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Os01g0971800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Two-component response regulator ARR11 (Receiver-like protein 3).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.4 (0.0397) R2 : 0.954
β1 : -- (--) R2dD : -- R2D : --
β2 : 6.45 (0.102) R2dC : 0.406 R2C : 0.44
β3 : -7.18 (0.102) R2dE : 0.514 R2E : 0.547
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0188 (0.0835) R2dN8 : 3.48e-05 R2N8 : -0.000394
σ : 0.745
deviance : 255.94
__
_____
C
peak time of C : 16.4
E
wheather : temperature
threshold : 2.226
memory length : 268
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 2.83
open length of G : 9.12

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
247.96 0.74 10.4 -0.0555 6.7 -6.83 1.47 1.91 -0.0303 16.8 7.293 245 3.12 8.97
254.64 0.743 10.4 -0.087 6.65 -6.77 1.34 -- -0.0542 16.7 5.461 245 3.13 8.98
251.48 0.739 10.4 -0.118 6.68 -6.81 -- 1.7 -0.0954 16.7 4.707 253 3.07 8.94
258.03 0.748 10.4 -0.151 6.61 -7.01 -- -- -0.0782 16.6 3.203 256 3.07 8.97
911.21 1.41 10.4 0.508 -- -8.69 -- -0.796 0.113 -- -2.54 257 0.521 10.1
582.57 1.13 10.6 -0.502 9.64 -- 0.532 -- -0.294 19.2 -- -- -- --
583.32 1.13 10.6 -0.513 9.64 -- -- -- -0.293 19.2 -- -- -- --
850.12 1.36 10.3 -0.135 -- -8.48 -- -- -0.143 -- -9.228 273 0.0167 10.6
255.94 0.745 10.4 -- 6.45 -7.18 -- -- -0.0188 16.4 2.226 268 2.83 9.12
5491.68 3.46 10.4 -0.693 -- -- -- -- -0.463 -- -- -- -- --
590.24 1.14 10.6 -- 9.64 -- -- -- -0.236 19.2 -- -- -- --
848.69 1.36 10.3 -- -- -8.49 -- -- 0.0018 -- -10.4 277 0.0167 10.6
5504.33 3.46 10.4 -- -- -- -- -- -0.386 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 260.32 temperature 10.0 270 > th dose dependent rect. 3 9
6 299.45 temperature 10.0 90 > th dose dependent rect. 19 18
13 308.61 humidity 50.0 270 > th dose independent rect. 17 18
16 313.63 precipitation 0.1 270 < th dose independent rect. 11 6
17 313.63 precipitation 0.1 270 < th dose dependent rect. 11 6
18 313.89 wind 9.0 270 < th dose independent rect. 17 18
19 314.63 temperature 10.0 270 > th dose independent rect. 11 6
20 314.63 atmosphere 1015.0 270 < th dose independent rect. 11 6
21 314.63 temperature 10.0 270 > th dose independent rect. 17 18
22 315.29 wind 1.0 270 > th dose independent rect. 11 6
23 317.20 wind 9.0 270 < th dose independent rect. 11 6
28 318.27 atmosphere 995.0 270 > th dose independent rect. 17 18
31 320.86 humidity 50.0 270 > th dose independent rect. 16 20
33 321.44 wind 1.0 270 > th dose independent rect. 12 4
36 322.05 wind 9.0 270 < th dose independent rect. 16 20
38 323.35 precipitation 0.1 270 < th dose independent rect. 17 18
39 323.35 precipitation 0.1 270 < th dose dependent rect. 17 18
41 323.84 radiation 1.0 270 > th dose independent rect. 11 6
43 324.05 wind 9.0 270 < th dose independent rect. 12 4
45 324.22 temperature 10.0 270 > th dose independent rect. 12 4
47 324.22 atmosphere 1015.0 270 < th dose independent rect. 12 4
48 324.22 temperature 10.0 270 > th dose independent rect. 16 20
50 324.86 precipitation 0.1 270 < th dose independent rect. 12 4
51 324.86 precipitation 0.1 270 < th dose dependent rect. 12 4
53 326.09 humidity 50.0 90 > th dose independent rect. 19 18
60 329.09 temperature 15.0 90 > th dose independent rect. 19 18
61 329.27 atmosphere 995.0 270 > th dose independent rect. 11 6
62 329.93 temperature 15.0 270 > th dose independent rect. 3 9
66 330.90 atmosphere 995.0 270 > th dose independent rect. 12 4
68 331.60 atmosphere 995.0 270 > th dose independent rect. 16 20
