BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0194000 Os07g0194000|AK060910
(220 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0194000 Similar to Vesicle-associated membrane protein... 394 e-110
Os03g0803000 Longin domain containing protein 384 e-107
Os03g0165800 Similar to Vesicle-associated membrane protein... 318 2e-87
Os12g0639800 Similar to Vesicle-associated membrane protein... 281 2e-76
Os08g0558600 Longin domain containing protein 271 2e-73
Os07g0249200 Similar to Vesicle-associated membrane protein... 268 2e-72
Os10g0154000 Similar to Vesicle-associated membrane protein... 147 5e-36
Os06g0174400 Similar to Vesicle-associated membrane protein... 137 4e-33
Os02g0803600 Longin-like domain containing protein 129 1e-30
>Os07g0194000 Similar to Vesicle-associated membrane protein 725 (AtVAMP725)
Length = 220
Score = 394 bits (1012), Expect = e-110, Method: Compositional matrix adjust.
Identities = 202/220 (91%), Positives = 202/220 (91%)
Query: 1 MGQQSLIYAFVARGTVVLAEYTEFTGNFTTIAAQCLQKLPASNNKFTYNCDGHTFNYLVE 60
MGQQSLIYAFVARGTVVLAEYTEFTGNFTTIAAQCLQKLPASNNKFTYNCDGHTFNYLVE
Sbjct: 1 MGQQSLIYAFVARGTVVLAEYTEFTGNFTTIAAQCLQKLPASNNKFTYNCDGHTFNYLVE 60
Query: 61 DGFTYCVVAVESVGRQIPIAFLDRVKEDFTKRYGGGKAATAAANSLNREFGSKLKEHMQY 120
DGFTYCVVAVESVGRQIPIAFLDRVKEDFTKRYGGGKAATAAANSLNREFGSKLKEHMQY
Sbjct: 61 DGFTYCVVAVESVGRQIPIAFLDRVKEDFTKRYGGGKAATAAANSLNREFGSKLKEHMQY 120
Query: 121 CVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQG 180
CVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQG
Sbjct: 121 CVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQG 180
Query: 181 TKVRRKMWLQNMKXXXXXXXXXXXXXXXXXXSVCHGFKCK 220
TKVRRKMWLQNMK SVCHGFKCK
Sbjct: 181 TKVRRKMWLQNMKIKLIVLGIIIALILIIILSVCHGFKCK 220
>Os03g0803000 Longin domain containing protein
Length = 220
Score = 384 bits (985), Expect = e-107, Method: Compositional matrix adjust.
Identities = 194/220 (88%), Positives = 199/220 (90%)
Query: 1 MGQQSLIYAFVARGTVVLAEYTEFTGNFTTIAAQCLQKLPASNNKFTYNCDGHTFNYLVE 60
MGQQSLIYAFVARGTV+LAEYTEFTGNFTTIA+QCL KLPASNNKFTYNCDGHTFNYLVE
Sbjct: 1 MGQQSLIYAFVARGTVILAEYTEFTGNFTTIASQCLMKLPASNNKFTYNCDGHTFNYLVE 60
Query: 61 DGFTYCVVAVESVGRQIPIAFLDRVKEDFTKRYGGGKAATAAANSLNREFGSKLKEHMQY 120
DGFTYCVVAVESVGRQIPIAFLDRVK+DFTKRY GGKAATAAANSLNR+FGSKLKEHMQY
Sbjct: 61 DGFTYCVVAVESVGRQIPIAFLDRVKDDFTKRYAGGKAATAAANSLNRDFGSKLKEHMQY 120
Query: 121 CVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQG 180
CVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQ G
