Os10g0463400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os10g0463400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 437.08 | 0.982 | 6.1 | 1.39 | 3.08 | 5.96 | 4.66 | -3.73 | 2.28 | 5.12 | 24.19 | 1081 | 15.8 | -- |
| 441.74 | 0.979 | 5.99 | 2.26 | 3.08 | 5.67 | 4.6 | -- | 2.43 | 5.12 | 23.75 | 1089 | 15.9 | -- |
| 488.26 | 1.03 | 6.09 | 1.55 | 2.98 | 5.94 | -- | -2.79 | 2.28 | 5.12 | 23.92 | 1102 | 15.6 | -- |
| 492.34 | 1.03 | 6.03 | 2.25 | 2.94 | 5.77 | -- | -- | 2.4 | 5.05 | 23.7 | 1102 | 15.5 | -- |
| 660.52 | 1.2 | 6.12 | 2.62 | -- | 6.9 | -- | 1.76 | 2.16 | -- | 20.84 | 971 | 9.85 | -- |
| 1398.62 | 1.75 | 5.87 | 3.98 | 3.6 | -- | 4.67 | -- | 3.16 | 3.46 | -- | -- | -- | -- |
| 1466.38 | 1.79 | 5.89 | 3.9 | 3.61 | -- | -- | -- | 3.13 | 3.38 | -- | -- | -- | -- |
| 646.43 | 1.18 | 6.15 | 1.87 | -- | 8.28 | -- | -- | 2.07 | -- | 9.882 | 1154 | 12.1 | -- |
| 609.45 | 1.15 | 6.11 | -- | 2.8 | 6.23 | -- | -- | 2.03 | 5.15 | 23.14 | 1129 | 15.4 | -- |
| 2200.81 | 2.19 | 5.89 | 4.05 | -- | -- | -- | -- | 3.23 | -- | -- | -- | -- | -- |
| 1866.35 | 2.02 | 5.98 | -- | 3.69 | -- | -- | -- | 2.7 | 3.38 | -- | -- | -- | -- |
| 726.85 | 1.26 | 6.2 | -- | -- | 9.01 | -- | -- | 1.81 | -- | 7.011 | 1216 | 12.7 | -- |
| 2633.14 | 2.4 | 5.99 | -- | -- | -- | -- | -- | 2.78 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 510.33 | temperature | 20 | 720 | > th | dose dependent | rect. | 10 | 14 |
| 11 | 521.21 | temperature | 25 | 1440 | > th | dose dependent | rect. | 4 | 14 |
| 21 | 522.24 | temperature | 20 | 720 | > th | dose dependent | rect. | 10 | 18 |
| 22 | 522.25 | temperature | 20 | 720 | > th | dose dependent | sin | 19 | NA |
| 35 | 523.82 | temperature | 25 | 1440 | > th | dose dependent | sin | 1 | NA |
| 46 | 524.45 | temperature | 25 | 1440 | > th | dose dependent | rect. | 9 | 9 |
| 145 | 531.05 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 5 |
| 232 | 536.01 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 249 | 537.07 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 23 |
| 382 | 546.71 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |