BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0158700 Os10g0158700|AK106884
(403 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0158700 Conserved hypothetical protein 712 0.0
Os07g0120400 Cyclin-like F-box domain containing protein 115 6e-26
Os07g0421000 Cyclin-like F-box domain containing protein 107 2e-23
Os07g0123000 Cyclin-like F-box domain containing protein 102 6e-22
Os07g0120500 Protein of unknown function DUF538 family protein 95 9e-20
Os08g0299900 Cyclin-like F-box domain containing protein 89 7e-18
Os10g0145200 Cyclin-like F-box domain containing protein 88 1e-17
Os07g0122900 Cyclin-like F-box domain containing protein 84 2e-16
Os07g0140500 73 5e-13
Os08g0299700 72 6e-13
Os11g0583300 70 3e-12
>Os10g0158700 Conserved hypothetical protein
Length = 403
Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/403 (88%), Positives = 356/403 (88%)
Query: 1 TTASHFQRRAALFPLRRHHAVFASSGSFHRHGGDQCSSSGGAHQXXXXXXXXXXXXXXXX 60
TTASHFQRRAALFPLRRHHAVFASSGSFHRHGGDQCSSSGGAHQ
Sbjct: 1 TTASHFQRRAALFPLRRHHAVFASSGSFHRHGGDQCSSSGGAHQRRLPPDPAPPPADRPK 60
Query: 61 XXYRFAAVCRTWRSLLTDPAFLRRYREFHGLPHLIGYVHDGADGRDLVVARFVTTADTTF 120
YRFAAVCRTWRSLLTDPAFLRRYREFHGLPHLIGYVHDGADGRDLVVARFVTTADTTF
Sbjct: 61 LLYRFAAVCRTWRSLLTDPAFLRRYREFHGLPHLIGYVHDGADGRDLVVARFVTTADTTF 120
Query: 121 RPRVPEKGVDLHVLDSRHGRVIFRRIGKGWLDESSLIIWDPVADHHQEVPLPEAFAQEEF 180
RPRVPEKGVDLHVLDSRHGRVIFRRIGKGWLDESSLIIWDPVADHHQEVPLPEAFAQEEF
Sbjct: 121 RPRVPEKGVDLHVLDSRHGRVIFRRIGKGWLDESSLIIWDPVADHHQEVPLPEAFAQEEF 180
Query: 181 NLTATVLCDALGCDHLDCHXXXXXXXXXXXXDEEGASATSAFNYTXXXXXXXXXXXXXXX 240
NLTATVLCDALGCDHLDCH DEEGASATSAFNYT
Sbjct: 181 NLTATVLCDALGCDHLDCHGGPFRVVFVGVRDEEGASATSAFNYTSSSGSWTASPAAAAA 240
Query: 241 XXDEDDWGFRMPAPSILVGGTTLYFRSPGRILRYWFGDEMEHLSYVDIPPFITQETRGTV 300
DEDDWGFRMPAPSILVGGTTLYFRSPGRILRYWFGDEMEHLSYVDIPPFITQETRGTV
Sbjct: 241 VADEDDWGFRMPAPSILVGGTTLYFRSPGRILRYWFGDEMEHLSYVDIPPFITQETRGTV 300
Query: 301 LMPAADGRLSFAAMYGDMTISFWETEVSADGAVDWVHTQNALVSIPLPGVLIGAAASLLF 360
LMPAADGRLSFAAMYGDMTISFWETEVSADGAVDWVHTQNALVSIPLPGVLIGAAASLLF
Sbjct: 301 LMPAADGRLSFAAMYGDMTISFWETEVSADGAVDWVHTQNALVSIPLPGVLIGAAASLLF 360
Query: 361 VRTEDGGIVSVQVGNGRFQMLPQPAPQRQQISALIPFMSFCTP 403
VRTEDGGIVSVQVGNGRFQMLPQPAPQRQQISALIPFMSFCTP
Sbjct: 361 VRTEDGGIVSVQVGNGRFQMLPQPAPQRQQISALIPFMSFCTP 403
>Os07g0120400 Cyclin-like F-box domain containing protein
Length = 368
