BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0156000 Os11g0156000|AK070487
(279 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0156000 Similar to AP2 domain containing protein RAP2.... 428 e-120
Os02g0683500 Similar to DNA-binding protein RAV1 167 7e-42
Os03g0120900 Similar to AP2 domain containing protein RAP2.... 166 2e-41
Os04g0581400 Transcriptional factor B3 family protein 162 2e-40
Os12g0157000 Conserved hypothetical protein 158 5e-39
Os10g0537100 154 6e-38
Os01g0693400 Transcriptional factor B3 family protein 150 1e-36
Os01g0140700 140 1e-33
Os08g0157700 139 3e-33
Os05g0549800 Transcriptional factor B3 family protein 137 7e-33
Os01g0141000 Similar to RAV-like protein 135 3e-32
Os07g0273700 Transcriptional factor B3 family protein 111 6e-25
Os07g0679700 Transcriptional factor B3 family protein 68 8e-12
>Os11g0156000 Similar to AP2 domain containing protein RAP2.8 (Fragment)
Length = 279
Score = 428 bits (1100), Expect = e-120, Method: Compositional matrix adjust.
Identities = 225/279 (80%), Positives = 225/279 (80%)
Query: 1 MAMNHPLFSQEQPQSWPWGVAMYANFHYHHHYEKEHMFEKPLTPSDVGKLNRLVIPKQHA 60
MAMNHPLFSQEQPQSWPWGVAMYANFHYHHHYEKEHMFEKPLTPSDVGKLNRLVIPKQHA
Sbjct: 1 MAMNHPLFSQEQPQSWPWGVAMYANFHYHHHYEKEHMFEKPLTPSDVGKLNRLVIPKQHA 60
Query: 61 ERYFPLGAGDAADKGLILSFEDEAGAPWRFRYSYWTSSQSYVLTKGWSRYVKEKRLDAGD 120
ERYFPLGAGDAADKGLILSFEDEAGAPWRFRYSYWTSSQSYVLTKGWSRYVKEKRLDAGD
Sbjct: 61 ERYFPLGAGDAADKGLILSFEDEAGAPWRFRYSYWTSSQSYVLTKGWSRYVKEKRLDAGD 120
Query: 121 VVHFERVRGSFGVGDRLFIGCRRRGDXXXXXXXXXXXXXXXXXXXXXXGEQQPWSPMCXX 180
VVHFERVRGSFGVGDRLFIGCRRRGD GEQQPWSPMC
Sbjct: 121 VVHFERVRGSFGVGDRLFIGCRRRGDAAAAQTPAPPPAVRVAPAAQNAGEQQPWSPMCYS 180
Query: 181 XXXXXXXXXXXANSYAYRRXXXXXXXXXXXXXESPRDTDSPSFSAGSAPSRRLRLFGVNL 240
ANSYAYRR ESPRDTDSPSFSAGSAPSRRLRLFGVNL
Sbjct: 181 TSGGGSYPTSPANSYAYRRAADHDHGDMHHADESPRDTDSPSFSAGSAPSRRLRLFGVNL 240
Query: 241 DCGPEPEADXXXXXXMYGYMHQQSSYAAMSAVPSYWGNS 279
DCGPEPEAD MYGYMHQQSSYAAMSAVPSYWGNS
Sbjct: 241 DCGPEPEADTTAAATMYGYMHQQSSYAAMSAVPSYWGNS 279
>Os02g0683500 Similar to DNA-binding protein RAV1
Length = 412
Score = 167 bits (423), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 82/114 (71%), Positives = 92/114 (80%), Gaps = 1/114 (0%)
Query: 33 EKEHMFEKPLTPSDVGKLNRLVIPKQHAERYFPLGAGDAADKGLILSFEDEAGAPWRFRY 92
EKEHMF+K +TPSDVGKLNRLVIPKQ+AE+YFPL A A +KGL+L+FED AG PWRFRY
Sbjct: 91 EKEHMFDKVVTPSDVGKLNRLVIPKQYAEKYFPLDAA-ANEKGLLLNFEDRAGKPWRFRY 149
Query: 93 SYWTSSQSYVLTKGWSRYVKEKRLDAGDVVHFERVRGSFGVGDRLFIGCRRRGD 146
