BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0154000 Os10g0154000|AK065734
(226 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0154000 Similar to Vesicle-associated membrane protein... 422 e-118
Os06g0174400 Similar to Vesicle-associated membrane protein... 234 3e-62
Os02g0803600 Longin-like domain containing protein 222 2e-58
Os07g0194000 Similar to Vesicle-associated membrane protein... 138 3e-33
Os03g0165800 Similar to Vesicle-associated membrane protein... 136 1e-32
Os08g0558600 Longin domain containing protein 132 2e-31
Os03g0803000 Longin domain containing protein 130 5e-31
Os12g0639800 Similar to Vesicle-associated membrane protein... 116 1e-26
Os07g0249200 Similar to Vesicle-associated membrane protein... 115 3e-26
>Os10g0154000 Similar to Vesicle-associated membrane protein 714 (AtVAMP714)
Length = 226
Score = 422 bits (1084), Expect = e-118, Method: Compositional matrix adjust.
Identities = 205/226 (90%), Positives = 205/226 (90%)
Query: 1 MAIVYAVVARGTVVLAEFSAVSGNAGAVARRILEKLPPDAESRLCFAQDRYIFHVLRSPP 60
MAIVYAVVARGTVVLAEFSAVSGNAGAVARRILEKLPPDAESRLCFAQDRYIFHVLRSPP
Sbjct: 1 MAIVYAVVARGTVVLAEFSAVSGNAGAVARRILEKLPPDAESRLCFAQDRYIFHVLRSPP 60
Query: 61 PAAADGLTFLCMANDTFGRRIPFLYLEDIQMRFIKNYGRIAHNALAYAMNDEFSRVLHQQ 120
PAAADGLTFLCMANDTFGRRIPFLYLEDIQMRFIKNYGRIAHNALAYAMNDEFSRVLHQQ
Sbjct: 61 PAAADGLTFLCMANDTFGRRIPFLYLEDIQMRFIKNYGRIAHNALAYAMNDEFSRVLHQQ 120
Query: 121 MEYFSSNPSADTLNRLRGEVSEIHTVMVDNIEKILDRGERISLLVDKTSTMQDSAFHFRK 180
MEYFSSNPSADTLNRLRGEVSEIHTVMVDNIEKILDRGERISLLVDKTSTMQDSAFHFRK
Sbjct: 121 MEYFSSNPSADTLNRLRGEVSEIHTVMVDNIEKILDRGERISLLVDKTSTMQDSAFHFRK 180
Query: 181 QSRRLRRALWMKNXXXXXXXXXXXXXXXXXXXXXFCGGLSLPSCRS 226
QSRRLRRALWMKN FCGGLSLPSCRS
Sbjct: 181 QSRRLRRALWMKNAKLLAVLTAVIVLLLYLIIAAFCGGLSLPSCRS 226
>Os06g0174400 Similar to Vesicle-associated membrane protein 712 (AtVAMP712)
Length = 221
Score = 234 bits (597), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 118/225 (52%), Positives = 159/225 (70%), Gaps = 7/225 (3%)
Query: 1 MAIVYAVVARGTVVLAEFSAVSGNAGAVARRILEKLPPD-AESRLCFAQDRYIFHVLRSP 59
MAI+YAVVARGTVVLAE SA + NAGAVAR++LE+LP A+S + + QDRY+FH R+
Sbjct: 1 MAILYAVVARGTVVLAEHSAAATNAGAVARQVLERLPGGGADSHVSYTQDRYVFHAKRT- 59
Query: 60 PPAAADGLTFLCMANDTFGRRIPFLYLEDIQMRFIKNYGRIAHNALAYAMNDEFSRVLHQ 119
DG+T LCMA++ GRRIPF +LEDI RF+K YGR A +LAY MNDEFSRVL Q
Sbjct: 60 -----DGITALCMADEAAGRRIPFAFLEDIHGRFVKTYGRAALTSLAYGMNDEFSRVLSQ 114
