Os04g0581400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Transcriptional factor B3 family protein.
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Os04g0581400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Transcriptional factor B3 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 123.32 | 0.522 | 7.52 | 1.23 | 3.01 | 2.36 | -2.09 | -5.07 | -0.166 | 19.6 | 0.04977 | 834 | -- | -- |
| 126.45 | 0.524 | 7.59 | 1.02 | 3.2 | 2.68 | 0.787 | -- | -0.242 | 20 | 0.3573 | 949 | -- | -- |
| 125.29 | 0.521 | 7.52 | 1.2 | 3.34 | 2.83 | -- | -2.16 | -0.151 | 19.7 | 0.06 | 856 | -- | -- |
| 125.23 | 0.521 | 7.59 | 1.1 | 3.7 | 3.45 | -- | -- | -0.166 | 20.1 | 0.3 | 969 | -- | -- |
| 215.66 | 0.688 | 7.49 | 0.809 | -- | 0.79 | -- | -0.732 | -0.295 | -- | 0.06 | 856 | -- | -- |
| 153.2 | 0.58 | 7.55 | 0.76 | 1.54 | -- | 0.23 | -- | -0.34 | 20.7 | -- | -- | -- | -- |
| 153.37 | 0.58 | 7.55 | 0.752 | 1.54 | -- | -- | -- | -0.341 | 20.7 | -- | -- | -- | -- |
| 213.13 | 0.683 | 7.51 | 0.774 | -- | 0.814 | -- | -- | -0.36 | -- | 0.3 | 969 | -- | -- |
| 157.83 | 0.585 | 7.59 | -- | 3.74 | 3.43 | -- | -- | -0.219 | 20 | 0.3562 | 957 | -- | -- |
| 286.96 | 0.792 | 7.5 | 0.749 | -- | -- | -- | -- | -0.353 | -- | -- | -- | -- | -- |
| 168.28 | 0.607 | 7.56 | -- | 1.53 | -- | -- | -- | -0.424 | 20.8 | -- | -- | -- | -- |
| 228.92 | 0.707 | 7.53 | -- | -- | 0.808 | -- | -- | -0.446 | -- | 0.3 | 969 | -- | -- |
| 301.77 | 0.811 | 7.52 | -- | -- | -- | -- | -- | -0.436 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 124.92 | radiation | 1 | 720 | < th | dose dependent | rect. | 21 | 22 |
| 6 | 127.73 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 22 |
| 7 | 127.94 | radiation | 1 | 720 | < th | dose independent | rect. | 21 | 22 |
| 8 | 128.38 | wind | 9 | 14400 | < th | dose dependent | rect. | 11 | 2 |
| 11 | 128.52 | wind | 1 | 14400 | > th | dose dependent | rect. | 11 | 2 |
| 17 | 129.11 | wind | 3 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 18 | 129.23 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 22 |
| 22 | 129.46 | wind | 3 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 24 | 129.51 | temperature | 10 | 30 | > th | dose dependent | rect. | 5 | 23 |
| 26 | 129.58 | temperature | 15 | 30 | > th | dose dependent | rect. | 5 | 21 |
| 32 | 129.93 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 34 | 129.96 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 22 |
| 40 | 130.04 | radiation | 1 | 720 | < th | dose dependent | no | NA | NA |
| 42 | 130.05 | radiation | 1 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 44 | 130.08 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 15 |
| 67 | 130.27 | wind | 7 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 70 | 130.34 | wind | 7 | 14400 | < th | dose independent | rect. | 11 | 3 |
| 77 | 130.42 | wind | 7 | 14400 | < th | dose independent | rect. | 10 | 6 |
| 78 | 130.42 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 7 |
| 79 | 130.42 | wind | 7 | 14400 | > th | dose dependent | rect. | 5 | 11 |
| 81 | 130.47 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 19 |
| 88 | 130.53 | radiation | 1 | 1440 | > th | dose independent | rect. | 15 | 4 |
| 100 | 130.56 | radiation | 1 | 1440 | > th | dose independent | sin | 15 | NA |
| 103 | 130.58 | wind | 7 | 14400 | > th | dose independent | rect. | 10 | 6 |
| 104 | 130.59 | wind | 7 | 14400 | > th | dose dependent | rect. | 9 | 7 |
| 107 | 130.60 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 14 |
| 108 | 130.61 | wind | 7 | 14400 | > th | dose dependent | rect. | 7 | 9 |
| 110 | 130.63 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 13 |