69 331.72 wind 9.0 270 < th dose independent rect. 13 2
70 331.75 temperature 10.0 270 > th dose independent rect. 13 2
72 331.75 atmosphere 1010.0 270 < th dose independent rect. 13 2
74 331.75 temperature 10.0 270 > th dose independent rect. 15 22
76 332.46 wind 9.0 90 < th dose independent rect. 19 18
77 332.62 wind 1.0 270 > th dose independent rect. 13 2
78 332.64 radiation 1.0 270 > th dose independent rect. 12 4
81 333.18 precipitation 0.1 90 < th dose independent rect. 13 6
82 333.18 precipitation 0.1 90 < th dose dependent rect. 13 6
86 333.53 precipitation 0.1 270 < th dose independent rect. 13 2
87 333.53 precipitation 0.1 270 < th dose dependent rect. 13 2
105 334.96 precipitation 0.1 270 < th dose independent rect. 16 20
106 334.96 precipitation 0.1 270 < th dose dependent rect. 16 20
116 335.86 atmosphere 995.0 270 > th dose independent rect. 13 2
129 336.85 atmosphere 995.0 90 > th dose independent rect. 19 18
133 337.93 humidity 90.0 270 < th dose independent rect. 12 4
156 340.25 radiation 1.0 90 > th dose independent rect. 13 16
169 340.91 radiation 1.0 270 > th dose independent rect. 13 2
173 341.39 temperature 15.0 270 > th dose independent rect. 7 14
174 341.55 humidity 50.0 270 > th dose independent rect. 3 9
175 341.58 radiation 20.0 270 < th dose dependent rect. 16 6
188 343.13 radiation 40.0 270 < th dose dependent rect. 21 10
189 343.19 radiation 40.0 10 < th dose independent rect. 12 7
194 343.73 precipitation 0.1 270 < th dose independent rect. 3 9
195 343.73 precipitation 0.1 270 < th dose dependent rect. 3 9
198 343.90 radiation 10.0 270 < th dose independent rect. 16 6
201 344.02 wind 9.0 270 < th dose independent rect. 3 9
204 344.25 precipitation 0.1 90 < th dose independent rect. 19 18
205 344.25 precipitation 0.1 90 < th dose dependent rect. 19 18
206 344.38 radiation 40.0 270 < th dose dependent rect. 16 7
230 346.01 precipitation 0.1 270 < th dose independent rect. 12 15
231 346.01 precipitation 0.1 270 < th dose dependent rect. 12 15
242 346.69 humidity 50.0 270 > th dose independent rect. 13 2
253 347.63 atmosphere 995.0 270 > th dose independent rect. 3 9
254 347.63 atmosphere 1015.0 270 < th dose independent rect. 3 9
255 347.63 temperature 10.0 270 > th dose independent rect. 12 15
268 348.42 atmosphere 995.0 270 > th dose dependent rect. 12 4
281 349.83 temperature 10.0 1440 > th dose independent rect. 14 6
284 349.83 temperature 10.0 1440 > th dose independent rect. 20 18
287 349.83 atmosphere 995.0 1440 > th dose independent rect. 20 18
290 350.22 temperature 10.0 270 > th dose dependent rect. 12 4
295 350.81 wind 9.0 270 < th dose independent rect. 12 15
296 350.92 temperature 10.0 270 > th dose independent rect. 21 10
297 350.92 temperature 30.0 270 < th dose independent rect. 21 10
298 350.92 humidity 50.0 270 > th dose independent rect. 21 10
300 350.92 atmosphere 995.0 270 > th dose independent rect. 21 10
301 350.92 radiation 40.0 270 < th dose independent rect. 21 10
306 351.35 wind 9.0 270 < th dose independent rect. 21 10
308 351.53 radiation 1.0 270 > th dose independent rect. 11 18
310 351.85 humidity 50.0 270 > th dose independent rect. 12 4
327 352.12 humidity 50.0 270 > th dose independent rect. 17 5
334 352.80 temperature 10.0 270 > th dose independent rect. 17 5
338 352.80 temperature 10.0 270 > th dose independent rect. 22 19
344 353.36 wind 9.0 270 < th dose independent rect. 17 5
356 353.90 temperature 10.0 270 > th dose independent rect. 16 7
358 353.90 temperature 10.0 270 > th dose independent rect. 23 17
