Os02g0683500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to DNA-binding protein RAV1.
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Os02g0683500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to DNA-binding protein RAV1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 145.97 | 0.568 | 6.06 | 1.84 | 0.576 | 1.15 | 0.152 | -0.409 | 0.452 | 22.8 | 67.36 | 1197 | -- | -- |
| 146.12 | 0.563 | 6.07 | 1.8 | 0.608 | 1.13 | 0.226 | -- | 0.445 | 22.7 | 67.61 | 1169 | -- | -- |
| 145.99 | 0.563 | 6.07 | 1.84 | 0.606 | 1.15 | -- | -0.482 | 0.449 | 22.8 | 67.05 | 1170 | -- | -- |
| 146.32 | 0.563 | 6.07 | 1.79 | 0.605 | 1.14 | -- | -- | 0.442 | 22.8 | 67.61 | 1169 | -- | -- |
| 156.19 | 0.582 | 6.06 | 1.87 | -- | 1.05 | -- | -0.649 | 0.431 | -- | 63.4 | 1498 | -- | -- |
| 166.4 | 0.605 | 6.09 | 1.8 | 0.392 | -- | 0.316 | -- | 0.323 | 21.4 | -- | -- | -- | -- |
| 166.71 | 0.605 | 6.09 | 1.79 | 0.389 | -- | -- | -- | 0.321 | 21.7 | -- | -- | -- | -- |
| 156.68 | 0.583 | 6.06 | 1.79 | -- | 1.03 | -- | -- | 0.424 | -- | 64.93 | 1490 | -- | -- |
| 223.86 | 0.697 | 6.09 | -- | 0.576 | 1.37 | -- | -- | 0.313 | 23.1 | 81.75 | 1206 | -- | -- |
| 175.72 | 0.619 | 6.08 | 1.79 | -- | -- | -- | -- | 0.321 | -- | -- | -- | -- | -- |
| 251.11 | 0.741 | 6.13 | -- | 0.395 | -- | -- | -- | 0.122 | 22.1 | -- | -- | -- | -- |
| 234.77 | 0.714 | 6.08 | -- | -- | 1.33 | -- | -- | 0.316 | -- | 81.4 | 1519 | -- | -- |
| 260.54 | 0.753 | 6.12 | -- | -- | -- | -- | -- | 0.122 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 143.89 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 2 | 144.39 | humidity | 70 | 1440 | > th | dose dependent | rect. | 10 | 3 |
| 3 | 144.44 | humidity | 70 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 4 | 144.71 | humidity | 80 | 1440 | < th | dose independent | rect. | 20 | 20 |
| 9 | 145.00 | humidity | 80 | 1440 | > th | dose independent | rect. | 21 | 19 |
| 20 | 145.74 | humidity | 60 | 1440 | > th | dose dependent | rect. | 21 | 19 |
| 32 | 145.96 | humidity | 70 | 1440 | > th | dose dependent | rect. | 1 | 15 |
| 44 | 146.12 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 16 |
| 59 | 146.19 | humidity | 80 | 1440 | < th | dose independent | rect. | 24 | 16 |
| 82 | 146.35 | humidity | 70 | 1440 | > th | dose dependent | sin | 2 | NA |
| 83 | 146.35 | humidity | 80 | 720 | > th | dose dependent | rect. | 8 | 16 |
| 92 | 146.37 | humidity | 90 | 1440 | < th | dose dependent | rect. | 20 | 18 |
| 106 | 146.44 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 111 | 146.46 | humidity | 70 | 720 | > th | dose dependent | rect. | 18 | 6 |
| 123 | 146.52 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 180 | 146.77 | humidity | 80 | 1440 | < th | dose independent | sin | 2 | NA |
| 199 | 146.84 | humidity | 80 | 1440 | < th | dose independent | rect. | 5 | 10 |
| 231 | 146.95 | humidity | 80 | 1440 | > th | dose independent | rect. | 5 | 11 |
| 236 | 146.98 | humidity | 80 | 1440 | > th | dose independent | sin | 2 | NA |
| 265 | 147.07 | humidity | 60 | 1440 | > th | dose dependent | rect. | 8 | 22 |
| 315 | 147.22 | humidity | 60 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 334 | 147.26 | humidity | 60 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 340 | 147.29 | humidity | 90 | 1440 | < th | dose dependent | sin | 6 | NA |
| 356 | 147.32 | humidity | 60 | 1440 | > th | dose dependent | no | NA | NA |
| 370 | 147.36 | humidity | 80 | 1440 | < th | dose independent | rect. | 9 | 6 |
| 390 | 147.40 | humidity | 60 | 1440 | > th | dose dependent | rect. | 5 | 23 |
| 439 | 147.49 | humidity | 80 | 1440 | < th | dose independent | rect. | 24 | 22 |
| 447 | 147.50 | humidity | 90 | 1440 | < th | dose dependent | rect. | 15 | 21 |
| 507 | 147.64 | humidity | 80 | 720 | > th | dose dependent | rect. | 5 | 19 |
| 514 | 147.66 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 22 |
| 602 | 147.80 | humidity | 80 | 1440 | < th | dose independent | no | NA | NA |
| 621 | 147.83 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 22 |
| 661 | 147.88 | radiation | 10 | 1440 | < th | dose dependent | rect. | 15 | 2 |
| 669 | 147.89 | humidity | 80 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 694 | 147.92 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 1 |
| 701 | 147.92 | humidity | 90 | 1440 | < th | dose dependent | rect. | 9 | 23 |
| 732 | 147.98 | humidity | 70 | 720 | > th | dose dependent | sin | 15 | NA |
| 773 | 148.05 | humidity | 90 | 1440 | < th | dose dependent | no | NA | NA |
| 813 | 148.11 | humidity | 90 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 819 | 148.12 | humidity | 80 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 880 | 148.20 | humidity | 90 | 1440 | < th | dose dependent | rect. | 1 | 23 |