| 113 | 130.64 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 4 |
| 130 | 130.67 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 10 |
| 131 | 130.67 | radiation | 1 | 1440 | < th | dose dependent | sin | 14 | NA |
| 132 | 130.68 | radiation | 1 | 1440 | < th | dose independent | sin | 15 | NA |
| 133 | 130.68 | wind | 7 | 14400 | > th | dose independent | rect. | 10 | 4 |
| 138 | 130.70 | radiation | 1 | 1440 | > th | dose independent | rect. | 15 | 15 |
| 140 | 130.70 | humidity | 90 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 147 | 130.74 | radiation | 1 | 720 | < th | dose dependent | rect. | 6 | 13 |
| 160 | 130.82 | wind | 7 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 167 | 130.84 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 4 |
| 168 | 130.84 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 6 |
| 178 | 130.87 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 10 |
| 182 | 130.88 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 21 |
| 191 | 130.91 | wind | 7 | 14400 | > th | dose dependent | rect. | 24 | 16 |
| 268 | 131.30 | radiation | 1 | 720 | < th | dose independent | rect. | 6 | 13 |
| 288 | 131.39 | wind | 7 | 14400 | > th | dose dependent | sin | 2 | NA |
| 312 | 131.44 | humidity | 80 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 317 | 131.45 | wind | 7 | 14400 | > th | dose independent | rect. | 5 | 11 |
| 329 | 131.49 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 344 | 131.53 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 349 | 131.54 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 358 | 131.57 | wind | 7 | 14400 | < th | dose independent | rect. | 5 | 11 |
| 371 | 131.59 | radiation | 1 | 720 | < th | dose dependent | sin | 23 | NA |
| 381 | 131.64 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 20 |
| 396 | 131.69 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 7 |
| 409 | 131.74 | wind | 7 | 14400 | > th | dose dependent | rect. | 10 | 10 |
| 413 | 131.76 | humidity | 90 | 720 | > th | dose dependent | rect. | 9 | 15 |
| 467 | 131.92 | wind | 7 | 14400 | > th | dose dependent | rect. | 5 | 15 |
| 471 | 131.93 | wind | 9 | 14400 | < th | dose independent | rect. | 22 | 17 |
| 486 | 131.96 | wind | 7 | 14400 | > th | dose dependent | rect. | 7 | 13 |
| 530 | 132.08 | radiation | 1 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 590 | 132.15 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 17 |
| 591 | 132.15 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 19 |
| 611 | 132.17 | radiation | 1 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 664 | 132.22 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 10 |
| 665 | 132.22 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 12 |
| 678 | 132.25 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 16 |
| 682 | 132.26 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 15 |
| 696 | 132.29 | humidity | 90 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 716 | 132.32 | radiation | 1 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 756 | 132.38 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 22 |
| 779 | 132.43 | radiation | 1 | 1440 | > th | dose independent | rect. | 10 | 9 |
| 847 | 132.50 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 871 | 132.52 | radiation | 1 | 1440 | > th | dose independent | rect. | 7 | 12 |
| 917 | 132.56 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 18 |
| 941 | 132.59 | radiation | 1 | 720 | < th | dose independent | sin | 23 | NA |
| 979 | 132.63 | wind | 7 | 14400 | > th | dose independent | sin | 1 | NA |
| 988 | 132.64 | temperature | 25 | 720 | < th | dose independent | rect. | 8 | 16 |