Sbjct: 121 CVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQAG 180
Query: 181 TKVRRKMWLQNMKXXXXXXXXXXXXXXXXXXSVCHGFKCK 220
T+VRRKMWLQNMK SVCHGFKCK
Sbjct: 181 TQVRRKMWLQNMKIKLIVLGIIIALILIIILSVCHGFKCK 220
>Os03g0165800 Similar to Vesicle-associated membrane protein 725 (AtVAMP725)
Length = 223
Score = 318 bits (816), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 145/217 (66%), Positives = 173/217 (79%)
Query: 3 QQSLIYAFVARGTVVLAEYTEFTGNFTTIAAQCLQKLPASNNKFTYNCDGHTFNYLVEDG 62
+ +L+Y+FVARG VVLA++ E +GNF ++AAQCLQKLP++NN+ +YNCDGHTFNY V DG
Sbjct: 6 RTTLVYSFVARGAVVLADHAEVSGNFASVAAQCLQKLPSTNNRHSYNCDGHTFNYHVHDG 65
Query: 63 FTYCVVAVESVGRQIPIAFLDRVKEDFTKRYGGGKAATAAANSLNREFGSKLKEHMQYCV 122
FTYCVVA ES GRQ+P+ F++RVKEDF+K+Y GGKA A ANSL RE+G KLKEHM+YC
Sbjct: 66 FTYCVVATESAGRQLPVGFIERVKEDFSKKYSGGKAKNATANSLKREYGPKLKEHMKYCD 125
Query: 123 DHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTK 182
HPEEI KLAKVKAQV+EVKGVMM+NIEKVLDRGEKIELLVDKTE+LRSQAQDFR+ GTK
Sbjct: 126 AHPEEIDKLAKVKAQVTEVKGVMMQNIEKVLDRGEKIELLVDKTEDLRSQAQDFRKAGTK 185
Query: 183 VRRKMWLQNMKXXXXXXXXXXXXXXXXXXSVCHGFKC 219
+RRKMW +NMK +VC C
Sbjct: 186 IRRKMWWENMKMKLIVFGIVVALILVIILTVCRDLNC 222
>Os12g0639800 Similar to Vesicle-associated membrane protein 722 (AtVAMP722)
(Synaptobrevin- related protein 1)
Length = 212
Score = 281 bits (719), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 137/197 (69%), Positives = 162/197 (82%), Gaps = 4/197 (2%)
Query: 1 MGQQSLIYAFVARGTVVLAEYTEFTGNFTTIAAQCLQKLPASNNKFTYNCDGHTFNYLVE 60
M + LIYA VARGTVVLAE+T + GNF IAAQCLQKLPA +N+ TY CD HTFN+L+
Sbjct: 1 MAESKLIYAMVARGTVVLAEHTAYAGNFRDIAAQCLQKLPAGDNRLTYTCDAHTFNFLIH 60
Query: 61 DGFTYCVVAVESVGRQIPIAFLDRVKEDFTKRYGGGKAATAAANSLNREFGSKLKEHMQY 120
G+ YCVVA ES GRQIP+A LD +KEDF KRY GGKAATAAANSL+R+FG +L E M+Y
Sbjct: 61 QGYAYCVVATESSGRQIPLALLDMIKEDFNKRYAGGKAATAAANSLSRDFGPRLGEQMKY 120
Query: 121 CVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQ----AQDF 176
C+DHPEE+SKLAKVKAQVSEVKG+MMENI+K +DRG++I++LV +TE L Q A DF
Sbjct: 121 CMDHPEEVSKLAKVKAQVSEVKGIMMENIDKAIDRGQQIDVLVSRTEQLHDQAGISAADF 180
Query: 177 RQQGTKVRRKMWLQNMK 193
RQQGT+VRRKMW QNMK
Sbjct: 181 RQQGTRVRRKMWYQNMK 197
>Os08g0558600 Longin domain containing protein
Length = 241
Score = 271 bits (694), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 129/237 (54%), Positives = 167/237 (70%), Gaps = 20/237 (8%)
Query: 3 QQSLIYAFVARGTVVLAEYTEFTGNFTTIAAQCLQKLPASNNKFTYNCDGHTFNYLVEDG 62
