Os07g0120400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os07g0120400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60.01 | 0.364 | 8.25 | 2.15 | 0.704 | -1.24 | 0.286 | 1.94 | 0.706 | 1.97 | 25.47 | 1392 | -- | -- |
| 61.24 | 0.364 | 8.32 | 1.61 | 0.739 | -1.06 | 0.378 | -- | 0.558 | 1.95 | 25.79 | 1330 | -- | -- |
| 60.26 | 0.362 | 8.25 | 2.17 | 0.694 | -1.23 | -- | 2.08 | 0.689 | 1.94 | 25.78 | 1396 | -- | -- |
| 61.71 | 0.366 | 8.33 | 1.6 | 0.704 | -1.02 | -- | -- | 0.551 | 1.98 | 25.81 | 1395 | -- | -- |
| 81.05 | 0.419 | 8.24 | 2.28 | -- | -1.46 | -- | 2.94 | 0.69 | -- | 26.22 | 1693 | -- | -- |
| 108.21 | 0.488 | 8.34 | 1.25 | 0.587 | -- | 0.139 | -- | 0.471 | 1.95 | -- | -- | -- | -- |
| 108.28 | 0.487 | 8.34 | 1.25 | 0.587 | -- | -- | -- | 0.47 | 1.95 | -- | -- | -- | -- |
| 83.52 | 0.426 | 8.32 | 1.62 | -- | -1.15 | -- | -- | 0.567 | -- | 25.8 | 1699 | -- | -- |
| 122.83 | 0.516 | 8.39 | -- | 0.746 | -0.721 | -- | -- | 0.252 | 1.9 | 28 | 1257 | -- | -- |
| 129.05 | 0.531 | 8.34 | 1.27 | -- | -- | -- | -- | 0.484 | -- | -- | -- | -- | -- |
| 149.18 | 0.571 | 8.37 | -- | 0.61 | -- | -- | -- | 0.331 | 2 | -- | -- | -- | -- |
| 143.57 | 0.56 | 8.36 | -- | -- | -1.11 | -- | -- | 0.369 | -- | 25.8 | 1699 | -- | -- |
| 171.59 | 0.611 | 8.37 | -- | -- | -- | -- | -- | 0.343 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.79 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 3 | 58.91 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 6 |
| 17 | 59.35 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 9 |
| 29 | 59.48 | temperature | 25 | 1440 | > th | dose dependent | sin | 19 | NA |
| 108 | 60.04 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 20 |
| 129 | 60.16 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 21 |
| 223 | 60.54 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 227 | 60.55 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 261 | 60.86 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 380 | 64.41 | radiation | 40 | 1440 | < th | dose dependent | rect. | 17 | 10 |
| 382 | 64.51 | radiation | 40 | 1440 | < th | dose dependent | rect. | 17 | 8 |
| 388 | 64.55 | radiation | 20 | 1440 | < th | dose dependent | rect. | 17 | 13 |
| 399 | 64.73 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 11 |
| 404 | 64.75 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 408 | 64.77 | radiation | 1 | 1440 | > th | dose dependent | rect. | 17 | 13 |
| 418 | 64.82 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 20 |
| 419 | 64.84 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 5 |
| 461 | 65.04 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 20 |
| 462 | 65.05 | radiation | 1 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 471 | 65.11 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 7 |
| 472 | 65.11 | radiation | 20 | 1440 | < th | dose dependent | rect. | 17 | 3 |
| 497 | 65.25 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 3 |
| 503 | 65.30 | temperature | 30 | 1440 | < th | dose independent | sin | 18 | NA |
| 508 | 65.33 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 513 | 65.35 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 13 |
| 516 | 65.36 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 11 |
| 559 | 65.46 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 14 |
| 574 | 65.49 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 10 |
| 593 | 65.51 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 22 |
| 623 | 65.57 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 20 |
| 625 | 65.58 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 657 | 65.61 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 683 | 65.62 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 22 |
| 686 | 65.62 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 723 | 65.66 | temperature | 30 | 1440 | > th | dose independent | sin | 16 | NA |
| 744 | 65.77 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 761 | 65.80 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 7 |
| 766 | 65.84 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 773 | 65.90 | humidity | 70 | 14400 | < th | dose independent | rect. | 17 | 14 |
| 776 | 65.93 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 802 | 65.99 | radiation | 30 | 1440 | < th | dose dependent | rect. | 16 | 16 |
| 804 | 66.00 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 839 | 66.02 | humidity | 70 | 14400 | < th | dose independent | rect. | 17 | 5 |
| 893 | 66.09 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |