Os03g0820400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to ZPT2-13.
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Os03g0820400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to ZPT2-13.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 365.19 | 0.898 | 7.15 | -3.43 | 0.202 | 0.146 | -0.592 | -12.7 | -1.44 | 12.1 | 24.64 | 2269 | -- | -- |
| 396.88 | 0.928 | 6.83 | -0.269 | 0.176 | -1.35 | -0.0532 | -- | -0.972 | 12.3 | 29.9 | 2152 | -- | -- |
| 364.67 | 0.889 | 7.15 | -3.47 | 0.242 | 0.176 | -- | -12.9 | -1.46 | 10.9 | 24.57 | 2101 | -- | -- |
| 396.86 | 0.928 | 6.84 | -0.259 | 0.167 | -1.35 | -- | -- | -0.965 | 11.8 | 29.9 | 2153 | -- | -- |
| 368.01 | 0.893 | 7.14 | -3.34 | -- | 0.0468 | -- | -12.4 | -1.42 | -- | 24.53 | 2127 | -- | -- |
| 451.54 | 0.996 | 6.79 | -0.58 | 0.298 | -- | 0.402 | -- | -0.758 | 10.4 | -- | -- | -- | -- |
| 452.02 | 0.996 | 6.78 | -0.562 | 0.298 | -- | -- | -- | -0.756 | 11.1 | -- | -- | -- | -- |
| 398.51 | 0.93 | 6.84 | -0.26 | -- | -1.36 | -- | -- | -0.976 | -- | 29.9 | 2199 | -- | -- |
| 398.57 | 0.93 | 6.83 | -- | 0.162 | -1.4 | -- | -- | -0.943 | 11.9 | 29.9 | 2153 | -- | -- |
| 457.57 | 1 | 6.79 | -0.569 | -- | -- | -- | -- | -0.758 | -- | -- | -- | -- | -- |
| 460.35 | 1 | 6.77 | -- | 0.304 | -- | -- | -- | -0.693 | 11.3 | -- | -- | -- | -- |
| 399.99 | 0.931 | 6.84 | -- | -- | -1.38 | -- | -- | -0.959 | -- | 29.92 | 3711 | -- | -- |
| 466.11 | 1.01 | 6.78 | -- | -- | -- | -- | -- | -0.695 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 327.29 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 10 | 2 |
| 2 | 336.20 | wind | 1.0 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 4 | 338.44 | wind | 1.0 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 8 | 348.70 | wind | 5.0 | 43200 | > th | dose independent | rect. | 21 | 3 |
| 10 | 350.28 | wind | 5.0 | 43200 | < th | dose independent | rect. | 21 | 3 |
| 15 | 351.95 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 21 | 3 |
| 27 | 355.14 | wind | 5.0 | 43200 | < th | dose independent | rect. | 20 | 8 |
| 39 | 357.90 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 20 | 9 |
| 45 | 359.10 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 8 | 8 |
| 46 | 359.11 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 9 | 6 |
| 50 | 359.16 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 10 | 4 |
| 51 | 359.29 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 11 | 2 |
| 61 | 359.48 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 87 | 360.25 | atmosphere | 1005.0 | 43200 | < th | dose dependent | sin | 0 | NA |
| 104 | 360.50 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 20 | 1 |
| 181 | 362.08 | wind | 5.0 | 43200 | > th | dose independent | rect. | 19 | 14 |
| 244 | 363.06 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 20 | 18 |
| 245 | 363.07 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 22 | 16 |
| 289 | 363.47 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 20 | 13 |
| 293 | 363.50 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 294 | 363.51 | wind | 5.0 | 43200 | < th | dose independent | rect. | 20 | 13 |
| 326 | 363.77 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 11 | 15 |
| 350 | 364.03 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 9 | 1 |
| 356 | 364.11 | atmosphere | 1005.0 | 43200 | < th | dose dependent | no | NA | NA |
| 358 | 364.12 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 22 | 23 |
| 368 | 364.18 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 387 | 364.34 | atmosphere | 995.0 | 43200 | < th | dose dependent | sin | 17 | NA |
| 393 | 364.43 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 404 | 364.61 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 13 | 12 |
| 440 | 365.16 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 21 | 19 |
| 460 | 365.39 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 477 | 365.58 | wind | 1.0 | 14400 | > th | dose independent | rect. | 8 | 4 |
| 484 | 365.60 | radiation | 40.0 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 526 | 366.27 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 16 | 20 |
| 527 | 366.28 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 6 |
| 531 | 366.30 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 534 | 366.34 | wind | 5.0 | 43200 | > th | dose independent | sin | 10 | NA |
| 535 | 366.35 | wind | 1.0 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 545 | 366.53 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 18 | 21 |
| 547 | 366.56 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 552 | 366.60 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 20 | 20 |
| 567 | 366.76 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 16 | 2 |
| 607 | 367.24 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 22 | 17 |
| 616 | 367.39 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 17 | 3 |
| 633 | 367.53 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 647 | 367.60 | wind | 9.0 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 657 | 367.70 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 678 | 367.87 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 679 | 367.87 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 684 | 367.91 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 693 | 367.97 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 15 | 5 |
| 711 | 368.13 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 723 | 368.23 | wind | 5.0 | 43200 | < th | dose independent | sin | 10 | NA |
| 724 | 368.23 | wind | 9.0 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 732 | 368.27 | radiation | 40.0 | 4320 | > th | dose independent | rect. | 13 | 19 |
| 740 | 368.33 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 18 | 5 |
| 745 | 368.36 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 752 | 368.40 | radiation | 40.0 | 4320 | > th | dose independent | rect. | 13 | 3 |
| 770 | 368.43 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 6 |
| 773 | 368.43 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 6 |
| 788 | 368.54 | radiation | 40.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 798 | 368.60 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 15 | 5 |
| 801 | 368.61 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 18 | 4 |
| 811 | 368.68 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 6 |
| 832 | 368.85 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 838 | 368.88 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 8 | 8 |
| 869 | 369.09 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 10 | 3 |
| 890 | 369.21 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 2 | 13 |
| 897 | 369.27 | atmosphere | 995.0 | 43200 | > th | dose independent | sin | 5 | NA |
| 916 | 369.40 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 16 | 15 |
| 918 | 369.41 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 10 | 1 |
| 927 | 369.50 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 981 | 369.87 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 17 | 5 |
| 984 | 369.87 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 988 | 369.93 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 990 | 369.93 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 2 |