Os11g0702400 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0702400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, C2H2-type domain containing protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	3.65	(0.0467)	R²	:	0.342
β₁	:	0.861	(0.171)	R²_dD	:	0.0379	R²_D	:	-0.0878
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	5.77	(0.877)	R²_dE	:	0.0625	R²_E	:	-0.0306
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	1.39	(0.0998)	R²_dN8	:	0.375	R²_N8	:	0.243
σ	:	0.874
deviance	:	352.42
__

_____

C
peak time of C	:	--
E
wheather	:	wind
threshold	:	0.4876
memory length	:	39
response mode	:	< th
dose dependency	:	dose dependent
G
type of G	:	rect.
peak or start time of G	:	3.16
open length of G	:	0.723

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
344.8	0.872	3.67	1	0.185	8.27	-1.28	31	1.38	15.6	1.111	14	3.01	0.917
346.45	0.867	3.64	0.892	0.162	6.43	-1.42	--	1.42	15.4	0.601	40	3.05	0.736
348.64	0.87	3.67	0.99	0.215	8.2	--	32.2	1.37	12.9	1.119	13	3.01	0.917
349.96	0.871	3.64	0.872	0.216	5.95	--	--	1.41	12.8	0.5659	40	3.12	0.717
351.41	0.873	3.67	0.98	--	8.31	--	34.3	1.37	--	1.087	13	3.02	0.917
380.77	0.915	3.65	0.861	0.101	--	-1.26	--	1.38	15.9	--	--	--	--
384.07	0.918	3.65	0.846	0.17	--	--	--	1.37	11.8	--	--	--	--
352.42	0.874	3.65	0.861	--	5.77	--	--	1.39	--	0.4876	39	3.16	0.723
369.79	0.896	3.67	--	0.187	5.75	--	--	1.3	12.6	0.53	40	3.07	0.773
385.89	0.918	3.65	0.841	--	--	--	--	1.37	--	--	--	--	--
402.93	0.939	3.67	--	0.16	--	--	--	1.28	11.5	--	--	--	--
371.97	0.898	3.67	--	--	5.69	--	--	1.29	--	0.4654	40	3.08	0.815
404.54	0.939	3.67	--	--	--	--	--	1.28	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	346.57	wind	1	10	< th	dose dependent	rect.	3	1
7	354.85	wind	1	30	< th	dose independent	rect.	3	1
8	355.53	humidity	60	43200	< th	dose dependent	rect.	14	1
10	357.16	radiation	40	43200	> th	dose independent	rect.	13	3
28	357.86	humidity	80	43200	< th	dose independent	rect.	19	1
60	358.39	radiation	10	43200	> th	dose independent	sin	14	NA
62	358.43	radiation	20	43200	> th	dose independent	sin	16	NA
150	359.01	humidity	80	43200	< th	dose independent	rect.	18	3
156	359.07	humidity	80	43200	> th	dose independent	rect.	19	1
164	359.23	humidity	80	43200	> th	dose independent	rect.	18	3
202	359.47	radiation	10	43200	> th	dose independent	rect.	16	1
287	360.16	radiation	10	43200	> th	dose independent	rect.	7	11
313	360.26	radiation	10	43200	> th	dose independent	no	NA	NA
396	360.43	radiation	10	43200	< th	dose dependent	rect.	7	3
477	360.72	wind	1	90	< th	dose dependent	rect.	6	22
481	360.83	wind	1	14400	< th	dose dependent	rect.	8	1
511	361.03	wind	1	14400	< th	dose independent	rect.	8	1
554	361.38	wind	1	90	< th	dose dependent	rect.	3	20
559	361.48	wind	1	14400	> th	dose independent	rect.	8	1
581	361.70	radiation	10	43200	< th	dose dependent	rect.	7	10
600	361.79	humidity	50	43200	> th	dose independent	rect.	14	3
602	361.81	humidity	70	43200	> th	dose dependent	rect.	19	1
603	361.82	wind	1	14400	< th	dose dependent	rect.	24	4
661	362.24	humidity	90	14400	< th	dose dependent	rect.	2	1
662	362.25	humidity	90	14400	< th	dose dependent	rect.	1	3
665	362.30	humidity	60	43200	< th	dose dependent	rect.	1	16
669	362.31	radiation	20	43200	< th	dose dependent	rect.	14	2
670	362.31	humidity	60	43200	< th	dose dependent	rect.	3	14
679	362.37	wind	1	43200	< th	dose dependent	rect.	12	1
727	362.60	humidity	60	43200	< th	dose dependent	rect.	11	19
751	362.65	humidity	60	43200	< th	dose dependent	rect.	11	14
861	362.76	wind	1	4320	< th	dose dependent	rect.	3	2
883	362.90	humidity	60	43200	< th	dose dependent	sin	22	NA
905	363.07	humidity	60	14400	< th	dose independent	rect.	11	1
918	363.11	radiation	10	43200	< th	dose dependent	sin	23	NA
940	363.17	wind	1	90	< th	dose dependent	rect.	3	12
943	363.18	radiation	20	43200	< th	dose dependent	rect.	9	1
992	363.24	radiation	10	43200	< th	dose dependent	rect.	24	12
993	363.24	radiation	10	43200	< th	dose dependent	rect.	21	15