+QSLIY+FVA+G+VVLAE+T F+GNF+TIA QCLQKLP + +K TY+CDGHTFN+LV+ G
Sbjct: 5 KQSLIYSFVAKGSVVLAEHTAFSGNFSTIAVQCLQKLPPNTSKSTYSCDGHTFNFLVDRG 64
Query: 63 FTYCVVAVESVGRQIPIAFLDRVKEDFTKRYGGG--------------------KAATAA 102
F + VVA E+VGR +P FLDRVKEDF +RYG + +
Sbjct: 65 FVFLVVADEAVGRSVPFVFLDRVKEDFMQRYGSSIDEEGQHPLADDADDDDFLLEDRFSI 124
Query: 103 ANSLNREFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELL 162
A +L+REFG +LK+HM YC++HPEEISKL+KVKA ++EVKG+MM+NIEK+L+RGEKIELL
Sbjct: 125 AYNLDREFGPRLKDHMLYCINHPEEISKLSKVKAHLTEVKGIMMDNIEKILERGEKIELL 184
Query: 163 VDKTENLRSQAQDFRQQGTKVRRKMWLQNMKXXXXXXXXXXXXXXXXXXSVCHGFKC 219
V KTE L+SQA F + G ++RRKMWLQN++ +C GFKC
Sbjct: 185 VGKTETLQSQADSFHRHGRELRRKMWLQNLRFKLMVGGAVAALILFLWLIICGGFKC 241
>Os07g0249200 Similar to Vesicle-associated membrane protein 724 (AtVAMP724)
(SYBL1-like protein)
Length = 248
Score = 268 bits (685), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 132/223 (59%), Positives = 161/223 (72%), Gaps = 9/223 (4%)
Query: 6 LIYAFVARGTVVLAEYTEFTGNFTTIAAQCLQKLPASNN---------KFTYNCDGHTFN 56
LIYAFVARGT VLAEYTEFTGNF +AAQCLQ+LPAS +F+Y CDGHTFN
Sbjct: 23 LIYAFVARGTAVLAEYTEFTGNFPALAAQCLQRLPASGGGGSGGGAPARFSYACDGHTFN 82
Query: 57 YLVEDGFTYCVVAVESVGRQIPIAFLDRVKEDFTKRYGGGKAATAAANSLNREFGSKLKE 116
+L+ G+ YCVVA ESV + + +AFL+R+K+DF KRYGGGKA TA A SLN+E+G +K+
Sbjct: 83 FLLHRGYAYCVVAKESVPKNVSVAFLERLKDDFMKRYGGGKADTALAKSLNKEYGPVIKQ 142
Query: 117 HMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDF 176
HMQY +DH EEI K KV+AQVSEVK +M+ENIEK L RGEK+ L DKT +L+SQAQ+F
Sbjct: 143 HMQYVLDHSEEIEKTLKVQAQVSEVKNIMLENIEKTLGRGEKLSELQDKTSDLQSQAQEF 202
Query: 177 RQQGTKVRRKMWLQNMKXXXXXXXXXXXXXXXXXXSVCHGFKC 219
+++G K+RRK WLQNMK SVC GF C
Sbjct: 203 KKKGVKIRRKTWLQNMKIKLVVLGILLLLVIIVWVSVCQGFDC 245
>Os10g0154000 Similar to Vesicle-associated membrane protein 714 (AtVAMP714)
Length = 226
Score = 147 bits (371), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 122/196 (62%), Gaps = 9/196 (4%)
Query: 5 SLIYAFVARGTVVLAEYTEFTGNFTTIAAQCLQKLPA-SNNKFTYNCDGHTFNYL----- 58
+++YA VARGTVVLAE++ +GN +A + L+KLP + ++ + D + F+ L
Sbjct: 2 AIVYAVVARGTVVLAEFSAVSGNAGAVARRILEKLPPDAESRLCFAQDRYIFHVLRSPPP 61
Query: 59 -VEDGFTYCVVAVESVGRQIPIAFLDRVKEDFTKRYGGGKAATAAANSLNREFGSKLKEH 117
DG T+ +A ++ GR+IP +L+ ++ F K YG A A A ++N EF L +
Sbjct: 62 AAADGLTFLCMANDTFGRRIPFLYLEDIQMRFIKNYGR-IAHNALAYAMNDEFSRVLHQQ 120
Query: 118 MQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFR 177
M+Y +P L +++ +VSE+ VM++NIEK+LDRGE+I LLVDKT ++ A FR