SYW SSQSYV+TKGWSR+VKEKRLDAGD V F R G RLFI +RR D
Sbjct: 150 SYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFSRGIGDEAARHRLFIDWKRRAD 203
>Os03g0120900 Similar to AP2 domain containing protein RAP2.8 (Fragment)
Length = 311
Score = 166 bits (419), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 84/114 (73%), Positives = 92/114 (80%), Gaps = 2/114 (1%)
Query: 33 EKEHMFEKPLTPSDVGKLNRLVIPKQHAERYFPLGAGDAADKGLILSFEDEAGAPWRFRY 92
EKEHMF+K +TPSDVGKLNRLVIPKQHAE+YFPL A + +KGL+LSFED G PWRFRY
Sbjct: 32 EKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDAA-SNEKGLLLSFEDRTGKPWRFRY 90
Query: 93 SYWTSSQSYVLTKGWSRYVKEKRLDAGDVVHFERVRGSFGVGDRLFIGCRRRGD 146
SYW SSQSYV+TKGWSR+VKEKRLDAGD V F R G G RLFI RRR D
Sbjct: 91 SYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFGRGVGEAARG-RLFIDWRRRPD 143
>Os04g0581400 Transcriptional factor B3 family protein
Length = 316
Score = 162 bits (411), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 81/114 (71%), Positives = 91/114 (79%), Gaps = 2/114 (1%)
Query: 33 EKEHMFEKPLTPSDVGKLNRLVIPKQHAERYFPLGAGDAADKGLILSFEDEAGAPWRFRY 92
EKEHMF+K +TPSDVGKLNRLVIPKQHAE+YFPL + A +KGL+LSFED G WRFRY
Sbjct: 105 EKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSA-ANEKGLLLSFEDRTGKLWRFRY 163
Query: 93 SYWTSSQSYVLTKGWSRYVKEKRLDAGDVVHFERVRGSFGVGDRLFIGCRRRGD 146
SYW SSQSYV+TKGWSR+VKEKRLDAGD V F R + DRLFI +RR D
Sbjct: 164 SYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFCRG-AAEATRDRLFIDWKRRAD 216
>Os12g0157000 Conserved hypothetical protein
Length = 210
Score = 158 bits (399), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 93/172 (54%), Positives = 101/172 (58%), Gaps = 7/172 (4%)
Query: 109 RYVKEKRLDAGDVVHFERVRGSFGVGDRLFIGCRRRGDXXXXXXXXXXXXXXXXXXXXXX 168
RYVKEKRLDAGDVVHFERVRG G DRLFIGCRRRG+
Sbjct: 44 RYVKEKRLDAGDVVHFERVRG-LGAADRLFIGCRRRGESAPAPPPAVRVTPQPPALNG-- 100
Query: 169 GEQQPWSPMCXXXXXXXXXXXXXANSYAYRRXXXXXXXXXXXXXESPRDTDSP--SFSAG 226
GEQQPWSPMC ANSYAY R ES R+ D+ S ++
Sbjct: 101 GEQQPWSPMCYSTSGSSYDPTSPANSYAYHRSVDQDHSDILHAGESQREADAKSSSAASA 160
Query: 227 SAPSRRLRLFGVNLDCGPEPEADXXXXXXMYGYMHQQSSYAAMSAVPSYWGN 278
PSRRLRLFGVNLDCGPEPEAD MYGYMH QS YAA+S VP+YWG+
Sbjct: 161 PPPSRRLRLFGVNLDCGPEPEAD--QATAMYGYMHHQSPYAAVSTVPNYWGS 210
>Os10g0537100
Length = 312
Score = 154 bits (390), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 84/125 (67%), Positives = 88/125 (70%), Gaps = 13/125 (10%)
Query: 32 YEKEHMFEKPLTPSDVGKLNRLVIPKQHAERYFPL------------GAGDAADKGLILS 79
EKEHMFEK +TPSDVGKLNRLVIPKQHAERYFPL G G KGL+LS
