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Os07g0194000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Vesicle-associated membrane protein 725 (AtVAMP725).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.7 (0.0134) R2 : 0.72
β1 : 1.12 (0.049) R2dD : 0.334 R2D : 0.287
β2 : 0.776 (0.0318) R2dC : 0.367 R2C : 0.369
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.26 (0.0285) R2dN8 : 0.0681 R2N8 : 0.0061
σ : 0.251
deviance : 28.82
__
_____
C
peak time of C : 0.699
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
22.07 0.221 10.7 1.1 0.46 -0.395 -0.595 0.0165 0.26 1.18 19.79 20 -- --
22.05 0.219 10.7 1.1 0.459 -0.396 -0.611 -- 0.26 1.18 19.72 19 -- --
22.86 0.223 10.7 1.12 0.453 -0.385 -- 0.421 0.262 1.06 18.32 16 -- --
23.57 0.226 10.7 1.13 0.463 -0.39 -- -- 0.264 0.992 19.74 19 -- --
29.02 0.251 10.7 1.15 -- -0.6 -- 0.55 0.284 -- 17.7 19 -- --
27.47 0.246 10.7 1.1 0.775 -- -0.567 -- 0.256 0.778 -- -- -- --
28.82 0.251 10.7 1.12 0.776 -- -- -- 0.26 0.699 -- -- -- --
28.38 0.248 10.7 1.13 -- -0.633 -- -- 0.325 -- 7.02 139 -- --
56.96 0.352 10.8 -- 0.528 -0.345 -- -- 0.149 1.06 19.82 18 -- --
66.53 0.381 10.7 1.15 -- -- -- -- 0.274 -- -- -- -- --
61.91 0.368 10.8 -- 0.794 -- -- -- 0.135 0.765 -- -- -- --
59.79 0.36 10.8 -- -- -0.642 -- -- 0.157 -- 9.255 51 -- --
101.31 0.47 10.8 -- -- -- -- -- 0.146 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 19.23 radiation 1.0 270 > th dose independent rect. 6 7
2 19.37 temperature 15.0 270 > th dose independent rect. 6 7
4 19.61 radiation 1.0 270 > th dose independent rect. 4 9
15 19.63 atmosphere 1000.0 270 > th dose independent rect. 24 7
18 19.81 precipitation 0.1 270 < th dose independent rect. 20 15
19 19.81 temperature 15.0 270 > th dose independent rect. 13 17
20 19.81 precipitation 0.1 270 < th dose dependent rect. 20 15
22 19.84 wind 7.0 270 < th dose independent rect. 6 7
33 19.85 wind 7.0 270 < th dose independent rect. 20 15
35 19.86 radiation 40.0 270 < th dose independent rect. 13 17
38 19.95 atmosphere 995.0 270 > th dose independent rect. 13 17
40 19.96 precipitation 0.1 270 < th dose independent rect. 6 7
41 19.96 precipitation 0.1 270 < th dose dependent rect. 6 7
42 19.97 radiation 40.0 90 < th dose independent rect. 13 8
43 20.00 radiation 1.0 270 > th dose independent sin 3 NA
46 20.00 humidity 90.0 90 < th dose independent rect. 7 8
50 20.03 atmosphere 995.0 270 > th dose independent rect. 6 7
51 20.03 atmosphere 1015.0 270 < th dose independent rect. 6 7
53 20.06 temperature 10.0 270 > th dose independent rect. 11 9
54 20.06 atmosphere 1015.0 270 < th dose independent rect. 11 9
55 20.06 temperature 10.0 270 > th dose independent rect. 20 15
56 20.06 atmosphere 995.0 270 > th dose independent rect. 20 15
59 20.07 radiation 30.0 270 < th dose dependent rect. 24 8
61 20.08 humidity 60.0 270 > th dose dependent rect. 24 8
63 20.10 radiation 20.0 10 < th dose independent rect. 2 19
66 20.11 wind 9.0 270 < th dose independent rect. 13 17
69 20.12 atmosphere 995.0 270 > th dose independent rect. 11 9
73 20.14 radiation 40.0 10 < th dose dependent rect. 14 19
74 20.15 radiation 20.0 270 < th dose independent rect. 24 8
75 20.15 precipitation 0.1 270 < th dose independent rect. 7 17
77 20.15 precipitation 0.1 270 < th dose dependent rect. 7 17
78 20.16 humidity 50.0 270 > th dose independent rect. 20 15
82 20.17 radiation 20.0 10 < th dose independent rect. 4 17
86 20.18 radiation 40.0 90 < th dose dependent rect. 13 20