Score = 115 bits (288), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 103/356 (28%), Positives = 159/356 (44%), Gaps = 48/356 (13%)
Query: 64 RFAAVCRTWRSLLTDPAFLRRYREFHGLPHLIGYVHD-GADGRDLVVARFV-TTADTTFR 121
R + VC+ WR LLTDPAFLRRYR FH P ++G++H+ + RFV TT+ + F
Sbjct: 30 RASLVCKRWRQLLTDPAFLRRYRAFHRTPPMLGFIHNVDHSSNSSYIPRFVATTSPSPFY 89
Query: 122 PRVPEKGVDLHV----LDSRHGRVIFRRIGKGWLDESSLIIWDPVADHHQEVPLPEAFAQ 177
P P ++ LD RHGR++ + + L++WDP H+ P P
Sbjct: 90 PDFPPPSIEFPTYWWALDCRHGRLLLQL-----FNPIDLMVWDPTTGDHRIFPQPPYL-- 142
Query: 178 EEFNLTATVLCDALGCDHLDCHXXXXXXXXXXXXDEEGASATSAFNYTXXXXXXXXXXXX 237
+F T VLC GC H+DCH +++ + A + T
Sbjct: 143 -DFYCTGAVLCATRGCRHVDCHGGPYLVVFVGTGEDDHSWACVYSSETGEWSSQASIAF- 200
Query: 238 XXXXXDEDDWGFRMPAPSILVGGTTLYFRSP--GRILRYWFGDEMEHLSYVDIPPFITQE 295
D + +P L+ TLYFR RIL Y G LS +D PP + E
Sbjct: 201 -------DSYVEMLPG---LLVQDTLYFRCERGKRILGYDIG--RHELSEIDPPP-LGHE 247
Query: 296 TRGTVLMPAADGRLSFAAMYGDMTISFWETEVSADGAVDWVHTQ-------NALVSIPLP 348
+LM + G L FA + D +I W V DG +W + N + + L
Sbjct: 248 V--GILMESGYGGLGFATV-EDCSILLWSRYVGDDGIEEWKKSWVIGLDFLNPVGNPSLS 304
Query: 349 GVLIGAAASL--LFVRTEDGGIVSVQVGNGRFQMLPQPAPQRQQISALIPFMSFCT 402
L G A + +F+ +E G+ ++++ +G+ + L + + ++P+MSF T
Sbjct: 305 WELAGFAEGVHTIFISSEI-GVFTIELKSGQVKKLCE-----EGYYTVVPYMSFYT 354
>Os07g0421000 Cyclin-like F-box domain containing protein
Length = 378
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 103/367 (28%), Positives = 153/367 (41%), Gaps = 55/367 (14%)
Query: 63 YRFAAVCRTWRSLLTDPAFLRRYREFHGLPHLIGYVH-----DGADGRDLVVARFVTTAD 117
+R + VC+ W + DP FLRRYR FHG P L+G +H DG L A
Sbjct: 29 FRASLVCKAWLRAICDPVFLRRYRAFHGSPPLLGLLHRLRVIDGDPAPRL--------AR 80
Query: 118 TTFRPRVPEKGVDLHVLDSRHGRVIFRRIGKGWLDESSLIIWDPVADHHQEVPLPEAFAQ 177
TT P P+ L LD RHGRV+ G LI+WDPV LPE+
Sbjct: 81 TTAAPLSPDPAF-LRALDCRHGRVLLHASNLG------LIVWDPVTGEQHR--LPES-GI 130
Query: 178 EEFNLTATVLCDALGCDHLDCHXXXXXXXXXXXXDEEGASATSAFNYTXXXXXXXXXXXX 237
TA V C GCDHLDCH D++ S ++ +
Sbjct: 131 PWLIYTAAVFCAVGGCDHLDCHGGPFRVVFVATDDDDELVKGSVYS-SETGVWSTPATLD 189
Query: 238 XXXXXDEDDWG--------FRMP---APSILVGGTTLYF--RSPGRILRYWFGDEMEHLS 284
E+ W +R P + G +YF R+ I+ Y +G LS
Sbjct: 190 DGYQSWEERWQAARSRGEYYRTPYVHPKRCALVGDEIYFTLRNGNTIIEYNWGK--NRLS 247
Query: 285 YVDIPPFITQETRGTVLMPAADGRLSFAAMYGDMTISFWETEVSADGAVDWVHTQNALVS 344
D P T + L +G L FA + G +++ W +V+ GA +WV + +
Sbjct: 248 MFDPP---TSDLYYIALTVMENGSLGFAGIEGS-SLNVWSRKVNPQGAAEWVLCRIIELE 303
Query: 345 IPLPGV-------LIGAAASLLFVRTEDG-GIVSVQVGNGRFQMLPQPAPQRQQISALIP 396
+P V ++G+A L + G G+ ++++ + R + L +P +++P
Sbjct: 304 KIIPVVDLSDEACVVGSAEGLGVIFVSTGVGLFTIELKSRRVKKLEEPG----VYFSVLP 359
Query: 397 FMSFCTP 403
+MSF TP
Sbjct: 360 YMSFYTP 366
>Os07g0123000 Cyclin-like F-box domain containing protein
Length = 414
Score = 102 bits (253), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 106/369 (28%), Positives = 158/369 (42%), Gaps = 61/369 (16%)
Query: 64 RFAAVCRTWRSLLTDPAFLRRYREFHGLPHLIGYVHDGADGRDLVVARFVTTADTTFRPR 123
R +AVC+ WR LLTD AFLRRYR+FHG P L+G++H+ A G + R+V + P
Sbjct: 38 RASAVCKPWRRLLTDQAFLRRYRDFHGAPPLLGFLHNVAGGGE---DRYVPFTASPVSP- 93
Query: 124 VPEKGVDLHV-LDSRHGRVIFRRIGKGWLDE----SSLIIWDPVADHHQEVPLPEAFAQE 178
P+ V LD RHGR + LDE + +W P+A + + P
Sbjct: 94 -PDIACPCWVALDCRHGRAL--------LDEFPFSADFTVWHPMAGRRRRL--PRPDLPY 142
Query: 179 EFNLTATVLCDALGCDHLDCHXXXXXXXXXXXXDEEG-------ASATSAFNYTXXXXXX 231
+ A VLC A+GC+HLDC DE A+ S+ + +
Sbjct: 143 FMSYAAAVLCSAVGCNHLDCRGGGPFLVVVVGIDEPEQQNSRPWATVYSSDSDSWSPTTS 202
Query: 232 XXXXXXXXXXXDEDDWGFRMPAPSILVGGTTLYFRSPGR-ILRYWFGDEMEHLSYVDIPP 290
D D P+ LVG + + G I++Y G+ LS + PP
Sbjct: 203 DYLNLTLTPNCDVDR------KPAALVGDALHFALAEGSGIIKYNMGE--CSLSRIH-PP 253
Query: 291 FITQETRGTVLMPAADGRLSFAAMYGDMTISFWETEVSADGAVDWVHTQNALVSIPLPGV 350
+ + G V+M L + G + +S W ++VS DG V W + + LP +
Sbjct: 254 VVYKG--GIVVMAMGGNLLGLGGIEGSI-LSMWSSDVSLDGGVRWEKNRVIKLESLLPSI 310
Query: 351 LIGAA----------------ASLLFVRTEDGGIVSVQVGNGRFQMLPQPAPQRQQISAL 394
A A ++FVRT D GI +++ + M + +R A+
Sbjct: 311 DCVEAVACELAQPAPIGFVDGADIVFVRT-DAGIFMIELKS----MCVRKVCERGYFKAV 365
Query: 395 IPFMSFCTP 403
P+ SFCTP
Sbjct: 366 FPYTSFCTP 374
>Os07g0120500 Protein of unknown function DUF538 family protein
Length = 516
Score = 95.1 bits (235), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 71/135 (52%), Gaps = 12/135 (8%)
Query: 68 VCRTWRSLLTDPAFLRRYREFHGLPHLIGYVHDGADGRDLV--VARFV-TTADTTFRPRV 124
VC+ WR +LTDPAFLRRYR FH P ++G++H+ DG + V RFV TTA + F P
Sbjct: 33 VCKPWRRILTDPAFLRRYRAFHRTPPVLGFLHN-VDGNKAISSVPRFVPTTAASPFSPPA 91
Query: 125 PEKGVDLHVLDSRHGRVIFRRIGKGWLDESSLIIWDPVADHHQEVPLPEAFAQEEFNLTA 184
+ LD RHGRV+ + L++WDP+ PLP T
Sbjct: 92 IDPPNWWWALDCRHGRVL-----SHLFNPMELMVWDPITGDQHRFPLP---PHPHAYCTG 143
Query: 185 TVLCDALGCDHLDCH 199
VLC A C HLDCH
Sbjct: 144 AVLCAASDCHHLDCH 158
>Os08g0299900 Cyclin-like F-box domain containing protein
Length = 374
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 90/362 (24%), Positives = 142/362 (39%), Gaps = 60/362 (16%)
Query: 63 YRFAAVCRTWRSLLTDPAFLRRYREFHGLPHLIGYVHDGADGRDLVVARFVTTADTTFRP 122
+R A VC++W + + FLRR + G P R + D TFR
Sbjct: 36 FRAALVCKSWLRAICEHGFLRRLKVMQGDPA----------ARLARTTAVPLSPDPTFR- 84
Query: 123 RVPEKGVDLHVLDSRHGRVIFRRIGKGWLDESSLIIWDPVADHHQEVPLPEAFAQEEFNL 182
LD RHGR + W LI+WDPV VP P
Sbjct: 85 ---------RALDCRHGRALLHASDDDWY----LIVWDPVTGERHRVPEP---GIPWLIY 128
Query: 183 TATVLCDALGCDHLDCHXXXXXXXXXXXXDEEG-------ASATSAFNYTXXXXXXXXXX 235
+A V C A GCDHLDCH D++ +S T A+N T
Sbjct: 129 SAAVFCAASGCDHLDCHGGPFRVVFIATDDDDELVKASVYSSETCAWNKTVILADGYQTW 188
Query: 236 XXXXXXXDEDDWGFRMPAPSILVG---GTTLYF--RSPGRILRY-WFGDEMEHLSYVDIP 289
+ +R P G G +YF R+ I++Y W + LS +D P
Sbjct: 189 QERLQAITRGE-SYRTPYVQPRRGALVGDEIYFTLRNENAIIKYNWAAN---CLSKIDPP 244
Query: 290 PFITQETRGTVLMPAADGRLSFAAMYGDMTISFWETEVSADGAVDWVHTQNALVSIPLP- 348
++ LM +G L +A + G ++ W S++GA +WV + +P
Sbjct: 245 ---IRDVYDISLMEMENGSLGYACIQGS-SLYVWSRNASSEGAAEWVQCWVIELEQMVPV 300
Query: 349 ------GVLIGAAASLLFVRTEDG-GIVSVQVGNGRFQMLPQPAPQRQQISALIPFMSFC 401
++G+A + + G G+ ++++ + R + + +P S+++P+MSF
Sbjct: 301 ANRGDEAFVVGSAEGVGVIFMSTGVGLFTIELKSRRVKKVEEPG----VYSSVLPYMSFY 356
Query: 402 TP 403
TP
Sbjct: 357 TP 358
>Os10g0145200 Cyclin-like F-box domain containing protein
Length = 378
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 83/332 (25%), Positives = 126/332 (37%), Gaps = 40/332 (12%)
Query: 64 RFAAVCRTWRSLLTDPAFLRRYREFHGLPHLIGYVHDGADGRDLVVARFV---TTADTTF 120
R + VC WR L DP FLRR R FH P ++G+ H+ D V A V A+
Sbjct: 38 RASLVCNRWRRLARDPGFLRRLRAFHRTPPVLGFFHNSPDLPRFVPAEGVPGRVAAEAAS 97
Query: 121 RPRVPEKGVDLHVLDSRHGRVIFRRIGKGWLDESSLIIWDPVADHHQEVPLPEAFAQEEF 180
R + G+ +D RHGR + R + W + L++WDP+ + + + +
Sbjct: 98 LRRDGDDGM-WWCVDCRHGRALLR--SRDW---AELLVWDPMTGERRCITVSSQIQEGAL 151
Query: 181 NLTATVLCDALGCDHLDCHXXXXXXXXXXXXDEEGASATSAFNYTXXXXXXXXXXXXXXX 240
+L A V C A G DCH + + +
Sbjct: 152 DLNAAVFCAASGGGDQDCHSSPFHVVVVFTTGQCHGRVFACVYSSGI------------- 198
Query: 241 XXDEDDWG--FRMPA---------PSILVGGTTLYFRSPGRILRYWFGDEMEHLSYVDIP 289
D WG P P +LVG + RIL + FG++ L+ +D P
Sbjct: 199 ----DAWGDPISTPVTSPCELYEEPPVLVGEALYWLLDGSRILEFEFGNQCLCLALIDHP 254
