FiT-DB / Search/ Help/ Sample detail

Os10g0533900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF862, eukaryotic domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.3 (0.015) R2 : 0.0393
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.137 (0.0317) R2dN8 : 0.0507 R2N8 : 0.0393
σ : 0.283
deviance : 36.86
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
11.08 0.156 12.3 0.636 0.187 -0.265 -0.235 -0.158 0.197 23.2 10.45 10 -- --
11.08 0.155 12.3 0.644 0.19 -0.287 -0.0666 -- 0.207 23.2 16.12 15 -- --
11.1 0.155 12.3 0.648 0.228 -0.265 -- -0.00172 0.22 23.5 16.12 23 -- --
11.07 0.155 12.3 0.641 0.206 -0.274 -- -- 0.2 23.3 16.12 15 -- --
12.32 0.163 12.3 0.654 -- -0.395 -- 0.00652 0.234 -- 12.01 39 -- --
13.52 0.172 12.3 0.613 0.454 -- -0.0114 -- 0.2 23.8 -- -- -- --
13.52 0.172 12.3 0.614 0.454 -- -- -- 0.201 23.9 -- -- -- --
12.32 0.163 12.3 0.653 -- -0.395 -- -- 0.233 -- 12.01 39 -- --
21.53 0.216 12.3 -- 0.264 -0.238 -- -- 0.137 23.7 18.94 23 -- --
26.48 0.24 12.3 0.627 -- -- -- -- 0.206 -- -- -- -- --
23.45 0.227 12.3 -- 0.461 -- -- -- 0.132 23.9 -- -- -- --
21.2 0.214 12.3 -- -- -0.402 -- -- 0.146 -- 9.545 46 -- --
36.86 0.283 12.3 -- -- -- -- -- 0.137 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 9.79 radiation 10.0 270 < th dose independent rect. 2 5
2 9.85 temperature 30.0 270 < th dose independent rect. 18 8
3 9.87 wind 7.0 270 < th dose independent rect. 18 8
5 9.89 humidity 60.0 270 > th dose independent rect. 18 8
6 9.95 radiation 1.0 270 < th dose independent rect. 18 8
7 9.97 temperature 15.0 270 > th dose independent rect. 7 6
8 9.97 radiation 20.0 270 < th dose dependent rect. 2 5
10 9.99 precipitation 0.1 270 < th dose independent rect. 1 6
12 9.99 precipitation 0.1 270 < th dose dependent rect. 1 6
13 9.99 radiation 10.0 270 < th dose dependent rect. 18 8
14 10.00 humidity 70.0 270 > th dose independent rect. 1 6
23 10.02 temperature 10.0 270 > th dose independent rect. 18 8
28 10.02 temperature 10.0 270 > th dose independent rect. 2 16
29 10.02 atmosphere 1015.0 270 < th dose independent rect. 2 16
30 10.02 radiation 40.0 90 < th dose dependent rect. 13 20
31 10.03 radiation 10.0 270 < th dose independent rect. 3 3
33 10.03 wind 9.0 270 < th dose independent rect. 7 18
37 10.04 wind 9.0 270 < th dose independent rect. 1 6
38 10.04 temperature 10.0 270 > th dose independent rect. 1 6
40 10.04 temperature 30.0 270 < th dose independent rect. 1 6
41 10.04 humidity 50.0 270 > th dose independent rect. 1 6
43 10.04 atmosphere 995.0 270 > th dose independent rect. 1 6
44 10.04 atmosphere 1015.0 270 < th dose independent rect. 1 6
48 10.04 atmosphere 995.0 270 > th dose independent rect. 18 8
49 10.04 temperature 10.0 270 > th dose independent rect. 7 18
50 10.04 precipitation 0.1 270 < th dose independent rect. 7 18
52 10.04 precipitation 0.1 270 < th dose dependent rect. 7 18
55 10.05 wind 9.0 270 < th dose independent rect. 7 6
56 10.05 radiation 1.0 270 > th dose independent rect. 7 6
57 10.05 precipitation 0.1 270 < th dose independent rect. 7 6
58 10.05 precipitation 0.1 270 < th dose independent rect. 18 8
59 10.05 precipitation 0.1 270 < th dose independent rect. 2 16
61 10.05 precipitation 0.1 270 < th dose dependent rect. 7 6
62 10.05 precipitation 0.1 270 < th dose dependent rect. 18 8
63 10.05 precipitation 0.1 270 < th dose dependent rect. 2 16
65 10.06 atmosphere 995.0 270 > th dose independent rect. 7 6
66 10.06 atmosphere 1015.0 270 < th dose independent rect. 7 6
67 10.06 temperature 10.0 270 > th dose independent rect. 13 18
78 10.08 wind 9.0 270 < th dose independent rect. 2 16
81 10.08 radiation 10.0 270 < th dose dependent rect. 3 3
96 10.09 wind 9.0 270 < th dose independent rect. 13 18
99 10.09 radiation 20.0 90 < th dose independent rect. 13 20
103 10.10 atmosphere 1015.0 270 < th dose independent rect. 7 18
106 10.10 temperature 10.0 270 > th dose dependent rect. 2 5
107 10.10 humidity 50.0 270 > th dose dependent rect. 1 6
110 10.11 radiation 10.0 10 < th dose independent rect. 5 16
114 10.12 radiation 40.0 270 < th dose independent rect. 13 17
120 10.13 radiation 20.0 90 < th dose independent rect. 15 17
122 10.13 radiation 20.0 10 < th dose dependent rect. 5 16
123 10.13 radiation 40.0 10 < th dose dependent rect. 14 19
137 10.16 precipitation 0.1 270 < th dose independent rect. 3 3
