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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0182100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF862, eukaryotic domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.49 (0.0442) R2 : 0.671
β1 : -1.13 (0.182) R2dD : 0.039 R2D : 0.0831
β2 : 2.11 (0.115) R2dC : 0.263 R2C : 0.332
β3 : 1.79 (0.181) R2dE : 0.0865 R2E : 0.241
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -4.05 (0.538) R2dD*E : 0.0562 R2D*E : 0.143
γ1 : -0.624 (0.0978) R2dN8 : 0.0448 R2N8 : 0.0507
σ : 0.801
deviance : 295.67
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_____
C
peak time of C : 7.16
E
wheather : temperature
threshold : 20.58
memory length : 502
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 2.41
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
297.93 0.811 4.46 -0.956 2.18 1.59 0.942 -4.41 -0.562 7.04 20.56 709 4.22 --
322.99 0.837 4.52 -1.43 2.32 2.4 -0.0615 -- -0.669 6.86 19.09 833 5.88 --
295.67 0.801 4.49 -1.13 2.11 1.79 -- -4.05 -0.624 7.16 20.58 502 2.41 --
321.24 0.835 4.55 -1.48 2.23 2.42 -- -- -0.716 6.9 19.1 776 5 --
425.41 0.961 4.54 -1.53 -- 2.52 -- -2.5 -0.456 -- 25.17 496 2.23 --
403.57 0.942 4.62 -2.14 2.45 -- -1.24 -- -1.08 7.42 -- -- -- --
407.76 0.946 4.62 -2.17 2.45 -- -- -- -1.08 7.38 -- -- -- --
409.74 0.943 4.68 -2.25 -- 2.61 -- -- -1.13 -- 34.2 752 4.89 --
354.9 0.877 4.46 -- 2.35 3 -- -- -0.407 7.17 18.9 2284 6.57 --
727.73 1.26 4.67 -2.13 -- -- -- -- -1.04 -- -- -- -- --
531.97 1.08 4.56 -- 2.43 -- -- -- -0.839 7.44 -- -- -- --
531.97 1.07 4.63 -- -- 2.42 -- -- -0.84 -- 52.46 2413 6.67 --
847.48 1.36 4.62 -- -- -- -- -- -0.805 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 299.00 temperature 20.0 720 > th dose independent rect. 19 13
3 299.66 temperature 20.0 720 > th dose independent rect. 20 11
10 303.26 temperature 20.0 720 < th dose independent sin 10 NA
11 303.31 temperature 20.0 720 < th dose independent rect. 19 14
17 303.85 temperature 20.0 720 > th dose independent sin 10 NA
28 304.83 temperature 20.0 720 < th dose independent rect. 21 9
96 311.28 temperature 15.0 720 > th dose dependent rect. 21 10
101 311.49 temperature 20.0 720 > th dose independent rect. 21 6
115 312.88 temperature 25.0 720 < th dose dependent rect. 21 8
117 312.95 temperature 20.0 1440 < th dose independent rect. 5 1
152 314.95 radiation 20.0 1440 < th dose independent rect. 11 1
182 316.42 temperature 25.0 720 < th dose dependent sin 10 NA
203 317.12 radiation 30.0 14400 > th dose independent rect. 7 1
244 318.00 temperature 25.0 270 < th dose dependent rect. 23 12
271 319.10 temperature 20.0 1440 > th dose independent rect. 5 1
289 319.71 radiation 20.0 14400 > th dose dependent rect. 7 1
360 321.28 temperature 15.0 270 > th dose dependent sin 8 NA
379 321.66 temperature 25.0 270 < th dose dependent sin 6 NA
440 323.39 temperature 15.0 720 > th dose dependent sin 10 NA
489 324.14 radiation 20.0 1440 < th dose dependent rect. 11 1
546 325.36 temperature 20.0 1440 > th dose independent rect. 22 1
591 326.25 wind 7.0 43200 < th dose independent rect. 10 2
602 326.53 temperature 20.0 1440 < th dose independent rect. 22 1
619 326.91 wind 7.0 43200 > th dose independent rect. 10 2
622 326.93 wind 5.0 43200 > th dose dependent rect. 10 2
625 326.96 temperature 20.0 720 > th dose independent no NA NA
636 327.17 temperature 20.0 720 < th dose independent no NA NA
654 327.49 wind 7.0 43200 < th dose independent rect. 8 5
657 327.56 temperature 10.0 10 > th dose dependent sin 6 NA
664 327.67 wind 7.0 43200 > th dose independent rect. 8 5
698 328.28 temperature 20.0 720 > th dose independent rect. 4 23
700 328.35 temperature 20.0 4320 < th dose independent rect. 18 1
722 328.66 radiation 30.0 4320 < th dose independent rect. 16 17
742 329.01 humidity 50.0 43200 > th dose independent rect. 7 2
752 329.30 humidity 50.0 43200 < th dose independent rect. 8 1
766 329.44 temperature 20.0 720 < th dose independent rect. 24 23
798 329.80 temperature 20.0 720 > th dose independent rect. 2 23
851 330.40 precipitation 0.1 43200 > th dose independent rect. 7 3
860 330.50 precipitation 0.1 43200 > th dose dependent rect. 7 3
926 331.10 precipitation 0.1 43200 < th dose independent rect. 7 3
927 331.10 precipitation 0.1 43200 < th dose dependent rect. 7 3
941 331.29 temperature 20.0 720 < th dose independent rect. 3 23
943 331.31 temperature 20.0 720 < th dose independent rect. 5 23
945 331.32 radiation 20.0 1440 < th dose independent rect. 17 20
985 331.63 temperature 20.0 43200 > th dose independent rect. 21 1
992 331.66 radiation 20.0 1440 < th dose independent rect. 22 15
993 331.67 radiation 20.0 1440 < th dose independent rect. 6 7
995 331.67 radiation 20.0 1440 < th dose independent rect. 20 17
996 331.69 radiation 20.0 1440 < th dose independent rect. 2 11