BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0820400 Os03g0820400|AK119690
         (144 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0820400  Similar to ZPT2-13                                  149   5e-37
Os03g0820300  Similar to ZPT2-14                                   79   8e-16
Os11g0702300  Zinc finger, C2H2-type domain containing protein     67   4e-12
Os03g0279700  Similar to ZPT2-12                                   66   7e-12
Os05g0114400  Zinc finger, C2H2-type domain containing protein     63   8e-11

>Os03g0820400 Similar to ZPT2-13
          Length = 144

 Score =  149 bits (377), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 84/144 (58%), Positives = 84/144 (58%)

Query: 1   MTKHPRDGEVIXXXXXXXXXXXXXXGERKKXXXXXXXXXXXXXDFVCKTCSRAFPSFQAL 60
           MTKHPRDGEVI              GERKK             DFVCKTCSRAFPSFQAL
Sbjct: 1   MTKHPRDGEVISLSLSLTLGAAADSGERKKPRRGSSPAASGSGDFVCKTCSRAFPSFQAL 60

Query: 61  GGHRTSXXXXXXXXXXXXXXXTAKETTKKVQEKPAAAATHECHICGQGFEMGQALGGHMR 120
           GGHRTS               TAKETTKKVQEKPAAAATHECHICGQGFEMGQALGGHMR
Sbjct: 61  GGHRTSHLRGRHGLALGLAAATAKETTKKVQEKPAAAATHECHICGQGFEMGQALGGHMR 120

Query: 121 XXXXXXXXXXXXXXXXXXLLELFV 144
                             LLELFV
Sbjct: 121 RHREEAAAAAAAVHAPPVLLELFV 144



>Os03g0820300 Similar to ZPT2-14
          Length = 170

 Score = 79.3 bits (194), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 42/77 (54%), Positives = 46/77 (59%), Gaps = 1/77 (1%)

Query: 44  DFVCKTCSRAFPSFQALGGHRTSXXXXXXXXXXXXXXXTAKETTKKVQEKPAAAATHECH 103
           +FVCKTCSRAFP+FQALGGHRTS                      +  +K      HECH
Sbjct: 54  EFVCKTCSRAFPTFQALGGHRTSHLRGRSNGLDLGAIGDKAIRLHRAADKE-HRDKHECH 112

Query: 104 ICGQGFEMGQALGGHMR 120
           ICG GFEMGQALGGHMR
Sbjct: 113 ICGLGFEMGQALGGHMR 129



>Os11g0702300 Zinc finger, C2H2-type domain containing protein
          Length = 163

 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 40/72 (55%), Gaps = 15/72 (20%)

Query: 49  TCSRAFPSFQALGGHRTSXXXXXXXXXXXXXXXTAKETTKKVQEKPAAAATHECHICGQG 108
           TC R FPS QALGGHRTS                 + TT K +  P+    H C +CG G
Sbjct: 75  TCGRRFPSHQALGGHRTSH---------------LRPTTNKRRPGPSKPLIHACEVCGLG 119

Query: 109 FEMGQALGGHMR 120
           F+MGQALGGHMR
Sbjct: 120 FQMGQALGGHMR 131



>Os03g0279700 Similar to ZPT2-12
          Length = 191

 Score = 66.2 bits (160), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 36/76 (47%), Positives = 38/76 (50%), Gaps = 12/76 (15%)

Query: 45  FVCKTCSRAFPSFQALGGHRTSXXXXXXXXXXXXXXXTAKETTKKVQEKPAAAATHECHI 104
           F CKTC+R FPSFQALGGHR S                         E PA    H C I
Sbjct: 51  FECKTCNRQFPSFQALGGHRASHKKPRLA------------DGDPAAEAPAKPKVHGCSI 98

Query: 105 CGQGFEMGQALGGHMR 120
           CG  F +GQALGGHMR
Sbjct: 99  CGLEFAVGQALGGHMR 114



>Os05g0114400 Zinc finger, C2H2-type domain containing protein
          Length = 198

 Score = 62.8 bits (151), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 37/76 (48%), Gaps = 14/76 (18%)

Query: 45  FVCKTCSRAFPSFQALGGHRTSXXXXXXXXXXXXXXXTAKETTKKVQEKPAAAATHECHI 104
           FVCKTC+R FPSFQALGGHR S                 K               H C I
Sbjct: 51  FVCKTCNRVFPSFQALGGHRASHKKPRLDGDGDLSLSKPK--------------LHGCSI 96

Query: 105 CGQGFEMGQALGGHMR 120
           CG  F +GQALGGHMR
Sbjct: 97  CGLEFAIGQALGGHMR 112



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.134    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,969,869
Number of extensions: 62958
Number of successful extensions: 391
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 391
Number of HSP's successfully gapped: 6
Length of query: 144
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 53
Effective length of database: 12,284,327
Effective search space: 651069331
Effective search space used: 651069331
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 151 (62.8 bits)