Query: 290 -PFITQETRGTVLMPAADGRLSFAAMYGDMTISFWETEVSADGAVDWVHTQNALVS--IP 346
R L+ D + A D ++ W EV+ DGA W+ + + +P
Sbjct: 255 VENHAILKRNIRLVRMEDDDVLGLAFVKDFSLHLWAREVADDGASQWIPRRAIELDMILP 314
Query: 347 LPGVLIGAAASLLFVRTEDGGIVSVQVGNGRF 378
L G A + EDG +V ++ G F
Sbjct: 315 LEGYRCRAMPIWICGFAEDGDVVFIRTVAGVF 346
>Os07g0122900 Cyclin-like F-box domain containing protein
Length = 386
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 100/353 (28%), Positives = 141/353 (39%), Gaps = 39/353 (11%)
Query: 64 RFAAVCRTWRSLLTDPAFL--RRYREFHGLPHLIGYVHDGADG---RDLVVARFVTTADT 118
R +AVC+ WR LL+DP FL R P L+G++H +D R A+FV T T
Sbjct: 28 RASAVCKPWRRLLSDPVFLRRHRAFHRRRAPPLLGFIHHVSDEPARRVPSFAQFVPT--T 85
Query: 119 TFRPRVPEKGVDLHVLDSRHGRVIFRRIGKGWLDESSLIIWDPVADHHQEVPLPEAFAQE 178
FRP E + LD RHGR +F+ L IWDP+ + E +
Sbjct: 86 AFRPAELEHK-NCWPLDCRHGRALFQS------SNVELTIWDPMTGDVRRQ--REPYGTL 136
Query: 179 EFNLTATVLCDALGCDHLDCH-XXXXXXXXXXXXDEEGASATSAFNYTXXXXXXXXXXXX 237
TA VLC GCDH DCH D++G SA +Y+
Sbjct: 137 CTFATAAVLCAVPGCDHHDCHGGPFVLVFVGNDEDDDGEEIASASSYSSETGTWTAASTV 196
Query: 238 XXXXXDEDDWGFRMPAPSILVGGTTLYFRSPGR-ILRYWFGDEMEHLSYVDIPPFITQET 296
DD PS+L G + G+ ILRY ++ L I P +
Sbjct: 197 H-----HDDSLELESKPSVLAGDAVHFLTYFGKAILRY----DLTKLELSVILPPVAYGD 247
Query: 297 RGTVLMPAADGRLSFAAMYGDMTISFWETEVSADGAVDWVHTQNALVSIPLPGVLIGAAA 356
+LM A DG L A G+ +I W V+ G WV + LP
Sbjct: 248 GDALLMTAEDGELGLALFDGEASIHLW-ARVAGAG---WVRRNVIDLYAVLP--FFDPVH 301
Query: 357 SLLFVRTEDG-GIVSVQVGNGRFQMLPQPAP-----QRQQISALIPFMSFCTP 403
SL V +G I+ + +G ++M + ++ + + P+MSF P
Sbjct: 302 SLSLVGFAEGTDIIFLHTIHGDYRMELKSLQISKLWEKDRCFNIFPYMSFFVP 354
>Os07g0140500
Length = 405
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 76/145 (52%), Gaps = 15/145 (10%)
Query: 64 RFAAVCRTWRSLLTDPAFLRRYREFHGLPHLIGY-VHDGADGRDLVVARFVTTADTTFRP 122
R VC+ W ++L DP F+R R+FH P ++GY +++ G+ + +ARFV TTFR
Sbjct: 207 RLQLVCKQWHAILGDPCFIRLLRKFHDPPPMLGYFINEDEPGKPMEIARFVHMT-TTFRA 265
Query: 123 RVPEKGVDLHVLDSRHGRVIFR-RIGKGWLDESSLIIWDPVADHHQEVP-----LPEAFA 176
P+ +DSRHG V+F R+ +E ++WDP+ + +E P F
Sbjct: 266 S-PDIYDLASAVDSRHGLVLFYVRVCSD--EEERFVVWDPMVEEEEEEEQWIDGFP--FP 320
Query: 177 QEEFNLTATVLCDALGC--DHLDCH 199
E TA V+C L C DHL CH
Sbjct: 321 VETQYWTAAVMCGLLECHNDHLHCH 345
>Os08g0299700
Length = 1103
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 59/132 (44%), Gaps = 13/132 (9%)
