BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0463400 Os10g0463400|Os10g0463400
(256 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0463400 496 e-141
Os02g0182100 Similar to Two-component response regulator ARR1 123 2e-28
Os06g0183100 Similar to Two-component response regulator ARR14 120 7e-28
Os02g0796500 Similar to Two-component response regulator AR... 120 1e-27
Os06g0647200 CheY-like domain containing protein 111 5e-25
Os03g0224200 Similar to Response regulator 8 80 1e-15
Os05g0412000 Similar to Two-component response regulator ARR14 74 9e-14
Os01g0844900 Homeodomain-like containing protein 74 1e-13
Os01g0971800 Similar to Two-component response regulator AR... 70 1e-12
>Os10g0463400
Length = 256
Score = 496 bits (1277), Expect = e-141, Method: Compositional matrix adjust.
Identities = 235/256 (91%), Positives = 235/256 (91%)
Query: 1 MASSGDTNTVMKYVANGAFDFLLKPVRIEELSNIWQHIFRKQMQDHKNNNMVGNLEKPGH 60
MASSGDTNTVMKYVANGAFDFLLKPVRIEELSNIWQHIFRKQMQDHKNNNMVGNLEKPGH
Sbjct: 1 MASSGDTNTVMKYVANGAFDFLLKPVRIEELSNIWQHIFRKQMQDHKNNNMVGNLEKPGH 60
Query: 61 PPSIXXXXXXXXXXXXXXXXXXXXXPLENEVRDDMVNYNGEITDIRDLGKSRLTWTTQLH 120
PPSI PLENEVRDDMVNYNGEITDIRDLGKSRLTWTTQLH
Sbjct: 61 PPSILAMARATPATTRSTATEASLAPLENEVRDDMVNYNGEITDIRDLGKSRLTWTTQLH 120
Query: 121 RQFIAAVNHLGEDKAVPKKILGIMKVKHLTREQVASHLQVHIKYRMQLKKSIPTTSKHGA 180
RQFIAAVNHLGEDKAVPKKILGIMKVKHLTREQVASHLQVHIKYRMQLKKSIPTTSKHGA
Sbjct: 121 RQFIAAVNHLGEDKAVPKKILGIMKVKHLTREQVASHLQVHIKYRMQLKKSIPTTSKHGA 180
Query: 181 TLSSTALDKTQDHPSRSQYFNQDGCKEIMDYSLPRDDLSSGSECMLEELNDYSSEGFQDF 240
TLSSTALDKTQDHPSRSQYFNQDGCKEIMDYSLPRDDLSSGSECMLEELNDYSSEGFQDF
Sbjct: 181 TLSSTALDKTQDHPSRSQYFNQDGCKEIMDYSLPRDDLSSGSECMLEELNDYSSEGFQDF 240
Query: 241 RWDSDKQEYGPCFWNF 256
RWDSDKQEYGPCFWNF
Sbjct: 241 RWDSDKQEYGPCFWNF 256
>Os02g0182100 Similar to Two-component response regulator ARR1
Length = 626
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 104/185 (56%), Gaps = 7/185 (3%)
Query: 1 MASSGDTNTVMKYVANGAFDFLLKPVRIEELSNIWQHIFRKQMQDHKNNNMVGNLEKPGH 60
++++G+T TVMK + +GA D+LLKPVR+E+L IWQH+ R++ D KN GN + G
Sbjct: 107 LSANGETQTVMKGITHGACDYLLKPVRLEQLRTIWQHVIRRKNCDAKNR---GNDDDAGQ 163
Query: 61 PPSIXXXXXXXXXXXXXXXXXXXXXPLENEVRDDMVNYNGEITDIRDLGKSRLTWTTQLH 120
+ DD + E D K R+ W+ +LH
Sbjct: 164 KAQGMNNEGESIGANRNKRQSRKSRDENGDDGDDSDENSNENGDSSTQKKPRVVWSVELH 223
Query: 121 RQFIAAVNHLGEDKAVPKKILGIMKVKHLTREQVASHLQVHIKYRMQLKKSIPTTSKHGA 180
