Similar to ZPT2-12 83 8e-17
Os11g0702400 Zinc finger, C2H2-type domain containing protein 77 8e-15
Os05g0114400 Zinc finger, C2H2-type domain containing protein 76 1e-14
Os03g0820300 Similar to ZPT2-14 74 4e-14
Os03g0820400 Similar to ZPT2-13 73 1e-13
Os01g0838600 Zinc finger, C2H2-type domain containing protein 68 3e-12
Os05g0460900 65 3e-11
>Os11g0702300 Zinc finger, C2H2-type domain containing protein
Length = 163
Score = 231 bits (588), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 120/163 (73%), Positives = 120/163 (73%)
Query: 1 MDQQEDYTXXXXXXXXXXXXXXXXXXXAELDVQLSLSLACGSTTAMSSSGXXXXXXXXXX 60
MDQQEDYT AELDVQLSLSLACGSTTAMSSSG
Sbjct: 1 MDQQEDYTSDLQLELEEEEDDNQLSQLAELDVQLSLSLACGSTTAMSSSGDEEDAEPRRR 60
Query: 61 XXXXXXXXXXXXXXTCGRRFPSHQALGGHRTSHLRPTTNKRRPGPSKPLIHACEVCGLGF 120
TCGRRFPSHQALGGHRTSHLRPTTNKRRPGPSKPLIHACEVCGLGF
Sbjct: 61 RRDEEAAAAAFECRTCGRRFPSHQALGGHRTSHLRPTTNKRRPGPSKPLIHACEVCGLGF 120
Query: 121 QMGQALGGHMRRHRPRNIDLGHKQIVMPEIRPSSSLQLLDLFV 163
QMGQALGGHMRRHRPRNIDLGHKQIVMPEIRPSSSLQLLDLFV
Sbjct: 121 QMGQALGGHMRRHRPRNIDLGHKQIVMPEIRPSSSLQLLDLFV 163
>Os03g0279700 Similar to ZPT2-12
Length = 191
Score = 83.2 bits (204), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 44/63 (69%), Gaps = 3/63 (4%)
Query: 75 TCGRRFPSHQALGGHRTSHLRPTTNKRRPG---PSKPLIHACEVCGLGFQMGQALGGHMR 131
TC R+FPS QALGGHR SH +P P P+KP +H C +CGL F +GQALGGHMR
Sbjct: 55 TCNRQFPSFQALGGHRASHKKPRLADGDPAAEAPAKPKVHGCSICGLEFAVGQALGGHMR 114
Query: 132 RHR 134
RHR
Sbjct: 115 RHR 117
>Os11g0702400 Zinc finger, C2H2-type domain containing protein
Length = 170
Score = 76.6 bits (187), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 46/75 (61%), Gaps = 14/75 (18%)
Query: 75 TCGRRFPSHQALGGHRTSHLRPTTNK--------RRPG------PSKPLIHACEVCGLGF 120
TCGRRF + QALGGHRTSH RP RPG S P++H C++CG F
Sbjct: 49 TCGRRFSTFQALGGHRTSHKRPRVRADGLDLLLGARPGKLGAGGASTPVVHRCDMCGKVF 108
Query: 121 QMGQALGGHMRRHRP 135
GQALGGHMRRHRP
Sbjct: 109 ATGQALGGHMRRHRP 123
>Os05g0114400 Zinc finger, C2H2-type domain containing protein
Length = 198
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 49/80 (61%), Gaps = 7/80 (8%)
Query: 75 TCGRRFPSHQALGGHRTSHLRPTTNKRRP-GPSKPLIHACEVCGLGFQMGQALGGHMRRH 133
TC R FPS QALGGHR SH +P + SKP +H C +CGL F +GQALGGHMRRH
Sbjct: 55 TCNRVFPSFQALGGHRASHKKPRLDGDGDLSLSKPKLHGCSICGLEFAIGQALGGHMRRH 114
Query: 134 R------PRNIDLGHKQIVM 147
R PR I + K V+
Sbjct: 115 RAMTGGMPRAIVVDKKPDVV 134
>Os03g0820300 Similar to ZPT2-14
Length = 170
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 43/74 (58%), Gaps = 14/74 (18%)
Query: 75 TCGRRFPSHQALGGHRTSHLRPTTN--------------KRRPGPSKPLIHACEVCGLGF 120
TC R FP+ QALGGHRTSHLR +N R H C +CGLGF
Sbjct: 59 TCSRAFPTFQALGGHRTSHLRGRSNGLDLGAIGDKAIRLHRAADKEHRDKHECHICGLGF 118
Query: 121 QMGQALGGHMRRHR 134
+MGQALGGHMRRHR
Sbjct: 119 EMGQALGGHMRRHR 132
>Os03g0820400 Similar to ZPT2-13
Length = 144
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 42/72 (58%), Gaps = 15/72 (20%)
Query: 75 TCGRRFPSHQALGGHRTSHLR---------------PTTNKRRPGPSKPLIHACEVCGLG 119
TC R FPS QALGGHRTSHLR TT K + P+ H C +CG G
Sbjct: 49 TCSRAFPSFQALGGHRTSHLRGRHGLALGLAAATAKETTKKVQEKPAAAATHECHICGQG 108
Query: 120 FQMGQALGGHMR 131
F+MGQALGGHMR
Sbjct: 109 FEMGQALGGHMR 120
>Os01g0838600 Zinc finger, C2H2-type domain containing protein
Length = 217
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 47/83 (56%), Gaps = 23/83 (27%)
Query: 75 TCGRRFPSHQALGGHRTSHLRPTTNKR-----------------------RPGPSKPLIH 111
TC R+FP+ QALGGHR SH RP ++ RP P+KP +H
Sbjct: 63 TCNRQFPTFQALGGHRASHKRPRQQQQHALGGGAGADDAGLCLGRQPTPPRPQPAKPRVH 122
Query: 112 ACEVCGLGFQMGQALGGHMRRHR 134
C VCGL F +GQALGGHMRRHR
Sbjct: 123 ECPVCGLEFPIGQALGGHMRRHR 145
>Os05g0460900
Length = 174
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 41/77 (53%), Gaps = 17/77 (22%)
Query: 75 TCGRRFPSHQALGGHRTSHLR-----------------PTTNKRRPGPSKPLIHACEVCG 117
TC + F S QALGGHRT H R TN +R S H C VCG
Sbjct: 37 TCSKTFTSFQALGGHRTGHTRMAARQRQEHGAAGAAVVGATNNQRRVVSAHQWHLCAVCG 96
Query: 118 LGFQMGQALGGHMRRHR 134
+ F+MGQALGGHMRRHR
Sbjct: 97 VEFRMGQALGGHMRRHR 113
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.135 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,494,332
Number of extensions: 170435
Number of successful extensions: 631
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 619
Number of HSP's successfully gapped: 8
Length of query: 163
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 70
Effective length of database: 12,179,899
Effective search space: 852592930
Effective search space used: 852592930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 152 (63.2 bits)