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Os10g0145200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.07 (0.0298) R2 : 0.67
β1 : -0.921 (0.109) R2dD : 0.0535 R2D : 0.0172
β2 : 1.94 (0.0709) R2dC : 0.543 R2C : 0.531
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.681 (0.0636) R2dN8 : 0.111 R2N8 : 0.0666
σ : 0.56
deviance : 143.17
__
_____
C
peak time of C : 12.8
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
112.39 0.498 7.09 -0.888 0.941 -1.03 -0.453 1.28 -0.687 13.7 19.92 10 -- --
115.1 0.5 7.08 -0.908 0.995 -0.96 -1.62 -- -0.691 13.4 20 9 -- --
112.65 0.494 7.09 -0.893 0.934 -1.03 -- 1.6 -0.69 13.8 19.17 9 -- --
126.31 0.523 7.08 -0.938 0.975 -0.996 -- -- -0.684 13.6 20 9 -- --
120.95 0.512 7.11 -0.924 -- -1.66 -- 1.54 -0.744 -- 10.31 132 -- --
132.65 0.54 7.06 -0.863 1.94 -- -1.57 -- -0.673 12.8 -- -- -- --
143.17 0.56 7.07 -0.921 1.94 -- -- -- -0.681 12.8 -- -- -- --
134.2 0.54 7.11 -0.945 -- -1.64 -- -- -0.739 -- 10 134 -- --
150.01 0.57 7.07 -- 1.05 -0.913 -- -- -0.598 13.5 20 12 -- --
378.22 0.909 7.1 -0.991 -- -- -- -- -0.717 -- -- -- -- --
165.53 0.602 7.05 -- 1.95 -- -- -- -0.579 12.8 -- -- -- --
157.12 0.584 7.08 -- -- -1.65 -- -- -0.64 -- 10 128 -- --
404.14 0.938 7.08 -- -- -- -- -- -0.607 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 103.49 temperature 20 270 > th dose independent rect. 23 8
4 104.85 radiation 10 90 < th dose independent rect. 2 16
11 105.99 radiation 20 90 < th dose dependent rect. 2 16
16 106.39 radiation 20 4320 < th dose independent rect. 17 4
25 106.92 humidity 80 10 > th dose independent rect. 2 8
27 107.01 radiation 10 10 < th dose independent rect. 2 8
30 107.05 radiation 10 90 < th dose dependent sin 2 NA
34 107.29 humidity 70 10 > th dose dependent rect. 2 8
36 107.30 radiation 10 10 < th dose independent rect. 2 12
40 107.41 radiation 20 4320 < th dose independent rect. 17 12
49 107.69 radiation 10 90 < th dose independent rect. 2 13
52 107.70 humidity 70 90 > th dose dependent rect. 1 8
69 107.88 humidity 80 90 > th dose independent rect. 1 8
73 107.92 humidity 70 10 > th dose dependent rect. 2 18
74 107.93 humidity 70 10 > th dose dependent rect. 2 16
83 108.09 radiation 30 10 < th dose dependent rect. 2 8
99 108.33 temperature 20 270 > th dose independent rect. 13 17
108 108.41 temperature 20 270 > th dose independent rect. 11 20
129 108.62 temperature 20 270 > th dose independent rect. 23 20
136 108.70 radiation 10 90 < th dose independent sin 3 NA
142 108.79 temperature 20 720 < th dose independent rect. 22 3
143 108.79 temperature 20 270 > th dose independent rect. 24 18
160 108.94 radiation 20 10 < th dose dependent rect. 2 12
162 108.96 radiation 20 90 < th dose dependent rect. 1 10
167 109.00 temperature 10 43200 < th dose dependent rect. 2 1
175 109.09 humidity 80 10 > th dose independent rect. 2 6
176 109.09 humidity 80 10 > th dose independent rect. 2 16
186 109.19 temperature 20 1440 < th dose independent rect. 5 1
198 109.27 radiation 10 10 < th dose dependent sin 1 NA
225 109.43 temperature 20 720 < th dose independent rect. 19 12
233 109.47 radiation 10 90 < th dose independent rect. 1 22
