BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0533900 Os10g0533900|AK104667
(246 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0533900 Protein of unknown function DUF862, eukaryotic... 469 e-132
Os06g0107000 Protein of unknown function DUF862, eukaryotic... 176 1e-44
Os06g0182100 Protein of unknown function DUF862, eukaryotic... 99 2e-21
Os03g0100900 Protein of unknown function DUF862, eukaryotic... 84 1e-16
Os06g0560400 Protein of unknown function DUF862, eukaryotic... 82 3e-16
Os04g0548000 Protein of unknown function DUF862, eukaryotic... 82 4e-16
Os02g0655500 Protein of unknown function DUF862, eukaryotic... 82 4e-16
Os03g0198500 Protein of unknown function DUF862, eukaryotic... 77 2e-14
>Os10g0533900 Protein of unknown function DUF862, eukaryotic domain containing
protein
Length = 246
Score = 469 bits (1206), Expect = e-132, Method: Compositional matrix adjust.
Identities = 227/246 (92%), Positives = 227/246 (92%)
Query: 1 MKEVVLHVYDVTNSDSEKTNNTILQINRIFKDRIGLGGIFHSAVQVYGEEEWSFGFCENG 60
MKEVVLHVYDVTNSDSEKTNNTILQINRIFKDRIGLGGIFHSAVQVYGEEEWSFGFCENG
Sbjct: 1 MKEVVLHVYDVTNSDSEKTNNTILQINRIFKDRIGLGGIFHSAVQVYGEEEWSFGFCENG 60
Query: 61 SGVFSCPIGKNPMYTYRECIVLGETECSIATVNRILRELSREWPGHSYDLLSRNCNHFCD 120
SGVFSCPIGKNPMYTYRECIVLGETECSIATVNRILRELSREWPGHSYDLLSRNCNHFCD
Sbjct: 61 SGVFSCPIGKNPMYTYRECIVLGETECSIATVNRILRELSREWPGHSYDLLSRNCNHFCD 120
Query: 121 VLCERLAVPKLPGWVNRFANAGDTAVVVAENTAVKFRQAKTEIVNASRVAYRFMAGLASK 180
VLCERLAVPKLPGWVNRFANAGDTAVVVAENTAVKFRQAKTEIVNASRVAYRFMAGLASK
Sbjct: 121 VLCERLAVPKLPGWVNRFANAGDTAVVVAENTAVKFRQAKTEIVNASRVAYRFMAGLASK 180
Query: 181 NQNPQPESPSNQSRNGPTFQGTWFKNIISNGAKPXXXXXXXXXXXXXXXXXXXLQNQKPS 240
NQNPQPESPSNQSRNGPTFQGTWFKNIISNGAKP LQNQKPS
Sbjct: 181 NQNPQPESPSNQSRNGPTFQGTWFKNIISNGAKPSSSESTSSHDTGTGGDESSLQNQKPS 240
Query: 241 EQSTRL 246
EQSTRL
Sbjct: 241 EQSTRL 246
>Os06g0107000 Protein of unknown function DUF862, eukaryotic domain containing
protein
Length = 187
Score = 176 bits (446), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 84/142 (59%), Positives = 101/142 (71%), Gaps = 2/142 (1%)
Query: 73 MYTYRECIVLGETECSIATVNRILRELSREWPGHSYDLLSRNCNHFCDVLCERLAVPKLP 132
MYTYRE IVLG+T CSI TVN+ILRELS +WPG SY+LLSRNCNHFC+ CE+L VPKLP
Sbjct: 1 MYTYRESIVLGKTTCSIFTVNQILRELSWKWPGGSYELLSRNCNHFCNTFCEKLDVPKLP 60
Query: 133 GWVNRFANAGDTAVVVAENTAVKFRQAKTEIVNASRVAYRFMAGLASKNQNPQPESPSNQ 192
WVNRFANAGD A+ VAENTA K +QAK +I A + A ++ G +S +P S
Sbjct: 61 AWVNRFANAGDAALEVAENTAEKLKQAKKDIAGACKAATTYLTGASS--SSPSNADDSGG 118
Query: 193 SRNGPTFQGTWFKNIISNGAKP 214
S N F+GTW ++II KP
Sbjct: 119 STNSSLFEGTWLRSIIGISMKP 140
>Os06g0182100 Protein of unknown function DUF862, eukaryotic domain containing
protein
Length = 271
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 89/161 (55%), Gaps = 23/161 (14%)
Query: 4 VVLHVYDVTNSDSEKTNNTILQINRIFKDRIGLGGIFHSAVQ-VYGEEE-----WSFGFC 57
V L+VYDVT ++ + +GLG ++HS VQ +Y +++G
Sbjct: 46 VYLNVYDVTPANG-------------YARWLGLG-VYHSGVQGMYALLSSPSILYAYGAH 91
Query: 58 EN-GSGVFSCPIGKNPMYTYRECIVLGETECSIATVNRILRELSREWPGHSYDLLSRNCN 116
+ GSG+F + P Y +RE I++G TE + A V ++ +L+ ++PG +Y+L+SRNCN
Sbjct: 92 DGAGSGIFEVAPRRCPGYAFREAILVGTTELTRAEVRAVMADLAADFPGDAYNLVSRNCN 151
Query: 117 HFCDVLCERLAVPKLPGWVNRFANAGD--TAVVVAENTAVK 155
HFCD C RL ++P WVNR A G T V+ AV+
Sbjct: 152 HFCDAACRRLVRARIPRWVNRLAKIGVVFTCVIPGNGAAVR 192
>Os03g0100900 Protein of unknown function DUF862, eukaryotic domain containing
protein
Length = 245
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 63/106 (59%), Gaps = 2/106 (1%)
