Os07g0122900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os07g0122900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 107.25 | 0.487 | 6.37 | 1.33 | 0.339 | -0.678 | 0.185 | 0.89 | 0.557 | 18.2 | 20.46 | 12 | -- | -- |
| 111.14 | 0.491 | 6.35 | 1.5 | 0.332 | -0.735 | 0.0131 | -- | 0.591 | 18.1 | 20.51 | 25 | -- | -- |
| 107.25 | 0.482 | 6.37 | 1.34 | 0.334 | -0.679 | -- | 0.861 | 0.558 | 18 | 20.48 | 25 | -- | -- |
| 111.11 | 0.491 | 6.35 | 1.49 | 0.326 | -0.729 | -- | -- | 0.592 | 18.1 | 20.56 | 30 | -- | -- |
| 113.07 | 0.495 | 6.37 | 1.33 | -- | -0.708 | -- | 0.829 | 0.548 | -- | 20.5 | 30 | -- | -- |
| 132.77 | 0.54 | 6.32 | 1.69 | 0.398 | -- | -0.63 | -- | 0.736 | 15.9 | -- | -- | -- | -- |
| 133.66 | 0.541 | 6.32 | 1.68 | 0.406 | -- | -- | -- | 0.733 | 16.5 | -- | -- | -- | -- |
| 112.98 | 0.495 | 6.34 | 1.34 | -- | -0.969 | -- | -- | 0.557 | -- | 19.87 | 261 | -- | -- |
| 150.88 | 0.572 | 6.34 | -- | 0.19 | -1.57 | -- | -- | 0.499 | 17 | 19.19 | 260 | -- | -- |
| 142.46 | 0.558 | 6.32 | 1.67 | -- | -- | -- | -- | 0.722 | -- | -- | -- | -- | -- |
| 208.16 | 0.675 | 6.36 | -- | 0.375 | -- | -- | -- | 0.546 | 16.6 | -- | -- | -- | -- |
| 151.66 | 0.574 | 6.4 | -- | -- | -1.61 | -- | -- | 0.372 | -- | 19.29 | 261 | -- | -- |
| 215.63 | 0.685 | 6.36 | -- | -- | -- | -- | -- | 0.537 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 105.48 | temperature | 20 | 720 | > th | dose independent | rect. | 6 | 20 |
| 2 | 105.65 | temperature | 20 | 270 | < th | dose independent | rect. | 8 | 20 |
| 7 | 105.93 | temperature | 20 | 720 | > th | dose independent | rect. | 8 | 18 |
| 8 | 105.94 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 16 |
| 20 | 106.39 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 23 |
| 34 | 106.66 | temperature | 20 | 10 | < th | dose independent | sin | 9 | NA |
| 37 | 106.68 | temperature | 20 | 10 | < th | dose independent | rect. | 16 | 20 |
| 40 | 106.69 | temperature | 20 | 10 | < th | dose independent | rect. | 18 | 18 |
| 63 | 107.00 | temperature | 20 | 10 | < th | dose independent | rect. | 14 | 22 |
| 64 | 107.03 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 23 |
| 68 | 107.07 | temperature | 20 | 10 | < th | dose independent | rect. | 10 | 23 |
| 75 | 107.14 | temperature | 20 | 720 | > th | dose independent | sin | 17 | NA |
| 76 | 107.16 | temperature | 20 | 270 | < th | dose independent | sin | 13 | NA |
| 99 | 107.36 | temperature | 20 | 270 | < th | dose independent | rect. | 17 | 11 |
| 103 | 107.39 | temperature | 20 | 90 | < th | dose independent | rect. | 11 | 22 |
| 126 | 107.56 | temperature | 20 | 10 | < th | dose independent | rect. | 7 | 23 |
| 132 | 107.61 | temperature | 20 | 10 | > th | dose independent | rect. | 23 | 23 |
| 135 | 107.62 | temperature | 20 | 270 | > th | dose independent | rect. | 10 | 23 |
| 150 | 107.68 | temperature | 20 | 10 | > th | dose independent | sin | 9 | NA |
| 156 | 107.70 | temperature | 20 | 10 | < th | dose independent | rect. | 19 | 23 |
| 163 | 107.73 | temperature | 20 | 10 | < th | dose independent | rect. | 3 | 23 |
| 165 | 107.74 | temperature | 20 | 90 | < th | dose independent | rect. | 17 | 22 |
| 166 | 107.74 | temperature | 20 | 10 | < th | dose independent | rect. | 21 | 23 |
| 172 | 107.76 | temperature | 20 | 10 | > th | dose independent | rect. | 21 | 23 |
| 175 | 107.78 | temperature | 20 | 10 | < th | dose independent | no | NA | NA |
| 176 | 107.79 | temperature | 20 | 270 | < th | dose independent | rect. | 15 | 20 |
| 180 | 107.81 | temperature | 20 | 10 | > th | dose independent | no | NA | NA |
| 186 | 107.82 | temperature | 20 | 720 | < th | dose independent | sin | 17 | NA |
| 200 | 107.87 | temperature | 20 | 10 | < th | dose independent | rect. | 23 | 23 |
| 226 | 107.95 | temperature | 20 | 270 | > th | dose independent | sin | 13 | NA |
| 227 | 107.95 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 4 |
| 239 | 107.99 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 265 | 108.06 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 4 |
| 297 | 108.16 | temperature | 20 | 10 | < th | dose independent | rect. | 18 | 15 |
| 308 | 108.20 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 311 | 108.20 | temperature | 20 | 10 | > th | dose independent | rect. | 19 | 23 |
| 332 | 108.27 | temperature | 20 | 10 | < th | dose independent | rect. | 16 | 17 |
| 347 | 108.32 | temperature | 20 | 10 | < th | dose independent | rect. | 1 | 23 |
| 348 | 108.33 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 354 | 108.34 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 3 |
| 407 | 108.54 | temperature | 20 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 415 | 108.55 | temperature | 20 | 90 | < th | dose independent | rect. | 1 | 23 |
| 483 | 108.68 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 18 |
| 486 | 108.70 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 18 |
| 519 | 108.77 | temperature | 20 | 10 | < th | dose independent | rect. | 14 | 19 |
| 784 | 109.34 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 819 | 109.42 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 852 | 109.48 | temperature | 20 | 270 | < th | dose independent | rect. | 23 | 23 |
| 861 | 109.49 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 22 |
| 962 | 109.64 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 22 |
| 965 | 109.65 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 978 | 109.66 | temperature | 20 | 10 | > th | dose independent | rect. | 3 | 23 |