Os04g0548000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF862, eukaryotic domain containing protein.
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Os04g0548000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF862, eukaryotic domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44.33 | 0.313 | 10.2 | -2.08 | 0.685 | 0.71 | 0.902 | -0.825 | -0.544 | 8.03 | 10.54 | 3927 | -- | -- |
| 44.61 | 0.311 | 10.1 | -1.92 | 0.697 | 0.769 | 0.901 | -- | -0.5 | 7.91 | 10.51 | 5014 | -- | -- |
| 46.47 | 0.318 | 10.2 | -2.07 | 0.708 | 0.694 | -- | -0.98 | -0.548 | 7.66 | 9.03 | 3740 | -- | -- |
| 46.7 | 0.318 | 10.1 | -1.89 | 0.704 | 0.756 | -- | -- | -0.498 | 7.51 | 10.81 | 4919 | -- | -- |
| 71.07 | 0.393 | 10.2 | -2 | -- | 0.715 | -- | -0.544 | -0.52 | -- | 7.092 | 4333 | -- | -- |
| 54.68 | 0.347 | 10.1 | -1.56 | 0.675 | -- | 0.832 | -- | -0.349 | 7.75 | -- | -- | -- | -- |
| 56.4 | 0.352 | 10.1 | -1.54 | 0.684 | -- | -- | -- | -0.351 | 7.38 | -- | -- | -- | -- |
| 71.26 | 0.393 | 10.1 | -1.9 | -- | 0.774 | -- | -- | -0.507 | -- | 0.3612 | 5710 | -- | -- |
| 88.2 | 0.437 | 9.99 | -- | 0.678 | -0.866 | -- | -- | 0.0948 | 7.32 | 15.1 | 47520 | -- | -- |
| 81.32 | 0.421 | 10.1 | -1.53 | -- | -- | -- | -- | -0.34 | -- | -- | -- | -- | -- |
| 118.95 | 0.51 | 10.1 | -- | 0.67 | -- | -- | -- | -0.18 | 7.53 | -- | -- | -- | -- |
| 97.28 | 0.459 | 10.1 | -- | -- | -0.77 | -- | -- | -0.308 | -- | 35.46 | 46664 | -- | -- |
| 143.01 | 0.558 | 10.1 | -- | -- | -- | -- | -- | -0.17 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.71 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 12 | 19 |
| 17 | 42.00 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 23 | 42.12 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 28 | 42.24 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 19 | 10 |
| 53 | 42.57 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 54 | 42.57 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 8 |
| 58 | 42.60 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 59 | 42.60 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 60 | 42.60 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 5 |
| 68 | 42.64 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 72 | 42.65 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 88 | 42.71 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 8 |
| 97 | 42.77 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 100 | 42.78 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 5 |
| 108 | 42.85 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 15 | 4 |
| 117 | 42.92 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 8 |
| 118 | 42.93 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 123 | 42.95 | temperature | 15.0 | 720 | > th | dose dependent | sin | 12 | NA |
| 125 | 42.96 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 6 |
| 131 | 43.00 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 147 | 43.05 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 17 | 16 |
| 149 | 43.06 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 15 | 4 |
| 166 | 43.12 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 173 | 43.14 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 176 | 43.15 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 4 | 2 |
| 195 | 43.17 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 21 | 9 |
| 207 | 43.22 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 224 | 43.30 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 14 | 19 |
| 234 | 43.33 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 235 | 43.33 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 18 | 10 |
| 244 | 43.36 | temperature | 30.0 | 720 | < th | dose independent | rect. | 16 | 3 |
| 251 | 43.37 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 16 | 4 |
| 254 | 43.37 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 12 |
| 270 | 43.39 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 13 | 3 |
| 271 | 43.40 | temperature | 30.0 | 720 | < th | dose independent | rect. | 15 | 5 |
| 280 | 43.43 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 282 | 43.43 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 12 | 6 |
| 305 | 43.48 | radiation | 1.0 | 14400 | < th | dose independent | sin | 13 | NA |
| 310 | 43.48 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 17 | 14 |
| 323 | 43.49 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 333 | 43.51 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 14 | 14 |
| 334 | 43.51 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 14 | 17 |
| 338 | 43.52 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 16 | 3 |
| 353 | 43.53 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 12 | 3 |
| 364 | 43.54 | humidity | 80.0 | 14400 | > th | dose dependent | sin | 13 | NA |
| 369 | 43.55 | radiation | 1.0 | 14400 | > th | dose independent | sin | 12 | NA |
| 393 | 43.57 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 408 | 43.58 | radiation | 1.0 | 720 | < th | dose independent | rect. | 17 | 2 |
| 430 | 43.60 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 12 | 15 |
| 548 | 43.69 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 584 | 43.71 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 594 | 43.72 | temperature | 30.0 | 720 | < th | dose independent | rect. | 15 | 13 |
| 608 | 43.73 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 7 | 23 |
| 612 | 43.73 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 12 | 12 |
| 615 | 43.74 | radiation | 30.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 641 | 43.75 | temperature | 30.0 | 720 | < th | dose independent | rect. | 7 | 12 |
| 644 | 43.75 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 10 | 20 |
| 719 | 43.80 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 10 | 9 |
| 725 | 43.80 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 10 | 16 |
| 736 | 43.80 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 17 | 3 |
| 749 | 43.81 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 752 | 43.81 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 14 | 11 |
| 758 | 43.82 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 796 | 43.84 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 7 | 12 |
| 814 | 43.84 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 7 | 23 |
| 856 | 43.87 | wind | 5.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 865 | 43.87 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 1 | 21 |
| 876 | 43.88 | radiation | 1.0 | 14400 | < th | dose independent | no | NA | NA |
| 877 | 43.88 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 4 | 15 |
| 974 | 43.90 | temperature | 30.0 | 720 | < th | dose independent | rect. | 24 | 19 |