Query: 38 GIFHSAVQVYGEEEWSFGFCEN-GSGVFSCPIGKNPMYTYRECIVLGETECSIATVNRIL 96
GIFHS ++V+G E + FG E SGVF P + +R + +G T+ S + V +
Sbjct: 70 GIFHSGIEVHGME-YGFGAHEYPTSGVFQVEPKSCPGFIFRRSVCVGSTDMSRSEVRSFI 128
Query: 97 RELSREWPGHSYDLLSRNCNHFCDVLCERLAVPKLPGWVNRFANAG 142
+L+ ++ G +Y L+++NCNHF +C+RL +PGWVNR A G
Sbjct: 129 EDLAEDYHGDTYHLIAKNCNHFTADICKRLTGKPIPGWVNRLARLG 174
>Os06g0560400 Protein of unknown function DUF862, eukaryotic domain containing
protein
Length = 216
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 76/140 (54%), Gaps = 16/140 (11%)
Query: 4 VVLHVYDVTNSDSEKTNNTILQINRIFKDRIGLGGIFHSAVQVYGEEEWSFGFCEN-GSG 62
VVL+VYD+T NN + GLG IFHSAV+V+G E +SFG ++ SG
Sbjct: 27 VVLNVYDLT-----PLNN--------YLHWCGLG-IFHSAVEVHGSE-YSFGAHDHPTSG 71
Query: 63 VFSCPIGKNPMYTYRECIVLGETECSIATVNRILRELSREWPGHSYDLLSRNCNHFCDVL 122
VF P + YR I +G T + ++ ++ E+ G +Y L+S+NCNHF D L
Sbjct: 72 VFEVEPKCCPGFMYRCSIFIGRTSLNPLEFRDFIQRMASEYHGDTYHLISKNCNHFTDDL 131
Query: 123 CERLAVPKLPGWVNRFANAG 142
RL +PGWVNR A G
Sbjct: 132 STRLTGKPIPGWVNRPAKLG 151
>Os04g0548000 Protein of unknown function DUF862, eukaryotic domain containing
protein
Length = 207
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 75/140 (53%), Gaps = 16/140 (11%)
Query: 4 VVLHVYDVTNSDSEKTNNTILQINRIFKDRIGLGGIFHSAVQVYGEEEWSFGFCE-NGSG 62
VV++VYD+T NN + GLG IFHS ++V+G E + FG E SG
Sbjct: 18 VVVNVYDLT-----PMNNYLYWF--------GLG-IFHSGIEVHGVE-YGFGAHEFPTSG 62
Query: 63 VFSCPIGKNPMYTYRECIVLGETECSIATVNRILRELSREWPGHSYDLLSRNCNHFCDVL 122
VF P + YR + +G T S A + +L+ ++ G+SY L+S+NCNHF D +
Sbjct: 63 VFEVEPKNCPGFVYRRSVRMGTTGMSRAEFRSFIEKLTGKYNGNSYHLISKNCNHFTDDV 122
Query: 123 CERLAVPKLPGWVNRFANAG 142
+ L +PGWVNR A G
Sbjct: 123 SKNLTGKPIPGWVNRLARVG 142
>Os02g0655500 Protein of unknown function DUF862, eukaryotic domain containing
protein
Length = 204
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 75/140 (53%), Gaps = 16/140 (11%)
Query: 4 VVLHVYDVTNSDSEKTNNTILQINRIFKDRIGLGGIFHSAVQVYGEEEWSFGFCE-NGSG 62
V+L+VYD+T N+ + + G+FHS ++V+G E + FG + SG
Sbjct: 12 VLLNVYDLT-----PANDYLYWLGF---------GVFHSGIEVHGME-YGFGAHDFPSSG 56
Query: 63 VFSCPIGKNPMYTYRECIVLGETECSIATVNRILRELSREWPGHSYDLLSRNCNHFCDVL 122
VF P + YR+ + LG T+ S + +L+ ++ G+SY L+S+NCNHF D +
Sbjct: 57 VFEVESKSCPGFIYRKTVWLGTTDMSHGEYRSFIEKLAGKYHGNSYHLVSKNCNHFTDDV 116
Query: 123 CERLAVPKLPGWVNRFANAG 142
C+ L +P WVNR A G
Sbjct: 117 CKNLTGKPIPSWVNRLARVG 136
>Os03g0198500 Protein of unknown function DUF862, eukaryotic domain containing
protein
Length = 247
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 61/106 (57%), Gaps = 2/106 (1%)
Query: 38 GIFHSAVQVYGEEEWSFGFCEN-GSGVFSCPIGKNPMYTYRECIVLGETECSIATVNRIL 96
GIFHS ++V+G E ++FG + SGVF + P + +R+ I LG T V + +
Sbjct: 64 GIFHSGIEVHGVE-YAFGAHDYPSSGVFEVEPRQCPGFRFRKSIFLGTTCLDPIQVRQFM 122
Query: 97 RELSREWPGHSYDLLSRNCNHFCDVLCERLAVPKLPGWVNRFANAG 142
S + G +Y L+++NCNHFC +C +L K+P WVNR A G
Sbjct: 123 ELQSVNYNGDTYHLITKNCNHFCKDMCYKLTGNKIPKWVNRLARIG 168
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.133 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,636,365
Number of extensions: 294206
Number of successful extensions: 802
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 796
Number of HSP's successfully gapped: 8
Length of query: 246
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 148
Effective length of database: 11,918,829
Effective search space: 1763986692
Effective search space used: 1763986692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)