Sbjct: 29 VEKEHMFEKVVTPSDVGKLNRLVIPKQHAERYFPLDAAAGAGGGGGGGGGGGGGKGLVLS 88
Query: 80 FEDEAGAPWRFRYSYWTSSQSYVLTKGWSRYVKEKRLDAGDVVHFERVRGSFGVGDRLFI 139
FED G WRFRYSYW SSQSYV+TKGWSR+VKEKRL AGD V F R G G RLFI
Sbjct: 89 FEDRTGKAWRFRYSYWNSSQSYVMTKGWSRFVKEKRLGAGDTVSFGRGLGDAARG-RLFI 147
Query: 140 GCRRR 144
RRR
Sbjct: 148 DFRRR 152
>Os01g0693400 Transcriptional factor B3 family protein
Length = 393
Score = 150 bits (378), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/111 (65%), Positives = 86/111 (77%), Gaps = 2/111 (1%)
Query: 34 KEHMFEKPLTPSDVGKLNRLVIPKQHAERYFPLGAGDAA--DKGLILSFEDEAGAPWRFR 91
++H+F+K +TPSDVGKLNRLVIPKQHAE++FPL A KG++L+FED AG WRFR
Sbjct: 212 RDHLFDKTVTPSDVGKLNRLVIPKQHAEKHFPLQLPSAGGESKGVLLNFEDAAGKVWRFR 271
Query: 92 YSYWTSSQSYVLTKGWSRYVKEKRLDAGDVVHFERVRGSFGVGDRLFIGCR 142
YSYW SSQSYVLTKGWSR+VKEK L AGDVV F R S G +LFI C+
Sbjct: 272 YSYWNSSQSYVLTKGWSRFVKEKGLHAGDVVGFYRSAASAGDDGKLFIDCK 322
>Os01g0140700
Length = 317
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/116 (58%), Positives = 84/116 (72%), Gaps = 4/116 (3%)
Query: 32 YEKEHMFEKPLTPSDVGKLNRLVIPKQHAERYFPL----GAGDAADKGLILSFEDEAGAP 87
+ +E +FEK +TPSDVGKLNRLV+PKQ AER+FP + DAA KG++L+FED G
Sbjct: 172 WAREPLFEKAVTPSDVGKLNRLVVPKQQAERHFPFPLRRHSSDAAGKGVLLNFEDGDGKV 231
Query: 88 WRFRYSYWTSSQSYVLTKGWSRYVKEKRLDAGDVVHFERVRGSFGVGDRLFIGCRR 143
WRFRYSYW SSQSYVLTKGWSR+V+EK L GD V F R ++G L I C++
Sbjct: 232 WRFRYSYWNSSQSYVLTKGWSRFVREKGLRPGDTVAFSRSAAAWGTEKHLLIDCKK 287
>Os08g0157700
Length = 287
Score = 139 bits (349), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 66/94 (70%), Positives = 74/94 (78%), Gaps = 5/94 (5%)
Query: 33 EKEHMFEKPLTPSDVGKLNRLVIPKQHAERYFPLGAGDAADKGLILSFEDEAGAPWRFRY 92
E+EHMF+K +TPSDVGKLNRLV+PKQHAER+FP AA G L FED AG PWRFRY
Sbjct: 66 EREHMFDKVVTPSDVGKLNRLVVPKQHAERFFP-----AAAAGTQLCFEDRAGTPWRFRY 120
Query: 93 SYWTSSQSYVLTKGWSRYVKEKRLDAGDVVHFER 126
SYW SSQSYV+TKGWSR+V+ RL AGD V F R
Sbjct: 121 SYWGSSQSYVMTKGWSRFVRAARLSAGDTVSFSR 154
>Os05g0549800 Transcriptional factor B3 family protein
Length = 394
Score = 137 bits (346), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 73/128 (57%), Positives = 86/128 (67%), Gaps = 20/128 (15%)
Query: 34 KEHMFEKPLTPSDVGKLNRLVIPKQHAERYFPL-----------------GAGDAADKGL 76
+EH+F+K +TPSDVGKLNRLVIPKQHAE++FPL AG KG+
Sbjct: 189 REHLFDKTVTPSDVGKLNRLVIPKQHAEKHFPLQLPPPTTTSSVAAAADAAAGGGDCKGV 248
Query: 77 ILSFEDEAGAPWRFRYSYWTSSQSYVLTKGWSRYVKEKRLDAGDVVHFERVRGSFGVGDR 136
+L+FED AG W+FRYSYW SSQSYVLTKGWSR+VKEK L AGD V F R G +
Sbjct: 249 LLNFEDAAGKVWKFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDAVGFYRAAGK---NAQ 305
Query: 137 LFIGCRRR 144
LFI C+ R
Sbjct: 306 LFIDCKVR 313
>Os01g0141000 Similar to RAV-like protein
Length = 365
Score = 135 bits (340), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 73/144 (50%), Positives = 93/144 (64%), Gaps = 10/144 (6%)
Query: 8 FSQEQPQSWPWGVAMYANFHYHHHYEKEHMFEKPLTPSDVGKLNRLVIPKQHAERYFPL- 66
++ E Q G M A + +E +FEK +TPSDVGKLNRLV+PKQHAE++FPL
Sbjct: 152 YADELRQGLRRGRGMGARAQPTPSWAREPLFEKAVTPSDVGKLNRLVVPKQHAEKHFPLR 211
Query: 67 -------GAGDAADKGLILSFEDEAGAPWRFRYSYWTSSQSYVLTKGWSRYVKEKRLDAG 119
+ A KG++L+FED G WRFRYSYW SSQSYVLTKGWSR+V+EK L AG
Sbjct: 212 RAASSDSASAAATGKGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRAG 271
Query: 120 DVVHFERVRGSFGVGDRLFIGCRR 143
D + F R ++G LFI C++
Sbjct: 272 DTIVFS--RSAYGPDKLLFIDCKK 293
>Os07g0273700 Transcriptional factor B3 family protein
Length = 1450
Score = 111 bits (277), Expect = 6e-25, Method: Composition-based stats.
Identities = 58/112 (51%), Positives = 71/112 (63%), Gaps = 7/112 (6%)
Query: 33 EKEHMFEKPLTPSDVGKLNRLVIPKQHAERYFPLGAGDAADKGLILSFEDEAGAPWRFRY 92
EKEH+F+K +TPSDVG L RLVIP QHAE YFP +G++L FED+AG WRF Y
Sbjct: 69 EKEHIFDKVVTPSDVGNLGRLVIPWQHAECYFPRDVPANEREGVVLRFEDDAGNSWRFLY 128
Query: 93 SYWTSSQSYVLTKGWSRYVKEKRLDAGDVVHFERVRGSFGVGDRLFIGCRRR 144
+ LT GWS + ++ RLDAGD+V F R S DRLFI +RR
Sbjct: 129 ------RGSSLTLGWSHFFRKNRLDAGDMVSFYR-GASEATRDRLFIHSKRR 173
>Os07g0679700 Transcriptional factor B3 family protein
Length = 949
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 63/109 (57%), Gaps = 10/109 (9%)
Query: 37 MFEKPLTPSDVGKLNRLVIPKQHAERYFPLGAGDAADKGLILSFEDEAGAPWRFRYSYW- 95
+FEK L+ SD G++ RLV+PK AE YFP + +G L+ +D G W F++ +W
Sbjct: 362 LFEKVLSASDAGRIGRLVLPKACAEAYFP---PISQPEGRPLTIQDAKGKEWHFQFRFWP 418
Query: 96 -TSSQSYVLTKGWSRYVKEKRLDAGDVVHFERVRGSFGVGDRLFIGCRR 143
+S+ YVL +G + ++ +L AGD V F R+ G +L +G R+
Sbjct: 419 NNNSRMYVL-EGVTPCIQSLQLQAGDTVTFSRIEP----GGKLVMGFRK 462
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.135 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,570,580
Number of extensions: 330556
Number of successful extensions: 795
Number of sequences better than 1.0e-10: 14
Number of HSP's gapped: 806
Number of HSP's successfully gapped: 14
Length of query: 279
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 179
Effective length of database: 11,814,401
Effective search space: 2114777779
Effective search space used: 2114777779
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)