R+F+AAVN LG +KAVPKKIL +M V+++TRE VASHLQ KYR+ LK+ + T + A
Sbjct: 224 RKFVAAVNQLGIEKAVPKKILDLMNVENITRENVASHLQ---KYRLYLKR-LSTDASRQA 279
Query: 181 TLSST 185
L++
Sbjct: 280 NLAAA 284
>Os06g0183100 Similar to Two-component response regulator ARR14
Length = 696
Score = 120 bits (302), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 109/191 (57%), Gaps = 13/191 (6%)
Query: 1 MASSGDTNTVMKYVANGAFDFLLKPVRIEELSNIWQHIFRKQMQDHKNNNMVGNLE--KP 58
++ +G+T TVMK + +GA D+LLKPVRIEEL NIWQH+ R++ + + NN+ + E KP
Sbjct: 104 LSVNGETKTVMKGITHGACDYLLKPVRIEELRNIWQHVVRRKFGNRERNNLDFSKECNKP 163
Query: 59 -----GHPPSIXXXXXXXXXXXXXXXXXXXXXPLENEVRDDMVNYNGEITDIRDLGKSRL 113
H P ++E D+ N E + + K R+
Sbjct: 164 QSADTDHGPYQPTCGSSDQNGRSSRKRKELHGEDDDEGDDNDYQENDEPSAAK---KPRV 220
Query: 114 TWTTQLHRQFIAAVNHLGEDKAVPKKILGIMKVKHLTREQVASHLQVHIKYRMQLKKSIP 173
W+ +LHR+F+AAVN LG DKAVPK+IL +M V+ LTRE VASHLQ KYR+ LK+
Sbjct: 221 VWSVELHRKFVAAVNQLGIDKAVPKRILELMNVEKLTRENVASHLQ---KYRLYLKRLGA 277
Query: 174 TTSKHGATLSS 184
S+ + +++
Sbjct: 278 VASQQASIVAA 288
>Os02g0796500 Similar to Two-component response regulator ARR11 (Receiver-like
protein 3)
Length = 688
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/174 (41%), Positives = 99/174 (56%), Gaps = 8/174 (4%)
Query: 1 MASSGDTNTVMKYVANGAFDFLLKPVRIEELSNIWQHIFRKQM--QDHKNNNMVGNLEKP 58
++ +G+T TV+K + +GA D+LLKPVRIEEL NIWQH+ R++ +D N + KP
Sbjct: 102 LSVNGETKTVLKGITHGACDYLLKPVRIEELRNIWQHVIRRKFSTRDRANLDFYEECNKP 161
Query: 59 GHPPS--IXXXXXXXXXXXXXXXXXXXXXPLENEVRDDMVNYNGEITDIRDLGKSRLTWT 116
+ S + E + VN +I D K R+ W+
Sbjct: 162 PNADSDHVHGHVTCGSPDQSGRPSKKRKEYCSEEEDEGEVNTQ-DIDDPSAPKKPRVVWS 220
Query: 117 TQLHRQFIAAVNHLGEDKAVPKKILGIMKVKHLTREQVASHLQVHIKYRMQLKK 170
+LHR+F+AAVN LG DKAVPK+IL +M V+ LTRE VASHLQ KYR+ LK+
Sbjct: 221 VELHRKFVAAVNQLGIDKAVPKRILELMNVEKLTRENVASHLQ---KYRLYLKR 271
>Os06g0647200 CheY-like domain containing protein
Length = 663
Score = 111 bits (278), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 100/171 (58%), Gaps = 24/171 (14%)
Query: 2 ASSGDTNTVMKYVANGAFDFLLKPVRIEELSNIWQHIFRKQMQDHKNNNMVGNLEKPGHP 61
+++G+ T+MK V +GA D+L+KPV ++++ NIWQH++RK+ D +N+N G G
Sbjct: 110 SANGELETMMKGVTHGACDYLVKPVSLKDIQNIWQHVWRKRKLDIRNHN--GGYNDGGE- 166
Query: 62 PSIXXXXXXXXXXXXXXXXXXXXXPLENEVRDDMVNYNGEITDIRD--LGKSRLTWTTQL 119
++R+D NY GE + D L + R+ WT +L
Sbjct: 167 ---------------LVGATRTKRKYTRKMRNDGDNY-GENKENMDSTLKRQRVVWTPEL 210
Query: 120 HRQFIAAVNHLGEDKAVPKKILGIMKVKHLTREQVASHLQVHIKYRMQLKK 170
