Os06g0174400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Vesicle-associated membrane protein 712 (AtVAMP712).
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Os06g0174400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Vesicle-associated membrane protein 712 (AtVAMP712).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.73 | 0.229 | 13.2 | 0.502 | 0.96 | 1.11 | -0.0745 | 0.869 | 0.465 | 2.05 | 19.62 | 6224 | -- | -- |
| 23.68 | 0.227 | 13.2 | 0.471 | 0.957 | 0.819 | -0.0437 | -- | 0.418 | 2.01 | 21.1 | 6051 | -- | -- |
| 23.31 | 0.225 | 13.2 | 0.448 | 0.958 | 1.33 | -- | 1.26 | 0.464 | 1.95 | 19.33 | 7634 | -- | -- |
| 23.69 | 0.227 | 13.2 | 0.472 | 0.959 | 0.809 | -- | -- | 0.423 | 2.02 | 21.07 | 6051 | -- | -- |
| 76.87 | 0.408 | 13.2 | 0.355 | -- | 1.58 | -- | 1.52 | 0.455 | -- | 19.23 | 8108 | -- | -- |
| 37.11 | 0.286 | 13.2 | 1.03 | 0.971 | -- | -0.0416 | -- | 0.694 | 2.01 | -- | -- | -- | -- |
| 37.12 | 0.285 | 13.2 | 1.03 | 0.971 | -- | -- | -- | 0.694 | 2.01 | -- | -- | -- | -- |
| 74.09 | 0.401 | 13.2 | 0.671 | -- | 0.818 | -- | -- | 0.434 | -- | 21.7 | 2507 | -- | -- |
| 25.76 | 0.236 | 13.2 | -- | 0.983 | 1.02 | -- | -- | 0.374 | 2 | 18.5 | 29121 | -- | -- |
| 93.84 | 0.453 | 13.1 | 1.07 | -- | -- | -- | -- | 0.717 | -- | -- | -- | -- | -- |
| 65.08 | 0.377 | 13.2 | -- | 0.991 | -- | -- | -- | 0.58 | 2.04 | -- | -- | -- | -- |
| 80.24 | 0.417 | 13.2 | -- | -- | 1.12 | -- | -- | 0.357 | -- | 18.4 | 29817 | -- | -- |
| 124.06 | 0.52 | 13.2 | -- | -- | -- | -- | -- | 0.598 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.93 | temperature | 30 | 270 | < th | dose dependent | sin | 11 | NA |
| 2 | 22.03 | temperature | 15 | 270 | > th | dose dependent | sin | 11 | NA |
| 10 | 22.81 | temperature | 25 | 270 | < th | dose dependent | rect. | 16 | 17 |
| 15 | 23.06 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 28 | 23.21 | temperature | 20 | 1440 | > th | dose dependent | rect. | 22 | 5 |
| 49 | 23.37 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 78 | 23.61 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 9 |
| 80 | 23.62 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 95 | 23.67 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 14 |
| 118 | 23.77 | temperature | 25 | 720 | < th | dose dependent | sin | 15 | NA |
| 150 | 23.83 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 9 |
| 158 | 23.87 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 8 |
| 161 | 23.87 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 170 | 23.90 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 9 |
| 182 | 23.91 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 213 | 23.95 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 13 |
| 231 | 23.97 | temperature | 30 | 1440 | < th | dose dependent | rect. | 22 | 3 |
| 252 | 24.00 | temperature | 20 | 4320 | > th | dose independent | rect. | 3 | 1 |
| 274 | 24.03 | temperature | 20 | 4320 | > th | dose independent | sin | 12 | NA |
| 312 | 24.06 | temperature | 20 | 4320 | < th | dose independent | sin | 12 | NA |
| 313 | 24.06 | temperature | 20 | 4320 | < th | dose independent | rect. | 3 | 1 |
| 326 | 24.06 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 4 |
| 492 | 24.20 | temperature | 10 | 720 | > th | dose dependent | sin | 14 | NA |
| 677 | 24.30 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 15 |
| 708 | 24.32 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 6 |
| 712 | 24.32 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |
| 789 | 24.36 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 816 | 24.37 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 6 |