Query: 63 YRFAAVCRTWRSLLTDPAFLRRYREFHGLPHLIGYVHDGADGRDLVVARFVT-TADTTFR 121
+R A VC+ W + DP FLRRYR FHG P L+G +H R ++ V A TT
Sbjct: 29 FRAALVCKEWLRAICDPGFLRRYRAFHGSPPLLGLLH----RRQVLQGDPVRHLARTTAV 84
Query: 122 PRVPEKGVDLHVLDSRHGRVIFRRIGKGWLDESSLIIWDPVADHHQEVPLPEAFAQEEFN 181
P P+ LD HGR + GW LI+WDPV VP P
Sbjct: 85 PLFPDPTF-RRALDCHHGRALLHASDDGWY----LIVWDPVTGEQHRVPEP---GIPWLM 136
Query: 182 LTATVLCDALGC 193
TA V C GC
Sbjct: 137 YTAAVFCAVSGC 148
>Os11g0583300
Length = 398
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 104/364 (28%), Positives = 151/364 (41%), Gaps = 41/364 (11%)
Query: 64 RFAAVCRTWRSLLT-DPAFLRRYREFHGLPH----LIGYVHDGADGRDLVVARFVTTADT 118
R + VC+ WR LL+ DP FLRR+RE H L+G++ + G D VA F T+
Sbjct: 42 RCSLVCKPWRRLLSSDPVFLRRHRELHLRRRTPRPLLGFLFNQL-GEDPGVAWFAPTSSL 100
Query: 119 TFRPRVPEKGVDLHVLDSRHGRVIFRRIGKGWLDESSLIIWDPVADHHQEVPLPEAFAQE 178
P D + LD+RHG V+F + E L++WDP+ + P E
Sbjct: 101 RRLPH--PHHCDWYALDARHGLVLFSTMLSRDAAEHELVVWDPMTGRRWRLDFPGYL--E 156
Query: 179 EFNLTATVLCDALGCDHLDCHXXXXXXXXXXXXDEEGASATSAFNYTXXXXXXXXXXXXX 238
+FN +A+VLC A GCDH CH TSA Y+
Sbjct: 157 DFNWSASVLCAADGCDHRHCHGAPFLVAVVSTGRY---CNTSAAIYSSETGAWGDAIALE 213
Query: 239 XXXXDEDDWGFRMPAPSILVGGTTLYFRSPGRILRYWFGDEMEH-LSYVDIPPFITQETR 297
D DD ++ P + V G +YF R + D H L+ D P
Sbjct: 214 REHPDPDD-AVKVGKPGVQV-GNAIYFPC-VRSAQILECDMSGHTLAMFDSPAAGRGWPD 270
Query: 298 GTVLMPAAD---GRLSFAAMYGDMTISFWETEVSADGAVDWVHTQNALVSIPLPGVLI-- 352
+LM A G L FA + M + W E + DGA+ W + + PL VLI
Sbjct: 271 NGLLMTAESGGGGGLGFAFVRRSM-LHLWSREPTGDGAMAWSPLRGINLE-PLLTVLIRR 328
Query: 353 ------------GAAASLLFVRTE-DGGIVSVQVGNGRFQMLPQPAPQRQQISALIPFMS 399
G A + + E DG + +++V + R + + +R+ I + P+ S
Sbjct: 329 PPEHHSVTPNLVGFADGVGVIFAEIDGDVFTIEVSSRRGKKV----YRREDIHTIFPYTS 384
Query: 400 FCTP 403
F TP
Sbjct: 385 FYTP 388
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.139 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,017,586
Number of extensions: 593648
Number of successful extensions: 1793
Number of sequences better than 1.0e-10: 15
Number of HSP's gapped: 1777
Number of HSP's successfully gapped: 15
Length of query: 403
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 300
Effective length of database: 11,657,759
Effective search space: 3497327700
Effective search space used: 3497327700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 157 (65.1 bits)