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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0156000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to AP2 domain containing protein RAP2.8 (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.37 (0.0447) R2 : 0.331
β1 : -1.35 (0.164) R2dD : 0.104 R2D : 0.0735
β2 : 0.931 (0.124) R2dC : 0.0939 R2C : 0.153
β3 : 1.95 (0.261) R2dE : 0.0951 R2E : 0.141
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.107 (0.096) R2dN8 : 0.00256 R2N8 : -0.00106
σ : 0.835
deviance : 321.25
__
_____
C
peak time of C : 6.25
E
wheather : wind
threshold : 1.509
memory length : 76
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 4.1
open length of G : 1.29

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
317.72 0.837 4.41 -1.61 0.947 2.68 -0.521 -7.18 -0.112 6.31 1.047 83 4.03 1.15
320.83 0.834 4.37 -1.33 0.917 1.88 -0.859 -- -0.0775 6.29 1.437 83 4.09 1.02
318.35 0.831 4.41 -1.62 0.936 2.7 -- -7.34 -0.104 6.23 1.122 83 4.1 1.27
321.25 0.835 4.37 -1.35 0.931 1.95 -- -- -0.107 6.25 1.509 76 4.1 1.29
357.47 0.881 4.43 -1.61 -- 3.37 -- -7.13 -0.0896 -- 1.429 83 4.06 1.34
360.06 0.89 4.39 -1.25 1.25 -- 0.117 -- -0.201 5.99 -- -- -- --
360.09 0.889 4.39 -1.25 1.25 -- -- -- -0.201 6 -- -- -- --
359.23 0.883 4.39 -1.38 -- 2.47 -- -- -0.0709 -- 1.874 83 3.88 1.53
368.98 0.895 4.36 -- 0.916 1.85 -- -- 0.011 6.28 1.596 75 4.12 1.23
441.36 0.982 4.41 -1.21 -- -- -- -- -0.173 -- -- -- -- --
400.99 0.937 4.36 -- 1.23 -- -- -- -0.0624 6.05 -- -- -- --
407.53 0.94 4.36 -- -- 2.37 -- -- 0.0697 -- 1.885 77 3.9 1.52
479.92 1.02 4.38 -- -- -- -- -- -0.0385 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 319.47 wind 1.0 90 < th dose independent rect. 4 1
2 321.08 wind 1.0 90 < th dose dependent rect. 4 1
4 322.36 humidity 50.0 1440 < th dose independent rect. 16 1
5 322.46 humidity 50.0 1440 < th dose dependent rect. 16 1
10 324.95 temperature 30.0 720 > th dose dependent rect. 18 1
25 326.15 wind 1.0 90 < th dose dependent rect. 4 6
32 327.15 wind 1.0 90 < th dose dependent rect. 4 11
34 327.58 humidity 90.0 90 > th dose dependent rect. 4 1
37 328.17 wind 1.0 90 < th dose dependent rect. 4 13
42 328.35 wind 1.0 90 < th dose dependent rect. 4 18
43 328.35 temperature 10.0 10 > th dose dependent rect. 6 22
47 329.20 humidity 90.0 90 > th dose independent rect. 4 1
48 329.23 wind 1.0 90 < th dose independent rect. 4 5
73 330.76 temperature 25.0 90 < th dose independent rect. 4 1
78 331.15 temperature 20.0 90 > th dose independent rect. 4 1
82 331.63 wind 3.0 10 < th dose dependent rect. 3 3
84 331.81 temperature 20.0 90 > th dose dependent rect. 4 1
86 331.98 wind 1.0 90 < th dose independent rect. 4 11
93 332.52 humidity 70.0 720 < th dose independent rect. 19 12
94 332.58 humidity 70.0 720 < th dose independent rect. 19 1
108 332.76 wind 7.0 1440 < th dose independent rect. 5 1
110 332.76 temperature 10.0 1440 > th dose independent rect. 5 1
113 332.76 temperature 30.0 1440 < th dose independent rect. 5 1
117 332.76 humidity 50.0 1440 > th dose independent rect. 5 1
126 332.76 atmosphere 995.0 1440 > th dose independent rect. 5 1
127 332.76 atmosphere 1015.0 1440 < th dose independent rect. 5 1
128 332.76 radiation 20.0 1440 < th dose independent rect. 5 1
137 332.76 temperature 10.0 1440 > th dose independent rect. 6 23
143 333.12 wind 1.0 90 < th dose independent rect. 4 18
144 333.18 wind 1.0 90 < th dose independent rect. 4 13
145 333.18 humidity 70.0 720 < th dose dependent rect. 19 12
151 333.22 humidity 70.0 720 < th dose dependent rect. 19 1
169 333.52 temperature 25.0 720 > th dose dependent rect. 21 1