Query: 120 QMEYFSSNPSADTLNRLRGEVSEIHTVMVDNIEKILDRGERISLLVDKTSTMQDSAFHFR 179
QM+Y+S++P+AD +NR+RGE+S++ TVM+DNI+K+L+RG+R+ +LVDKT+ MQ + F+
Sbjct: 115 QMDYYSNDPNADRINRMRGEISQVRTVMIDNIDKVLERGDRLDMLVDKTANMQGNTIRFK 174
Query: 180 KQSRRLRRALWMKNXXXXXXXXXXXXXXXXXXXXXFCGGLSLPSC 224
+Q+RR R W +N C G +LP+C
Sbjct: 175 RQARRFRNTTWWRNVKLTIALIFLLTVIIYVVLVFMCHGFTLPTC 219
>Os02g0803600 Longin-like domain containing protein
Length = 226
Score = 222 bits (565), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 111/228 (48%), Positives = 149/228 (65%), Gaps = 12/228 (5%)
Query: 3 IVYAVVARGTVVLAEFS-AVSGNAGAVARRILEKLPPDAES-----RLCFAQDRYIFHVL 56
I YA VARG VV+AE A NAGAVAR+IL++L + + QD ++FHV
Sbjct: 4 IQYAAVARGAVVMAEHGDAAFPNAGAVARQILDRLSAGDGGGGGDCNISYTQDLHVFHVK 63
Query: 57 RSPPPAAADGLTFLCMANDTFGRRIPFLYLEDIQMRFIKNYGRIAHNALAYAMNDEFSRV 116
R+ DG+T LCMA+D GRRIPF +LEDI RF+K YGR A ALAYAMNDEFSRV
Sbjct: 64 RT------DGVTALCMADDAAGRRIPFAFLEDIHGRFVKTYGRAALTALAYAMNDEFSRV 117
Query: 117 LHQQMEYFSSNPSADTLNRLRGEVSEIHTVMVDNIEKILDRGERISLLVDKTSTMQDSAF 176
L QQM+Y+S++P+AD ++R+RGE+ ++ VM+DNI+K+L+RG+R+ LLVDKT+TMQ +
Sbjct: 118 LGQQMDYYSNDPNADRISRMRGEMDQVRNVMIDNIDKVLERGDRLELLVDKTATMQGNTM 177
Query: 177 HFRKQSRRLRRALWMKNXXXXXXXXXXXXXXXXXXXXXFCGGLSLPSC 224
F++Q+RR R +W +N C G +LPSC
Sbjct: 178 RFKRQARRFRNTVWWRNVKLTAASVFILLVIIYIVLVYMCHGFTLPSC 225
>Os07g0194000 Similar to Vesicle-associated membrane protein 725 (AtVAMP725)
Length = 220
Score = 138 bits (347), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 119/194 (61%), Gaps = 9/194 (4%)
Query: 2 AIVYAVVARGTVVLAEFSAVSGNAGAVARRILEKLPPDAESRLCFAQDRYIFHVLRSPPP 61
+++YA VARGTVVLAE++ +GN +A + L+KLP + ++ + D + F+ L
Sbjct: 5 SLIYAFVARGTVVLAEYTEFTGNFTTIAAQCLQKLPA-SNNKFTYNCDGHTFNYL----- 58
Query: 62 AAADGLTFLCMANDTFGRRIPFLYLEDIQMRFIKNYGRIAHNALAY-AMNDEFSRVLHQQ 120
DG T+ +A ++ GR+IP +L+ ++ F K YG A ++N EF L +
Sbjct: 59 -VEDGFTYCVVAVESVGRQIPIAFLDRVKEDFTKRYGGGKAATAAANSLNREFGSKLKEH 117
Query: 121 MEYFSSNPSA-DTLNRLRGEVSEIHTVMVDNIEKILDRGERISLLVDKTSTMQDSAFHFR 179
M+Y +P L +++ +VSE+ VM++NIEK+LDRGE+I LLVDKT ++ A FR
Sbjct: 118 MQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFR 177
Query: 180 KQSRRLRRALWMKN 193
+Q ++RR +W++N
Sbjct: 178 QQGTKVRRKMWLQN 191
>Os03g0165800 Similar to Vesicle-associated membrane protein 725 (AtVAMP725)
Length = 223
Score = 136 bits (342), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 118/196 (60%), Gaps = 13/196 (6%)