87 20.19 atmosphere 1010.0 270 < th dose independent rect. 24 7
98 20.22 humidity 90.0 10 < th dose independent rect. 7 8
106 20.26 wind 9.0 270 < th dose independent rect. 11 9
107 20.26 radiation 10.0 270 < th dose dependent rect. 1 13
108 20.27 humidity 50.0 270 > th dose independent rect. 6 7
113 20.28 wind 1.0 270 > th dose independent rect. 11 9
132 20.33 radiation 1.0 270 < th dose independent sin 4 NA
156 20.39 humidity 70.0 270 > th dose independent rect. 24 7
162 20.40 radiation 40.0 10 < th dose dependent rect. 12 21
167 20.42 radiation 10.0 270 < th dose dependent sin 5 NA
174 20.44 temperature 15.0 270 > th dose independent rect. 24 7
177 20.44 wind 9.0 270 < th dose independent rect. 7 17
182 20.45 wind 9.0 270 < th dose independent rect. 24 7
184 20.45 temperature 30.0 270 < th dose independent rect. 24 7
185 20.45 humidity 50.0 270 > th dose independent rect. 24 7
190 20.45 temperature 10.0 270 > th dose independent rect. 7 17
194 20.46 precipitation 0.1 270 < th dose independent rect. 18 8
197 20.46 precipitation 0.1 270 < th dose dependent rect. 18 8
211 20.49 radiation 30.0 10 < th dose dependent rect. 4 17
233 20.54 radiation 1.0 270 < th dose independent rect. 2 12
259 20.57 precipitation 0.1 270 < th dose independent rect. 11 9
260 20.57 radiation 40.0 270 < th dose independent rect. 11 20
261 20.57 precipitation 0.1 270 < th dose dependent rect. 11 9
267 20.59 precipitation 0.1 270 < th dose independent rect. 24 7
269 20.59 precipitation 0.1 270 < th dose dependent rect. 24 7
297 20.63 temperature 10.0 270 > th dose independent rect. 18 8
298 20.63 humidity 50.0 270 > th dose independent rect. 18 8
299 20.63 radiation 20.0 270 < th dose independent rect. 18 8
303 20.63 temperature 10.0 270 > th dose independent rect. 2 16
305 20.63 atmosphere 1015.0 270 < th dose independent rect. 2 16
309 20.64 wind 9.0 270 < th dose independent rect. 18 8
312 20.64 radiation 30.0 270 < th dose dependent rect. 18 8
316 20.65 atmosphere 995.0 270 > th dose independent rect. 2 16
364 20.68 humidity 80.0 270 > th dose dependent rect. 24 15
372 20.69 precipitation 0.1 270 < th dose independent rect. 13 17
380 20.69 precipitation 0.1 270 < th dose dependent rect. 13 17
391 20.70 atmosphere 995.0 270 > th dose independent rect. 18 8
394 20.70 radiation 40.0 10 < th dose dependent rect. 2 19
410 20.73 atmosphere 1015.0 270 < th dose independent rect. 13 17
413 20.73 radiation 20.0 10 < th dose independent rect. 24 21
431 20.75 radiation 40.0 90 < th dose dependent rect. 3 18
444 20.77 humidity 50.0 270 > th dose independent rect. 7 17
472 20.80 temperature 30.0 270 < th dose independent rect. 18 8
510 20.82 wind 9.0 270 < th dose independent rect. 2 16
527 20.83 wind 1.0 270 > th dose independent rect. 6 7
530 20.83 wind 1.0 270 > th dose independent rect. 7 17
531 20.83 radiation 20.0 10 < th dose independent rect. 14 18
557 20.85 wind 9.0 270 < th dose dependent rect. 6 7
573 20.87 wind 1.0 270 > th dose independent rect. 18 8
695 20.98 atmosphere 1000.0 10 > th dose independent rect. 2 7
854 21.07 humidity 90.0 270 < th dose independent rect. 20 16
860 21.07 humidity 70.0 90 > th dose dependent sin 5 NA
872 21.08 humidity 90.0 270 < th dose independent rect. 19 18
917 21.10 temperature 10.0 270 > th dose dependent rect. 24 7
924 21.11 humidity 80.0 270 > th dose dependent sin 7 NA
997 21.15 precipitation 0.1 270 < th dose independent rect. 2 16