256 109.62 temperature 10 43200 > th dose independent rect. 3 1
290 109.81 temperature 20 720 < th dose independent sin 12 NA
295 109.83 radiation 10 10 < th dose independent rect. 2 21
305 109.92 temperature 10 43200 < th dose independent rect. 3 1
313 109.95 temperature 20 10 > th dose independent rect. 2 5
314 109.96 temperature 20 720 < th dose independent rect. 22 1
327 110.03 humidity 80 90 > th dose dependent rect. 1 20
332 110.07 radiation 20 1440 < th dose independent rect. 11 2
353 110.16 temperature 10 43200 < th dose dependent rect. 2 8
358 110.16 humidity 70 10 > th dose dependent rect. 2 12
364 110.16 temperature 10 43200 < th dose dependent rect. 2 19
367 110.17 humidity 70 10 > th dose dependent rect. 2 14
394 110.26 temperature 15 270 > th dose dependent rect. 24 6
452 110.47 humidity 70 43200 < th dose independent rect. 24 1
453 110.47 temperature 20 720 < th dose independent rect. 20 7
493 110.60 temperature 20 1440 > th dose independent rect. 5 1
524 110.67 humidity 70 43200 < th dose dependent rect. 24 1
539 110.73 humidity 50 43200 < th dose independent rect. 8 1
574 110.82 humidity 80 10 > th dose independent rect. 2 14
588 110.87 humidity 70 10 > th dose dependent sin 5 NA
622 110.96 atmosphere 1000 10 > th dose independent rect. 2 18
634 111.00 atmosphere 1000 90 > th dose independent rect. 1 6
636 111.01 temperature 20 270 > th dose independent rect. 2 1
642 111.02 radiation 20 10 < th dose dependent rect. 13 21
648 111.03 radiation 20 90 < th dose dependent rect. 1 22
654 111.06 wind 5 43200 > th dose independent rect. 8 1
665 111.08 temperature 10 43200 > th dose independent rect. 2 17
672 111.09 atmosphere 995 43200 < th dose dependent rect. 14 3
691 111.13 humidity 90 14400 < th dose independent rect. 22 5
694 111.14 wind 5 43200 < th dose independent rect. 8 1
703 111.18 temperature 10 43200 < th dose dependent sin 2 NA
704 111.19 temperature 20 720 > th dose independent rect. 17 13
715 111.21 temperature 10 43200 < th dose independent rect. 2 19
720 111.23 radiation 40 4320 < th dose independent rect. 15 17
723 111.24 temperature 10 43200 < th dose independent rect. 2 8
763 111.28 radiation 20 10 < th dose dependent rect. 1 23
791 111.31 temperature 20 1440 > th dose independent rect. 22 1
824 111.39 radiation 20 10 < th dose dependent rect. 2 21
842 111.43 radiation 20 10 < th dose dependent rect. 13 19
845 111.44 humidity 50 43200 > th dose independent rect. 19 14
851 111.46 atmosphere 995 43200 < th dose independent rect. 14 1
871 111.51 atmosphere 995 43200 > th dose independent rect. 13 2
878 111.52 temperature 20 720 > th dose independent sin 12 NA
881 111.52 atmosphere 1000 270 > th dose independent rect. 1 17
890 111.54 temperature 20 4320 < th dose independent rect. 18 1
891 111.54 atmosphere 1000 10 > th dose independent rect. 2 5
892 111.54 humidity 50 43200 > th dose independent rect. 3 6
898 111.56 humidity 90 14400 < th dose independent rect. 23 2
915 111.58 humidity 50 43200 < th dose independent rect. 19 14
948 111.60 atmosphere 995 43200 < th dose independent rect. 12 4
973 111.62 humidity 70 43200 > th dose independent rect. 24 1