359 354.02 atmosphere 995.0 270 > th dose dependent rect. 13 2
364 354.05 wind 9.0 270 < th dose independent rect. 7 14
367 354.18 temperature 20.0 270 > th dose independent rect. 6 5
386 355.25 atmosphere 995.0 270 > th dose independent rect. 17 5
388 355.27 wind 9.0 270 < th dose independent rect. 16 7
417 357.25 wind 1.0 270 > th dose independent rect. 17 5
419 357.28 atmosphere 995.0 270 > th dose dependent rect. 11 6
421 357.46 wind 9.0 270 < th dose independent rect. 22 19
430 358.00 precipitation 0.1 270 < th dose independent rect. 21 10
431 358.00 precipitation 0.1 270 < th dose dependent rect. 21 10
432 358.04 atmosphere 1015.0 270 < th dose independent rect. 23 17
434 358.12 precipitation 0.1 270 < th dose independent rect. 22 19
435 358.12 precipitation 0.1 270 < th dose dependent rect. 22 19
441 358.26 wind 9.0 270 < th dose independent rect. 23 17
448 358.81 humidity 50.0 270 > th dose independent rect. 16 7
459 359.72 atmosphere 1015.0 270 < th dose independent rect. 7 14
475 360.76 wind 1.0 270 > th dose independent rect. 16 7
479 360.99 precipitation 0.1 270 < th dose independent rect. 23 17
480 360.99 precipitation 0.1 270 < th dose dependent rect. 23 17
482 361.14 atmosphere 1015.0 270 < th dose independent rect. 17 18
485 361.50 wind 1.0 270 > th dose dependent rect. 12 4
489 361.58 precipitation 0.1 270 < th dose independent rect. 17 5
490 361.58 precipitation 0.1 270 < th dose dependent rect. 17 5
495 361.95 atmosphere 995.0 270 > th dose independent rect. 16 7
500 362.11 temperature 10.0 90 > th dose dependent rect. 13 6
506 362.70 radiation 1.0 270 < th dose independent rect. 22 16
515 363.28 wind 1.0 270 > th dose independent rect. 17 18
518 363.37 atmosphere 995.0 270 > th dose independent rect. 23 17
519 363.49 atmosphere 1015.0 270 < th dose independent rect. 22 19
569 365.97 atmosphere 1015.0 270 < th dose independent rect. 17 5
570 366.01 atmosphere 1015.0 90 < th dose independent rect. 19 18
575 366.43 wind 1.0 270 > th dose independent rect. 16 20
583 366.86 radiation 1.0 270 > th dose independent rect. 17 19
608 367.83 atmosphere 995.0 270 > th dose independent rect. 22 19
619 368.20 precipitation 0.1 270 < th dose independent rect. 16 7
620 368.20 precipitation 0.1 270 < th dose dependent rect. 16 7
633 368.79 temperature 15.0 10 > th dose dependent rect. 8 5
636 368.87 radiation 1.0 270 < th dose dependent rect. 22 16
658 370.01 temperature 30.0 270 < th dose independent rect. 17 5
662 370.26 atmosphere 1015.0 270 < th dose independent rect. 16 20
674 370.70 precipitation 0.1 270 < th dose independent rect. 7 14
675 370.70 precipitation 0.1 270 < th dose dependent rect. 7 14
706 371.97 wind 1.0 270 > th dose dependent rect. 13 2
773 373.91 wind 1.0 90 > th dose dependent rect. 13 6
793 374.34 radiation 1.0 270 > th dose independent rect. 5 7
797 374.47 temperature 30.0 270 < th dose independent rect. 17 18
881 376.65 humidity 90.0 90 < th dose independent rect. 6 7
888 376.99 humidity 90.0 90 < th dose independent rect. 4 9
908 377.97 wind 9.0 270 < th dose dependent rect. 13 2
950 379.32 humidity 50.0 10 > th dose independent rect. 13 6
964 379.66 wind 9.0 270 < th dose independent rect. 18 3
965 379.67 temperature 10.0 270 > th dose independent rect. 18 3
970 379.67 temperature 10.0 270 > th dose independent rect. 21 21
971 379.68 atmosphere 1015.0 270 < th dose independent rect. 22 9
985 380.08 atmosphere 995.0 270 > th dose independent rect. 18 3
994 380.23 atmosphere 1015.0 270 < th dose independent rect. 16 7