Query: 2 AIVYAVVARGTVVLAEFSAVSGNAGAVARRILEKLPPDAESRLCFAQDRYIF--HVLRSP 59
+VY+ VARG VVLA+ + VSGN +VA + L+KLP +R + D + F HV
Sbjct: 8 TLVYSFVARGAVVLADHAEVSGNFASVAAQCLQKLPS-TNNRHSYNCDGHTFNYHV---- 62
Query: 60 PPAAADGLTFLCMANDTFGRRIPFLYLEDIQMRFIKNY-GRIAHNALAYAMNDEFSRVLH 118
DG T+ +A ++ GR++P ++E ++ F K Y G A NA A ++ E+ L
Sbjct: 63 ----HDGFTYCVVATESAGRQLPVGFIERVKEDFSKKYSGGKAKNATANSLKREYGPKLK 118
Query: 119 QQMEYFSSNPSA-DTLNRLRGEVSEIHTVMVDNIEKILDRGERISLLVDKTSTMQDSAFH 177
+ M+Y ++P D L +++ +V+E+ VM+ NIEK+LDRGE+I LLVDKT ++ A
Sbjct: 119 EHMKYCDAHPEEIDKLAKVKAQVTEVKGVMMQNIEKVLDRGEKIELLVDKTEDLRSQAQD 178
Query: 178 FRKQSRRLRRALWMKN 193
FRK ++RR +W +N
Sbjct: 179 FRKAGTKIRRKMWWEN 194
>Os08g0558600 Longin domain containing protein
Length = 241
Score = 132 bits (332), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 124/240 (51%), Gaps = 29/240 (12%)
Query: 2 AIVYAVVARGTVVLAEFSAVSGNAGAVARRILEKLPPDAESRLCFAQDRYIFHVLRSPPP 61
+++Y+ VA+G+VVLAE +A SGN +A + L+KLPP+ S+ ++ D + F+ L
Sbjct: 7 SLIYSFVAKGSVVLAEHTAFSGNFSTIAVQCLQKLPPNT-SKSTYSCDGHTFNFL----- 60
Query: 62 AAADGLTFLCMANDTFGRRIPFLYLEDIQMRFIKNYGRIAHN------------------ 103
G FL +A++ GR +PF++L+ ++ F++ YG
Sbjct: 61 -VDRGFVFLVVADEAVGRSVPFVFLDRVKEDFMQRYGSSIDEEGQHPLADDADDDDFLLE 119
Query: 104 ---ALAYAMNDEFSRVLHQQMEYFSSNPSA-DTLNRLRGEVSEIHTVMVDNIEKILDRGE 159
++AY ++ EF L M Y ++P L++++ ++E+ +M+DNIEKIL+RGE
Sbjct: 120 DRFSIAYNLDREFGPRLKDHMLYCINHPEEISKLSKVKAHLTEVKGIMMDNIEKILERGE 179
Query: 160 RISLLVDKTSTMQDSAFHFRKQSRRLRRALWMKNXXXXXXXXXXXXXXXXXXXXXFCGGL 219
+I LLV KT T+Q A F + R LRR +W++N CGG
Sbjct: 180 KIELLVGKTETLQSQADSFHRHGRELRRKMWLQNLRFKLMVGGAVAALILFLWLIICGGF 239
>Os03g0803000 Longin domain containing protein
Length = 220
Score = 130 bits (328), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 116/194 (59%), Gaps = 9/194 (4%)
Query: 2 AIVYAVVARGTVVLAEFSAVSGNAGAVARRILEKLPPDAESRLCFAQDRYIFHVLRSPPP 61
+++YA VARGTV+LAE++ +GN +A + L KLP + ++ + D + F+ L
Sbjct: 5 SLIYAFVARGTVILAEYTEFTGNFTTIASQCLMKLPA-SNNKFTYNCDGHTFNYL----- 58
Query: 62 AAADGLTFLCMANDTFGRRIPFLYLEDIQMRFIKNYGRIAHNALAY-AMNDEFSRVLHQQ 120
DG T+ +A ++ GR+IP +L+ ++ F K Y A ++N +F L +
Sbjct: 59 -VEDGFTYCVVAVESVGRQIPIAFLDRVKDDFTKRYAGGKAATAAANSLNRDFGSKLKEH 117
Query: 121 MEYFSSNPSA-DTLNRLRGEVSEIHTVMVDNIEKILDRGERISLLVDKTSTMQDSAFHFR 179
M+Y +P L +++ +VSE+ VM++NIEK+LDRGE+I LLVDKT ++ A FR
Sbjct: 118 MQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFR 177
Query: 180 KQSRRLRRALWMKN 193
+ ++RR +W++N
