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Os05g0412000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Two-component response regulator ARR14.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.2 (0.026) R2 : 0.341
β1 : 1.08 (0.0953) R2dD : 0.192 R2D : 0.198
β2 : 0.611 (0.0643) R2dC : 0.131 R2C : 0.122
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.133 (0.0556) R2dN8 : 0.0111 R2N8 : 0.0258
σ : 0.489
deviance : 109.25
__
_____
C
peak time of C : 14.8
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
94.72 0.457 10.2 1.02 0.778 0.596 0.408 -0.881 -0.152 14.3 39.39 20 -- --
96.59 0.458 10.3 1.05 0.76 0.6 0.603 -- -0.158 14.3 40 19 -- --
95.24 0.455 10.3 1.01 0.774 0.624 -- -1.01 -0.153 14.2 39.06 20 -- --
98.35 0.462 10.2 1.05 0.789 0.644 -- -- -0.15 14.2 39.9 19 -- --
126.24 0.523 10.3 1.01 -- 0.501 -- -1.49 -0.196 -- 57.1 9 -- --
106.79 0.484 10.2 1.06 0.609 -- 0.854 -- -0.138 14.9 -- -- -- --
109.25 0.489 10.2 1.08 0.611 -- -- -- -0.133 14.8 -- -- -- --
126.05 0.523 10.3 0.934 -- 0.925 -- -- -0.196 -- 59.41 48 -- --
128.11 0.527 10.2 -- 0.789 0.675 -- -- -0.221 14.1 40 20 -- --
130.9 0.535 10.2 1.05 -- -- -- -- -0.149 -- -- -- -- --
139.93 0.553 10.3 -- 0.59 -- -- -- -0.253 14.8 -- -- -- --
149.01 0.569 10.3 -- -- 1.35 -- -- -0.308 -- 59.9 84 -- --
160.15 0.591 10.3 -- -- -- -- -- -0.266 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 88.38 radiation 40.0 30 < th dose independent rect. 5 21
3 88.51 temperature 20.0 720 > th dose independent rect. 5 1
4 88.91 radiation 40.0 30 < th dose independent rect. 5 19
9 89.69 temperature 20.0 720 > th dose independent rect. 3 3
11 89.93 radiation 40.0 30 < th dose dependent rect. 5 21
15 90.14 radiation 10.0 270 < th dose dependent rect. 5 1
19 90.46 radiation 1.0 720 < th dose independent rect. 16 8
32 90.94 radiation 1.0 720 < th dose independent rect. 9 15
33 90.95 radiation 10.0 1440 < th dose independent rect. 3 2
34 90.95 temperature 10.0 1440 > th dose independent rect. 6 4
37 90.95 atmosphere 995.0 1440 > th dose independent rect. 6 4
38 90.95 atmosphere 1015.0 1440 < th dose independent rect. 6 4
39 90.95 temperature 10.0 1440 > th dose independent rect. 10 20
47 91.12 radiation 30.0 90 < th dose independent rect. 5 6
49 91.21 radiation 40.0 90 < th dose dependent rect. 5 10
50 91.22 humidity 50.0 720 > th dose dependent rect. 19 5
51 91.26 radiation 10.0 1440 < th dose dependent rect. 3 2
55 91.35 radiation 30.0 90 < th dose independent rect. 5 4
56 91.37 radiation 10.0 1440 > th dose independent rect. 11 1
57 91.39 radiation 10.0 270 < th dose independent rect. 5 1
58 91.39 humidity 70.0 90 > th dose independent rect. 5 4
61 91.50 humidity 50.0 10 > th dose dependent rect. 5 21
70 91.61 radiation 20.0 1440 > th dose independent rect. 16 16
71 91.62 radiation 1.0 720 < th dose dependent rect. 9 15
72 91.64 radiation 40.0 90 < th dose dependent rect. 5 8
73 91.66 wind 1.0 90 > th dose independent rect. 4 5
74 91.66 radiation 30.0 30 < th dose independent rect. 5 9
77 91.71 humidity 80.0 270 > th dose dependent rect. 5 1