174 333.82 humidity 50.0 1440 > th dose independent rect. 16 1
215 334.66 atmosphere 1015.0 90 < th dose dependent rect. 4 1
218 334.72 temperature 30.0 720 > th dose independent rect. 18 1
249 335.04 wind 9.0 14400 > th dose dependent rect. 12 1
250 335.13 wind 9.0 14400 < th dose independent rect. 3 11
269 335.47 wind 1.0 10 > th dose independent sin 4 NA
271 335.48 wind 9.0 14400 < th dose independent rect. 22 16
286 335.76 humidity 90.0 10 > th dose independent rect. 4 2
301 336.09 humidity 70.0 720 > th dose independent rect. 19 8
303 336.18 wind 9.0 14400 < th dose independent rect. 9 5
336 336.48 temperature 20.0 720 > th dose dependent rect. 6 1
343 336.57 humidity 80.0 14400 < th dose dependent rect. 23 7
346 336.58 temperature 15.0 10 > th dose dependent rect. 6 18
347 336.60 humidity 80.0 14400 < th dose dependent rect. 23 4
357 336.72 humidity 80.0 14400 < th dose dependent rect. 1 2
360 336.73 humidity 80.0 14400 < th dose dependent rect. 1 5
366 336.76 temperature 25.0 270 < th dose independent rect. 1 10
370 336.78 temperature 20.0 10 > th dose dependent rect. 4 2
387 336.88 wind 9.0 14400 < th dose independent sin 5 NA
390 336.90 humidity 90.0 10 > th dose dependent rect. 4 2
391 336.91 wind 9.0 14400 > th dose independent rect. 4 10
398 336.93 temperature 25.0 270 < th dose independent rect. 1 12
400 336.94 wind 9.0 14400 > th dose independent rect. 24 14
455 337.30 wind 9.0 14400 < th dose independent rect. 12 2
459 337.37 humidity 80.0 14400 > th dose independent rect. 1 5
460 337.37 humidity 80.0 14400 < th dose independent rect. 1 5
462 337.38 wind 9.0 14400 > th dose independent rect. 10 4
468 337.40 humidity 80.0 14400 > th dose independent rect. 3 2
551 337.75 wind 9.0 14400 > th dose independent rect. 19 19
563 337.82 radiation 1.0 90 < th dose independent rect. 4 1
570 337.87 radiation 10.0 90 < th dose dependent rect. 4 1
578 337.94 wind 9.0 14400 > th dose independent sin 5 NA
596 338.06 precipitation 0.1 90 < th dose independent rect. 4 1
597 338.06 precipitation 0.1 90 < th dose dependent rect. 4 1
606 338.10 temperature 10.0 90 > th dose independent rect. 4 1
609 338.10 humidity 50.0 90 > th dose independent rect. 4 1
612 338.10 atmosphere 995.0 90 > th dose independent rect. 4 1
613 338.10 atmosphere 1010.0 90 < th dose independent rect. 4 1
619 338.10 temperature 10.0 90 > th dose independent rect. 5 23
625 338.16 wind 7.0 14400 > th dose dependent rect. 4 10
627 338.17 wind 7.0 14400 > th dose dependent rect. 10 4
631 338.21 wind 9.0 14400 < th dose independent rect. 19 19
669 338.44 wind 9.0 14400 > th dose dependent rect. 22 16
723 338.60 wind 9.0 14400 > th dose independent rect. 12 1
733 338.64 temperature 25.0 270 < th dose independent rect. 1 4
765 338.77 temperature 20.0 270 > th dose dependent rect. 6 3
777 338.80 wind 3.0 10 < th dose dependent rect. 24 6
785 338.85 wind 9.0 90 < th dose independent rect. 5 23
799 338.90 wind 9.0 14400 > th dose dependent sin 5 NA
811 338.98 wind 1.0 10 < th dose independent rect. 4 19
849 339.11 wind 9.0 14400 > th dose dependent rect. 19 19
873 339.23 temperature 20.0 10 > th dose independent rect. 4 2
876 339.25 humidity 80.0 1440 > th dose independent rect. 7 1
879 339.26 atmosphere 995.0 4320 > th dose independent rect. 3 3
890 339.31 wind 3.0 43200 < th dose independent rect. 1 2
899 339.35 atmosphere 1005.0 10 > th dose independent rect. 5 1
928 339.50 wind 3.0 43200 > th dose independent rect. 2 1
943 339.56 humidity 80.0 1440 < th dose independent rect. 7 2
948 339.58 temperature 25.0 270 < th dose independent rect. 1 2
953 339.59 temperature 20.0 10 > th dose dependent rect. 6 8