HR F+ AV+ LG D+AVP+KIL +MKV ++TRE +ASHLQ KYR+ LK+
Sbjct: 211 HRDFVIAVHELGVDRAVPRKILRMMKVDYMTRENIASHLQ---KYRLYLKR 258
>Os03g0224200 Similar to Response regulator 8
Length = 691
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/61 (62%), Positives = 47/61 (77%), Gaps = 3/61 (4%)
Query: 110 KSRLTWTTQLHRQFIAAVNHLGEDKAVPKKILGIMKVKHLTREQVASHLQVHIKYRMQLK 169
K R+ W+ +LH+QF+ AVNHLG DKAVPKKIL +M V LTRE VASHLQ K+R+ LK
Sbjct: 202 KPRVVWSVELHQQFVNAVNHLGIDKAVPKKILELMNVPGLTRENVASHLQ---KFRLYLK 258
Query: 170 K 170
+
Sbjct: 259 R 259
>Os05g0412000 Similar to Two-component response regulator ARR14
Length = 331
Score = 73.9 bits (180), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 45/65 (69%), Gaps = 3/65 (4%)
Query: 106 RDLGKSRLTWTTQLHRQFIAAVNHLGEDKAVPKKILGIMKVKHLTREQVASHLQVHIKYR 165
R L + RL WT QLH++F+ AV HLG AVPK I+ +M V LTRE VASHLQ KYR
Sbjct: 106 RTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQ---KYR 162
Query: 166 MQLKK 170
+ LK+
Sbjct: 163 LYLKR 167
>Os01g0844900 Homeodomain-like containing protein
Length = 219
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/62 (56%), Positives = 45/62 (72%), Gaps = 3/62 (4%)
Query: 110 KSRLTWTTQLHRQFIAAVNHLGEDKAVPKKILGIMKVKHLTREQVASHLQVHIKYRMQLK 169
K+R+ WT +LH +F+ AV HLGE AVPK I+ +M V LTRE VASHLQ KYR+ LK
Sbjct: 106 KARMVWTPELHHRFVEAVAHLGEKGAVPKAIVRLMNVDGLTRENVASHLQ---KYRLYLK 162
Query: 170 KS 171
++
Sbjct: 163 RT 164
>Os01g0971800 Similar to Two-component response regulator ARR11 (Receiver-like
protein 3)
Length = 238
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 44/61 (72%), Gaps = 3/61 (4%)
Query: 110 KSRLTWTTQLHRQFIAAVNHLGEDKAVPKKILGIMKVKHLTREQVASHLQVHIKYRMQLK 169
++RL WT QLH++F+ V HLG AVPK I+ +M V+ LTRE VASHLQ KYR+ +K
Sbjct: 118 RARLVWTPQLHKRFVEVVAHLGMKNAVPKTIMQLMNVEGLTRENVASHLQ---KYRLYVK 174
Query: 170 K 170
+
Sbjct: 175 R 175
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.132 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,341,167
Number of extensions: 306511
Number of successful extensions: 736
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 763
Number of HSP's successfully gapped: 10
Length of query: 256
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 157
Effective length of database: 11,866,615
Effective search space: 1863058555
Effective search space used: 1863058555
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)