86 91.82 radiation 1.0 720 < th dose dependent rect. 13 11
91 91.87 humidity 90.0 270 > th dose independent rect. 5 1
104 91.99 temperature 20.0 720 > th dose independent rect. 23 8
107 92.02 humidity 50.0 30 > th dose dependent rect. 5 19
109 92.04 radiation 40.0 1440 < th dose independent rect. 9 1
116 92.10 radiation 40.0 90 < th dose dependent rect. 5 6
120 92.15 humidity 50.0 90 > th dose dependent rect. 5 12
124 92.19 temperature 15.0 270 > th dose dependent rect. 4 4
131 92.25 radiation 40.0 30 < th dose independent rect. 5 15
135 92.26 radiation 1.0 720 < th dose dependent rect. 17 7
137 92.27 temperature 15.0 90 > th dose independent rect. 9 20
141 92.30 radiation 40.0 1440 > th dose dependent rect. 15 20
144 92.33 temperature 25.0 270 < th dose independent rect. 5 1
147 92.36 radiation 40.0 10 < th dose independent rect. 5 7
152 92.38 radiation 40.0 1440 > th dose dependent sin 11 NA
160 92.41 radiation 40.0 1440 > th dose dependent rect. 9 2
161 92.41 radiation 40.0 1440 > th dose dependent rect. 8 4
203 92.49 humidity 50.0 90 > th dose dependent rect. 5 4
228 92.68 radiation 1.0 270 > th dose independent rect. 8 10
232 92.69 humidity 50.0 270 > th dose dependent rect. 19 13
244 92.78 radiation 40.0 1440 < th dose independent rect. 9 3
245 92.78 temperature 30.0 90 < th dose independent rect. 5 4
246 92.78 radiation 40.0 1440 > th dose independent rect. 15 21
260 92.86 atmosphere 995.0 43200 < th dose dependent rect. 13 14
261 92.87 radiation 40.0 1440 > th dose independent rect. 8 4
279 92.88 humidity 70.0 720 > th dose dependent rect. 21 1
280 92.88 humidity 50.0 90 > th dose dependent rect. 5 10
286 92.91 wind 7.0 90 < th dose independent rect. 5 4
288 92.91 temperature 10.0 90 > th dose independent rect. 5 4
291 92.91 atmosphere 995.0 90 > th dose independent rect. 5 4
292 92.91 atmosphere 1015.0 90 < th dose independent rect. 5 4
300 92.93 radiation 40.0 90 < th dose dependent rect. 5 4
331 92.98 precipitation 0.1 90 < th dose independent rect. 5 4
332 92.98 precipitation 0.1 90 < th dose dependent rect. 5 4
338 92.99 atmosphere 995.0 43200 < th dose dependent rect. 13 19
350 93.04 humidity 50.0 90 > th dose dependent rect. 5 6
356 93.05 radiation 1.0 30 > th dose dependent rect. 9 21
368 93.12 radiation 1.0 720 > th dose independent rect. 9 20
394 93.19 radiation 40.0 10 < th dose independent sin 7 NA
396 93.19 atmosphere 995.0 90 > th dose independent rect. 9 20
397 93.19 radiation 1.0 30 > th dose dependent rect. 9 10
410 93.20 precipitation 0.1 90 < th dose independent rect. 9 20
413 93.20 precipitation 0.1 90 < th dose dependent rect. 9 20
430 93.22 radiation 10.0 1440 < th dose dependent rect. 1 4
432 93.23 atmosphere 995.0 43200 < th dose independent rect. 17 18
433 93.23 radiation 40.0 1440 < th dose independent rect. 16 20
435 93.24 radiation 40.0 1440 > th dose independent rect. 9 1
438 93.24 radiation 20.0 1440 > th dose independent rect. 15 19
442 93.26 radiation 10.0 1440 < th dose independent rect. 1 4
443 93.26 radiation 40.0 1440 < th dose independent rect. 6 6
452 93.29 radiation 40.0 1440 > th dose independent sin 11 NA