Sbjct: 121 MEYFSSNPSA-DTLNRLRGEVSEIHTVMVDNIEKILDRGERISLLVDKTSTMQDSAFHFR 179
Query: 178 QQGTKVRRKMWLQNMK 193
+Q ++RR +W++N K
Sbjct: 180 KQSRRLRRALWMKNAK 195
>Os06g0174400 Similar to Vesicle-associated membrane protein 712 (AtVAMP712)
Length = 221
Score = 137 bits (346), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 123/215 (57%), Gaps = 4/215 (1%)
Query: 5 SLIYAFVARGTVVLAEYTEFTGNFTTIAAQCLQKLPA--SNNKFTYNCDGHTFNYLVEDG 62
+++YA VARGTVVLAE++ N +A Q L++LP +++ +Y D + F+ DG
Sbjct: 2 AILYAVVARGTVVLAEHSAAATNAGAVARQVLERLPGGGADSHVSYTQDRYVFHAKRTDG 61
Query: 63 FTYCVVAVESVGRQIPIAFLDRVKEDFTKRYGGGKAATAAANSLNREFGSKLKEHMQYCV 122
T +A E+ GR+IP AFL+ + F K YG A T+ A +N EF L + M Y
Sbjct: 62 ITALCMADEAAGRRIPFAFLEDIHGRFVKTYGRA-ALTSLAYGMNDEFSRVLSQQMDYYS 120
Query: 123 DHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTK 182
+ P ++ +++ ++S+V+ VM++NI+KVL+RG+++++LVDKT N++ F++Q +
Sbjct: 121 NDPNA-DRINRMRGEISQVRTVMIDNIDKVLERGDRLDMLVDKTANMQGNTIRFKRQARR 179
Query: 183 VRRKMWLQNMKXXXXXXXXXXXXXXXXXXSVCHGF 217
R W +N+K +CHGF
Sbjct: 180 FRNTTWWRNVKLTIALIFLLTVIIYVVLVFMCHGF 214
>Os02g0803600 Longin-like domain containing protein
Length = 226
Score = 129 bits (324), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 117/217 (53%), Gaps = 9/217 (4%)
Query: 8 YAFVARGTVVLAEYTEFT-GNFTTIAAQCLQKLPASNN------KFTYNCDGHTFNYLVE 60
YA VARG VV+AE+ + N +A Q L +L A + +Y D H F+
Sbjct: 6 YAAVARGAVVMAEHGDAAFPNAGAVARQILDRLSAGDGGGGGDCNISYTQDLHVFHVKRT 65
Query: 61 DGFTYCVVAVESVGRQIPIAFLDRVKEDFTKRYGGGKAATAAANSLNREFGSKLKEHMQY 120
DG T +A ++ GR+IP AFL+ + F K YG A TA A ++N EF L + M Y
Sbjct: 66 DGVTALCMADDAAGRRIPFAFLEDIHGRFVKTYGRA-ALTALAYAMNDEFSRVLGQQMDY 124
Query: 121 CVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQG 180
+ P ++++++ ++ +V+ VM++NI+KVL+RG+++ELLVDKT ++ F++Q
Sbjct: 125 YSNDPNA-DRISRMRGEMDQVRNVMIDNIDKVLERGDRLELLVDKTATMQGNTMRFKRQA 183
Query: 181 TKVRRKMWLQNMKXXXXXXXXXXXXXXXXXXSVCHGF 217
+ R +W +N+K +CHGF
Sbjct: 184 RRFRNTVWWRNVKLTAASVFILLVIIYIVLVYMCHGF 220
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.133 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,282,928
Number of extensions: 232303
Number of successful extensions: 677
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 664
Number of HSP's successfully gapped: 9
Length of query: 220
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 123
Effective length of database: 11,971,043
Effective search space: 1472438289
Effective search space used: 1472438289
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)