Os08g0299900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os08g0299900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 181.67 | 0.633 | 5.69 | 0.71 | 2.62 | -1.6 | -1.84 | 1.41 | 0.0486 | 16 | 25.19 | 1479 | -- | -- |
| 182.45 | 0.629 | 5.71 | 0.706 | 2.58 | -1.71 | -1.85 | -- | 0.0243 | 16 | 24.69 | 5664 | -- | -- |
| 189.6 | 0.641 | 5.67 | 0.748 | 2.59 | -1.67 | -- | 1.45 | 0.027 | 16 | 25.3 | 5671 | -- | -- |
| 189.52 | 0.641 | 5.75 | 0.365 | 2.59 | -1.54 | -- | -- | -0.0863 | 16 | 25.7 | 5677 | -- | -- |
| 542.24 | 1.08 | 5.7 | 0.783 | -- | -2.04 | -- | 1.63 | -0.105 | -- | 26.1 | 5528 | -- | -- |
| 273.81 | 0.776 | 5.78 | -0.21 | 2.69 | -- | -1.6 | -- | -0.226 | 15.9 | -- | -- | -- | -- |
| 281.21 | 0.785 | 5.78 | -0.231 | 2.68 | -- | -- | -- | -0.235 | 16 | -- | -- | -- | -- |
| 541.52 | 1.08 | 5.75 | 0.332 | -- | -1.88 | -- | -- | -0.197 | -- | 26 | 5529 | -- | -- |
| 192.28 | 0.646 | 5.77 | -- | 2.57 | -1.5 | -- | -- | -0.141 | 16 | 25.67 | 5620 | -- | -- |
| 675.13 | 1.21 | 5.77 | -0.341 | -- | -- | -- | -- | -0.307 | -- | -- | -- | -- | -- |
| 282.62 | 0.786 | 5.78 | -- | 2.69 | -- | -- | -- | -0.209 | 16 | -- | -- | -- | -- |
| 544.11 | 1.09 | 5.75 | -- | -- | -1.81 | -- | -- | -0.242 | -- | 26.1 | 5529 | -- | -- |
| 678.2 | 1.22 | 5.76 | -- | -- | -- | -- | -- | -0.269 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 172.36 | temperature | 20 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 3 | 172.99 | temperature | 25 | 14400 | > th | dose dependent | rect. | 18 | 6 |
| 9 | 173.54 | temperature | 20 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 10 | 173.56 | temperature | 25 | 14400 | > th | dose dependent | rect. | 20 | 4 |
| 12 | 173.60 | temperature | 25 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 16 | 173.70 | temperature | 25 | 14400 | > th | dose dependent | rect. | 18 | 14 |
| 36 | 174.01 | temperature | 25 | 14400 | > th | dose dependent | sin | 11 | NA |
| 55 | 174.35 | temperature | 20 | 43200 | > th | dose independent | rect. | 11 | 11 |
| 88 | 174.74 | temperature | 25 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 105 | 174.90 | temperature | 20 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 139 | 175.27 | temperature | 20 | 43200 | < th | dose independent | rect. | 12 | 10 |
| 143 | 175.31 | temperature | 20 | 43200 | > th | dose independent | sin | 19 | NA |
| 192 | 175.66 | temperature | 25 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 213 | 175.81 | temperature | 25 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 247 | 176.07 | temperature | 20 | 43200 | < th | dose independent | sin | 19 | NA |
| 249 | 176.07 | temperature | 25 | 43200 | < th | dose dependent | rect. | 10 | 9 |
| 255 | 176.10 | temperature | 25 | 43200 | < th | dose dependent | rect. | 12 | 6 |
| 337 | 176.43 | temperature | 25 | 14400 | > th | dose dependent | rect. | 2 | 8 |
| 378 | 176.59 | temperature | 25 | 14400 | > th | dose dependent | rect. | 3 | 5 |
| 410 | 176.68 | temperature | 25 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 445 | 176.80 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 4 |
| 520 | 177.06 | temperature | 25 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 536 | 177.10 | temperature | 25 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 551 | 177.15 | temperature | 30 | 14400 | < th | dose independent | rect. | 13 | 22 |
| 618 | 177.36 | temperature | 30 | 14400 | > th | dose independent | rect. | 13 | 22 |
| 619 | 177.36 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 22 |
| 657 | 177.44 | temperature | 25 | 43200 | < th | dose dependent | sin | 21 | NA |
| 662 | 177.45 | temperature | 25 | 14400 | > th | dose dependent | no | NA | NA |
| 663 | 177.46 | temperature | 25 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 669 | 177.47 | temperature | 20 | 43200 | > th | dose independent | no | NA | NA |
| 675 | 177.47 | temperature | 20 | 43200 | > th | dose independent | rect. | 18 | 23 |
| 676 | 177.47 | temperature | 25 | 14400 | > th | dose dependent | rect. | 1 | 23 |
| 677 | 177.47 | temperature | 25 | 14400 | > th | dose dependent | rect. | 3 | 23 |
| 678 | 177.47 | temperature | 25 | 14400 | > th | dose dependent | rect. | 5 | 23 |
| 680 | 177.48 | temperature | 20 | 43200 | > th | dose independent | rect. | 14 | 23 |
| 696 | 177.50 | temperature | 30 | 14400 | > th | dose independent | rect. | 18 | 22 |
| 711 | 177.52 | temperature | 25 | 43200 | < th | dose independent | rect. | 14 | 2 |
| 721 | 177.53 | temperature | 25 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 729 | 177.54 | temperature | 25 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 740 | 177.55 | temperature | 25 | 14400 | > th | dose dependent | rect. | 9 | 23 |
| 760 | 177.59 | temperature | 25 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 761 | 177.59 | temperature | 30 | 14400 | < th | dose independent | rect. | 24 | 16 |
| 777 | 177.61 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 8 |
| 850 | 177.67 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 20 |
| 898 | 177.69 | temperature | 30 | 14400 | < th | dose independent | no | NA | NA |
| 911 | 177.69 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 17 |
| 953 | 177.70 | temperature | 20 | 43200 | < th | dose independent | rect. | 24 | 22 |
| 987 | 177.74 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 8 |