461 93.31 radiation 40.0 1440 < th dose independent rect. 24 12
463 93.31 radiation 40.0 1440 < th dose independent rect. 20 16
464 93.31 atmosphere 995.0 43200 > th dose independent rect. 17 19
495 93.38 radiation 10.0 1440 < th dose dependent rect. 11 6
503 93.41 atmosphere 995.0 43200 < th dose dependent sin 15 NA
504 93.41 radiation 20.0 1440 < th dose dependent rect. 15 2
543 93.47 humidity 80.0 1440 < th dose dependent rect. 20 16
544 93.48 precipitation 0.1 270 < th dose independent rect. 6 23
548 93.48 precipitation 0.1 270 < th dose dependent rect. 6 23
561 93.49 radiation 40.0 10 < th dose independent rect. 19 23
571 93.53 radiation 20.0 270 < th dose independent rect. 19 13
585 93.60 atmosphere 1010.0 270 < th dose independent rect. 5 1
595 93.62 atmosphere 1005.0 270 > th dose independent rect. 22 5
610 93.67 precipitation 0.1 270 < th dose independent rect. 7 21
612 93.67 precipitation 0.1 270 < th dose dependent rect. 7 21
623 93.70 temperature 15.0 270 > th dose independent rect. 7 21
634 93.75 wind 1.0 14400 > th dose independent rect. 1 1
645 93.78 radiation 10.0 1440 > th dose independent rect. 15 1
655 93.79 humidity 90.0 720 < th dose dependent rect. 16 20
659 93.81 wind 1.0 270 > th dose independent rect. 4 2
663 93.81 wind 9.0 90 < th dose dependent rect. 5 4
667 93.82 humidity 70.0 1440 > th dose independent rect. 19 17
673 93.83 wind 7.0 270 < th dose independent rect. 5 1
675 93.83 temperature 10.0 270 > th dose independent rect. 5 1
678 93.83 humidity 50.0 270 > th dose independent rect. 5 1
681 93.83 atmosphere 995.0 270 > th dose independent rect. 5 1
688 93.83 temperature 10.0 270 > th dose independent rect. 6 23
723 93.89 radiation 1.0 270 < th dose independent rect. 4 14
731 93.91 precipitation 0.1 270 < th dose independent rect. 5 1
734 93.91 precipitation 0.1 270 < th dose dependent rect. 5 1
749 93.92 atmosphere 995.0 43200 < th dose dependent rect. 15 18
773 93.94 radiation 1.0 1440 > th dose dependent rect. 11 1
780 93.96 atmosphere 1015.0 90 < th dose independent rect. 9 20
783 93.97 radiation 20.0 1440 > th dose independent sin 12 NA
785 93.97 wind 1.0 10 > th dose independent rect. 19 14
795 93.99 atmosphere 995.0 43200 < th dose independent rect. 16 21
800 94.01 wind 9.0 90 < th dose independent rect. 9 20
806 94.02 humidity 50.0 90 > th dose dependent rect. 5 15
818 94.06 radiation 40.0 1440 < th dose independent rect. 11 1
821 94.06 humidity 70.0 30 > th dose independent rect. 5 9
832 94.08 wind 9.0 1440 < th dose independent rect. 6 4
848 94.11 wind 1.0 14400 < th dose independent rect. 1 1
869 94.14 radiation 20.0 14400 < th dose independent rect. 3 3
878 94.15 humidity 60.0 90 > th dose independent rect. 4 21
881 94.16 radiation 40.0 1440 > th dose independent rect. 11 1
884 94.16 humidity 70.0 30 > th dose independent rect. 5 12
936 94.24 humidity 60.0 14400 > th dose independent rect. 3 5
938 94.24 radiation 1.0 720 < th dose independent rect. 4 20
963 94.28 humidity 90.0 10 < th dose dependent rect. 9 10
976 94.32 atmosphere 995.0 270 > th dose independent rect. 7 21