Sbjct: 178 QAGTQVRRKMWLQN 191
>Os12g0639800 Similar to Vesicle-associated membrane protein 722 (AtVAMP722)
(Synaptobrevin- related protein 1)
Length = 212
Score = 116 bits (290), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 115/197 (58%), Gaps = 13/197 (6%)
Query: 3 IVYAVVARGTVVLAEFSAVSGNAGAVARRILEKLPPDAESRLCFAQDRYIFHVLRSPPPA 62
++YA+VARGTVVLAE +A +GN +A + L+KLP ++RL + D + F+ L
Sbjct: 6 LIYAMVARGTVVLAEHTAYAGNFRDIAAQCLQKLPA-GDNRLTYTCDAHTFNFL------ 58
Query: 63 AADGLTFLCMANDTFGRRIPFLYLEDIQMRFIKNYGRIAHNALAY-AMNDEFSRVLHQQM 121
G + +A ++ GR+IP L+ I+ F K Y A +++ +F L +QM
Sbjct: 59 IHQGYAYCVVATESSGRQIPLALLDMIKEDFNKRYAGGKAATAAANSLSRDFGPRLGEQM 118
Query: 122 EYFSSNPS-ADTLNRLRGEVSEIHTVMVDNIEKILDRGERISLLVDKTSTMQD----SAF 176
+Y +P L +++ +VSE+ +M++NI+K +DRG++I +LV +T + D SA
Sbjct: 119 KYCMDHPEEVSKLAKVKAQVSEVKGIMMENIDKAIDRGQQIDVLVSRTEQLHDQAGISAA 178
Query: 177 HFRKQSRRLRRALWMKN 193
FR+Q R+RR +W +N
Sbjct: 179 DFRQQGTRVRRKMWYQN 195
>Os07g0249200 Similar to Vesicle-associated membrane protein 724 (AtVAMP724)
(SYBL1-like protein)
Length = 248
Score = 115 bits (288), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 113/201 (56%), Gaps = 16/201 (7%)
Query: 3 IVYAVVARGTVVLAEFSAVSGNAGAVARRILEKLPPDAES--------RLCFAQDRYIFH 54
++YA VARGT VLAE++ +GN A+A + L++LP R +A D + F+
Sbjct: 23 LIYAFVARGTAVLAEYTEFTGNFPALAAQCLQRLPASGGGGSGGGAPARFSYACDGHTFN 82
Query: 55 VLRSPPPAAADGLTFLCMANDTFGRRIPFLYLEDIQMRFIKNYGR-IAHNALAYAMNDEF 113
L G + +A ++ + + +LE ++ F+K YG A ALA ++N E+
Sbjct: 83 FLLH------RGYAYCVVAKESVPKNVSVAFLERLKDDFMKRYGGGKADTALAKSLNKEY 136
Query: 114 SRVLHQQMEY-FSSNPSADTLNRLRGEVSEIHTVMVDNIEKILDRGERISLLVDKTSTMQ 172
V+ Q M+Y + + +++ +VSE+ +M++NIEK L RGE++S L DKTS +Q
Sbjct: 137 GPVIKQHMQYVLDHSEEIEKTLKVQAQVSEVKNIMLENIEKTLGRGEKLSELQDKTSDLQ 196
Query: 173 DSAFHFRKQSRRLRRALWMKN 193
A F+K+ ++RR W++N
Sbjct: 197 SQAQEFKKKGVKIRRKTWLQN 217
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.326 0.137 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,840,319
Number of extensions: 252156
Number of successful extensions: 924
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 903
Number of HSP's successfully gapped: 9
Length of query: 226
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 129
Effective length of database: 11,971,043
Effective search space: 1544264547
Effective search space used: 1544264547
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 154 (63.9 bits)