Os07g0123000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os07g0123000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 65.62 | 0.381 | 5.72 | 1.69 | 0.856 | -0.773 | 0.785 | 2.27 | 0.368 | 13.1 | 25.6 | 898 | -- | -- |
| 72.04 | 0.395 | 5.81 | 1.2 | 1.05 | -0.648 | 0.423 | -- | 0.156 | 12.7 | 26.69 | 1173 | -- | -- |
| 66.63 | 0.38 | 5.71 | 1.76 | 0.975 | -0.841 | -- | 2.56 | 0.338 | 12.6 | 26.4 | 1175 | -- | -- |
| 69.89 | 0.389 | 5.81 | 1.1 | 0.934 | -0.656 | -- | -- | 0.0806 | 12.7 | 27.41 | 1102 | -- | -- |
| 106.37 | 0.48 | 5.71 | 1.71 | -- | -1.2 | -- | 2.07 | 0.535 | -- | 25.6 | 904 | -- | -- |
| 82.81 | 0.427 | 5.84 | 0.887 | 1.1 | -- | 0.359 | -- | -0.057 | 12.5 | -- | -- | -- | -- |
| 83.37 | 0.428 | 5.83 | 0.901 | 1.09 | -- | -- | -- | -0.0553 | 12.5 | -- | -- | -- | -- |
| 112.7 | 0.494 | 5.77 | 1.19 | -- | -1.11 | -- | -- | 0.316 | -- | 25.58 | 933 | -- | -- |
| 99.52 | 0.465 | 5.83 | -- | 0.946 | -0.435 | -- | -- | -0.0139 | 12.5 | 28.4 | 1069 | -- | -- |
| 158.54 | 0.588 | 5.86 | 0.863 | -- | -- | -- | -- | -0.0737 | -- | -- | -- | -- | -- |
| 104.75 | 0.479 | 5.86 | -- | 1.08 | -- | -- | -- | -0.156 | 12.5 | -- | -- | -- | -- |
| 147.87 | 0.566 | 5.81 | -- | -- | -0.871 | -- | -- | 0.108 | -- | 25.57 | 925 | -- | -- |
| 178.18 | 0.623 | 5.88 | -- | -- | -- | -- | -- | -0.169 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.38 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 2 | 58.66 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 4 |
| 6 | 59.39 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 13 |
| 48 | 60.75 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 4 |
| 51 | 60.81 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 2 |
| 68 | 61.57 | temperature | 25 | 720 | > th | dose dependent | sin | 13 | NA |
| 78 | 61.84 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 8 |
| 88 | 62.24 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 2 |
| 100 | 62.26 | temperature | 25 | 720 | < th | dose independent | rect. | 14 | 10 |
| 124 | 62.92 | radiation | 1 | 720 | < th | dose independent | rect. | 17 | 8 |
| 170 | 63.69 | temperature | 25 | 720 | > th | dose independent | sin | 17 | NA |
| 185 | 63.90 | temperature | 25 | 720 | < th | dose independent | sin | 17 | NA |
| 264 | 64.95 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 9 |
| 272 | 65.01 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 11 |
| 277 | 65.06 | temperature | 25 | 720 | > th | dose independent | rect. | 10 | 16 |
| 333 | 65.50 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 363 | 65.67 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 4 |
| 398 | 65.91 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 6 |
| 421 | 66.07 | radiation | 20 | 14400 | < th | dose independent | rect. | 3 | 3 |
| 429 | 66.10 | radiation | 1 | 720 | < th | dose dependent | rect. | 6 | 18 |
| 434 | 66.16 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 21 |
| 461 | 66.39 | temperature | 25 | 720 | < th | dose independent | rect. | 12 | 20 |
| 490 | 66.56 | temperature | 25 | 720 | < th | dose independent | rect. | 4 | 21 |
| 494 | 66.58 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 7 |
| 516 | 66.67 | temperature | 25 | 720 | < th | dose independent | rect. | 19 | 2 |
| 633 | 67.09 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 17 |
| 668 | 67.16 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 19 |
| 716 | 67.28 | temperature | 30 | 720 | < th | dose dependent | sin | 17 | NA |
| 719 | 67.29 | radiation | 1 | 720 | > th | dose independent | rect. | 8 | 11 |
| 769 | 67.40 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 17 |
| 805 | 67.50 | radiation | 1 | 720 | < th | dose independent | rect. | 10 | 14 |
| 868 | 67.62 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 969 | 67.78 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 988 | 67.80 | temperature | 25 | 1440 | > th | dose dependent | rect. | 19 | 23 |