Os07g0679700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Transcriptional factor B3 family protein.
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Os07g0679700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Transcriptional factor B3 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 65.38 | 0.38 | 11.9 | 0.342 | 1.82 | -0.819 | 0.613 | -0.244 | 0.4 | 5.13 | 18.33 | 10 | -- | -- |
| 65.03 | 0.378 | 11.9 | 0.339 | 1.79 | -0.775 | 0.613 | -- | 0.41 | 5.26 | 18.12 | 10 | -- | -- |
| 65.75 | 0.381 | 11.9 | 0.337 | 1.8 | -0.798 | -- | -0.173 | 0.404 | 5.16 | 16.76 | 10 | -- | -- |
| 65.91 | 0.381 | 11.9 | 0.342 | 1.79 | -0.8 | -- | -- | 0.404 | 5.15 | 16.76 | 10 | -- | -- |
| 224.62 | 0.702 | 11.9 | 0.425 | -- | -0.561 | -- | -0.135 | 0.438 | -- | 7.59 | 8 | -- | -- |
| 77.03 | 0.411 | 11.9 | 0.36 | 1.84 | -- | 0.768 | -- | 0.416 | 6.94 | -- | -- | -- | -- |
| 78.55 | 0.415 | 11.9 | 0.373 | 1.84 | -- | -- | -- | 0.414 | 6.92 | -- | -- | -- | -- |
| 224.57 | 0.701 | 11.9 | 0.423 | -- | -0.559 | -- | -- | 0.435 | -- | 6.78 | 4 | -- | -- |
| 68.96 | 0.389 | 11.9 | -- | 1.81 | -0.816 | -- | -- | 0.367 | 5.12 | 17.34 | 2 | -- | -- |
| 256.61 | 0.749 | 11.9 | 0.412 | -- | -- | -- | -- | 0.449 | -- | -- | -- | -- | -- |
| 82.22 | 0.424 | 11.9 | -- | 1.85 | -- | -- | -- | 0.372 | 6.9 | -- | -- | -- | -- |
| 229.29 | 0.708 | 11.9 | -- | -- | -0.557 | -- | -- | 0.388 | -- | 6.78 | 2 | -- | -- |
| 261.09 | 0.754 | 11.9 | -- | -- | -- | -- | -- | 0.403 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.88 | radiation | 10 | 90 | < th | dose dependent | rect. | 9 | 8 |
| 2 | 61.22 | radiation | 10 | 90 | < th | dose dependent | rect. | 7 | 10 |
| 5 | 62.81 | radiation | 10 | 90 | < th | dose dependent | rect. | 11 | 6 |
| 6 | 62.98 | radiation | 10 | 10 | < th | dose dependent | rect. | 6 | 12 |
| 16 | 64.02 | radiation | 20 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 17 | 64.06 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 23 | 64.27 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 6 | 3 |
| 44 | 64.55 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 6 | 3 |
| 49 | 64.58 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 6 | 3 |
| 57 | 64.61 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 103 | 64.90 | radiation | 20 | 10 | < th | dose dependent | rect. | 23 | 21 |
| 130 | 65.09 | radiation | 20 | 90 | < th | dose dependent | rect. | 23 | 19 |
| 181 | 65.48 | radiation | 20 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 188 | 65.51 | radiation | 20 | 10 | < th | dose dependent | no | NA | NA |
| 189 | 65.51 | radiation | 30 | 4320 | < th | dose dependent | rect. | 21 | 8 |
| 191 | 65.52 | radiation | 20 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 193 | 65.53 | radiation | 20 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 211 | 65.62 | radiation | 20 | 10 | < th | dose dependent | rect. | 6 | 23 |
| 216 | 65.68 | radiation | 1 | 90 | < th | dose independent | rect. | 7 | 10 |
| 241 | 65.80 | radiation | 30 | 4320 | < th | dose dependent | rect. | 19 | 10 |
| 242 | 65.80 | radiation | 20 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 267 | 65.94 | radiation | 10 | 10 | < th | dose dependent | sin | 0 | NA |
| 276 | 65.97 | radiation | 20 | 10 | < th | dose dependent | rect. | 23 | 19 |
| 284 | 66.01 | radiation | 20 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 287 | 66.03 | atmosphere | 1015 | 4320 | > th | dose independent | sin | 6 | NA |
| 303 | 66.08 | atmosphere | 1015 | 4320 | < th | dose independent | sin | 6 | NA |
| 353 | 66.29 | radiation | 20 | 90 | < th | dose dependent | sin | 1 | NA |
| 359 | 66.31 | humidity | 80 | 1440 | < th | dose independent | rect. | 2 | 11 |
| 369 | 66.33 | radiation | 20 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 370 | 66.34 | radiation | 10 | 90 | > th | dose independent | sin | 1 | NA |
| 372 | 66.34 | radiation | 10 | 90 | > th | dose independent | rect. | 17 | 23 |
| 378 | 66.35 | humidity | 60 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 381 | 66.36 | humidity | 60 | 14400 | > th | dose independent | rect. | 21 | 3 |
| 388 | 66.37 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 389 | 66.37 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 7 |
| 395 | 66.38 | radiation | 1 | 720 | < th | dose independent | rect. | 9 | 3 |
| 397 | 66.38 | radiation | 1 | 720 | < th | dose dependent | rect. | 9 | 3 |
| 410 | 66.41 | radiation | 10 | 10 | > th | dose independent | rect. | 9 | 23 |
| 440 | 66.50 | radiation | 20 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 460 | 66.56 | atmosphere | 1015 | 4320 | > th | dose dependent | sin | 5 | NA |
| 484 | 66.63 | radiation | 1 | 10 | < th | dose dependent | rect. | 11 | 5 |
| 516 | 66.74 | radiation | 10 | 90 | > th | dose independent | rect. | 6 | 10 |
| 542 | 66.77 | radiation | 1 | 10 | < th | dose independent | rect. | 7 | 9 |
| 586 | 66.88 | radiation | 10 | 10 | > th | dose independent | rect. | 7 | 11 |
| 603 | 66.89 | radiation | 10 | 10 | > th | dose independent | no | NA | NA |
| 604 | 66.89 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 690 | 66.92 | radiation | 10 | 10 | > th | dose independent | sin | 23 | NA |
| 695 | 66.94 | radiation | 1 | 10 | < th | dose independent | rect. | 7 | 11 |
| 699 | 66.95 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 703 | 66.95 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 717 | 66.99 | radiation | 10 | 10 | < th | dose independent | rect. | 6 | 23 |
| 719 | 67.00 | temperature | 25 | 10 | < th | dose independent | rect. | 13 | 7 |
| 784 | 67.12 | radiation | 20 | 10 | < th | dose dependent | rect. | 6 | 14 |
| 803 | 67.16 | humidity | 80 | 1440 | > th | dose independent | rect. | 2 | 12 |
| 815 | 67.20 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 20 |
| 839 | 67.22 | radiation | 10 | 90 | < th | dose independent | rect. | 23 | 19 |
| 850 | 67.25 | radiation | 10 | 90 | > th | dose independent | rect. | 9 | 23 |
| 880 | 67.28 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 8 |
| 912 | 67.34 | radiation | 10 | 10 | < th | dose independent | rect. | 23 | 21 |
| 973 | 67.43 | radiation | 10 | 90 | > th | dose independent | no | NA | NA |