138 10.16 humidity 50.0 270 > th dose independent rect. 7 6
140 10.16 precipitation 0.1 270 < th dose dependent rect. 3 3
145 10.17 precipitation 0.1 270 < th dose independent rect. 13 18
149 10.17 precipitation 0.1 270 < th dose dependent rect. 13 18
150 10.18 atmosphere 1010.0 270 < th dose independent rect. 3 3
160 10.18 temperature 10.0 270 > th dose dependent rect. 3 3
168 10.19 temperature 10.0 270 > th dose dependent rect. 19 7
189 10.21 wind 9.0 270 < th dose independent rect. 6 21
196 10.22 wind 9.0 270 < th dose independent rect. 3 3
197 10.22 temperature 10.0 270 > th dose independent rect. 3 3
199 10.22 temperature 30.0 270 < th dose independent rect. 3 3
200 10.22 humidity 50.0 270 > th dose independent rect. 3 3
203 10.22 atmosphere 995.0 270 > th dose independent rect. 3 3
212 10.22 humidity 50.0 270 > th dose independent rect. 7 18
215 10.22 temperature 10.0 270 > th dose independent rect. 6 21
218 10.22 radiation 10.0 270 < th dose dependent rect. 2 15
251 10.24 atmosphere 995.0 270 > th dose independent rect. 2 16
265 10.25 atmosphere 995.0 270 > th dose independent rect. 13 18
281 10.26 atmosphere 1015.0 270 < th dose independent rect. 18 8
288 10.26 humidity 50.0 270 > th dose dependent rect. 3 3
329 10.28 wind 1.0 270 > th dose independent rect. 13 17
344 10.29 wind 9.0 270 < th dose dependent rect. 2 5
347 10.29 wind 9.0 270 < th dose dependent rect. 18 8
361 10.30 wind 1.0 270 > th dose independent rect. 12 8
378 10.31 wind 9.0 270 < th dose dependent rect. 7 6
427 10.36 wind 1.0 270 > th dose independent rect. 1 6
447 10.37 wind 1.0 270 > th dose independent rect. 7 6
471 10.38 atmosphere 995.0 270 > th dose independent rect. 7 18
487 10.39 wind 9.0 270 < th dose dependent rect. 3 3
500 10.40 wind 9.0 90 < th dose independent rect. 21 16
501 10.40 atmosphere 1015.0 90 < th dose independent rect. 21 16
504 10.40 radiation 40.0 10 < th dose independent rect. 14 19
508 10.41 temperature 20.0 10 > th dose independent rect. 9 5
535 10.42 humidity 90.0 90 < th dose independent rect. 8 7
539 10.42 temperature 10.0 90 > th dose independent rect. 13 8
547 10.42 atmosphere 1010.0 90 < th dose independent rect. 13 8
554 10.42 temperature 10.0 90 > th dose independent rect. 21 16
556 10.42 atmosphere 995.0 90 > th dose independent rect. 21 16
569 10.42 humidity 50.0 270 > th dose dependent rect. 18 8
586 10.44 temperature 15.0 270 > th dose independent rect. 9 1
588 10.44 humidity 90.0 10 < th dose independent rect. 9 5
594 10.44 wind 9.0 90 < th dose independent rect. 13 8
607 10.45 radiation 1.0 270 > th dose independent rect. 9 1
635 10.45 radiation 40.0 90 < th dose independent rect. 13 8
657 10.46 radiation 10.0 10 > th dose independent rect. 9 5
669 10.46 humidity 50.0 10 > th dose independent rect. 14 19
673 10.47 wind 9.0 10 < th dose independent rect. 9 5
691 10.47 precipitation 0.1 90 < th dose independent rect. 21 16
708 10.47 precipitation 0.1 90 < th dose dependent rect. 21 16
722 10.48 temperature 15.0 10 > th dose independent rect. 14 19
735 10.49 temperature 10.0 10 > th dose independent rect. 9 5
737 10.49 atmosphere 995.0 10 > th dose independent rect. 9 5
738 10.49 atmosphere 1015.0 10 < th dose independent rect. 9 5
739 10.49 precipitation 0.1 10 < th dose independent rect. 9 5
754 10.49 radiation 20.0 10 < th dose dependent sin 0 NA
755 10.49 precipitation 0.1 10 < th dose dependent rect. 9 5
780 10.50 wind 9.0 10 < th dose independent rect. 14 19
798 10.51 precipitation 0.1 270 < th dose independent rect. 12 8
814 10.51 precipitation 0.1 270 < th dose dependent rect. 12 8
821 10.52 wind 9.0 270 < th dose independent rect. 9 1
823 10.52 atmosphere 995.0 270 > th dose independent rect. 9 1
824 10.52 atmosphere 1015.0 270 < th dose independent rect. 9 1
825 10.52 precipitation 0.1 270 < th dose independent rect. 9 1
843 10.52 temperature 10.0 270 > th dose independent rect. 10 23
844 10.52 precipitation 0.1 270 < th dose dependent rect. 9 1
854 10.52 wind 9.0 270 < th dose dependent rect. 7 18
891 10.54 humidity 50.0 270 > th dose independent rect. 9 1
900 10.54 radiation 1.0 10 > th dose independent rect. 9 7
913 10.54 radiation 10.0 270 < th dose dependent sin 4 NA
925 10.55 radiation 10.0 10 > th dose independent sin 0 NA
970 10.55 humidity 50.0 270 > th dose independent rect. 20 15