Os10g0154000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Vesicle-associated membrane protein 714 (AtVAMP714).
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Os10g0154000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Vesicle-associated membrane protein 714 (AtVAMP714).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.83 | 0.209 | 13.1 | 0.372 | 0.318 | -0.309 | 0.976 | 0.306 | 0.36 | 21.6 | 0.7798 | 37 | -- | -- |
| 19.92 | 0.208 | 13.1 | 0.347 | 0.307 | -0.333 | 0.668 | -- | 0.365 | 21.1 | 0.7716 | 46 | -- | -- |
| 21.27 | 0.216 | 13.2 | 0.327 | 0.338 | -0.274 | -- | -0.309 | 0.353 | 21.8 | 0.7798 | 37 | -- | -- |
| 21.47 | 0.216 | 13.1 | 0.335 | 0.296 | -0.341 | -- | -- | 0.366 | 20.9 | 0.56 | 42 | -- | -- |
| 23.67 | 0.228 | 13.1 | 0.337 | -- | -0.472 | -- | -0.282 | 0.355 | -- | 0.7798 | 37 | -- | -- |
| 22.51 | 0.222 | 13.2 | 0.339 | 0.646 | -- | 0.593 | -- | 0.35 | 22.6 | -- | -- | -- | -- |
| 23.96 | 0.229 | 13.2 | 0.315 | 0.643 | -- | -- | -- | 0.348 | 22.7 | -- | -- | -- | -- |
| 24.17 | 0.229 | 13.1 | 0.34 | -- | -0.477 | -- | -- | 0.364 | -- | 0.77 | 35 | -- | -- |
| 24.45 | 0.23 | 13.2 | -- | 0.279 | -0.359 | -- | -- | 0.34 | 20.7 | 0.7093 | 57 | -- | -- |
| 49.45 | 0.329 | 13.1 | 0.327 | -- | -- | -- | -- | 0.352 | -- | -- | -- | -- | -- |
| 26.57 | 0.241 | 13.2 | -- | 0.645 | -- | -- | -- | 0.313 | 22.7 | -- | -- | -- | -- |
| 27.08 | 0.242 | 13.1 | -- | -- | -0.471 | -- | -- | 0.336 | -- | 0.95 | 29 | -- | -- |
| 52.27 | 0.337 | 13.2 | -- | -- | -- | -- | -- | 0.316 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.86 | radiation | 1.0 | 270 | > th | dose independent | rect. | 5 | 1 |
| 12 | 17.94 | radiation | 1.0 | 30 | < th | dose independent | sin | 7 | NA |
| 15 | 18.01 | radiation | 1.0 | 30 | > th | dose independent | sin | 8 | NA |
| 18 | 18.05 | radiation | 1.0 | 90 | < th | dose dependent | sin | 9 | NA |
| 25 | 18.14 | radiation | 10.0 | 10 | < th | dose dependent | sin | 9 | NA |
| 35 | 18.32 | radiation | 1.0 | 90 | < th | dose independent | rect. | 21 | 19 |
| 38 | 18.35 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 6 |
| 40 | 18.36 | temperature | 20.0 | 10 | > th | dose independent | rect. | 22 | 7 |
| 45 | 18.37 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 21 | 22 |
| 51 | 18.43 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 21 | 19 |
| 61 | 18.49 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 23 | 17 |
| 68 | 18.54 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 22 | 7 |
| 75 | 18.60 | radiation | 1.0 | 90 | > th | dose independent | rect. | 5 | 4 |
| 125 | 18.70 | radiation | 1.0 | 90 | < th | dose independent | rect. | 21 | 11 |
| 129 | 18.71 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 6 |
| 151 | 18.75 | radiation | 1.0 | 90 | < th | dose independent | rect. | 21 | 22 |
| 183 | 18.81 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 21 | 11 |
| 202 | 18.87 | temperature | 20.0 | 10 | > th | dose independent | rect. | 10 | 19 |
| 203 | 18.87 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 23 | 9 |
| 211 | 18.90 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 5 | 4 |
| 236 | 18.95 | temperature | 20.0 | 90 | > th | dose independent | rect. | 9 | 19 |
| 284 | 19.02 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 22 | 4 |
| 302 | 19.05 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 5 | 1 |
| 342 | 19.13 | wind | 3.0 | 270 | < th | dose independent | rect. | 4 | 3 |
| 346 | 19.13 | wind | 5.0 | 270 | < th | dose dependent | rect. | 4 | 3 |
| 355 | 19.14 | temperature | 25.0 | 10 | > th | dose independent | rect. | 5 | 5 |
| 376 | 19.17 | wind | 7.0 | 270 | < th | dose dependent | rect. | 3 | 6 |
| 422 | 19.24 | humidity | 80.0 | 270 | > th | dose independent | rect. | 21 | 6 |
| 454 | 19.26 | wind | 3.0 | 270 | < th | dose independent | rect. | 3 | 6 |
| 473 | 19.29 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 18 |
| 476 | 19.29 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 18 |
| 487 | 19.31 | wind | 7.0 | 10 | < th | dose dependent | rect. | 5 | 5 |
| 488 | 19.31 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 21 | 6 |
| 541 | 19.36 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 556 | 19.38 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 569 | 19.39 | humidity | 90.0 | 90 | < th | dose independent | rect. | 5 | 4 |
| 579 | 19.40 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 22 | 7 |
| 580 | 19.40 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 5 | 17 |
| 595 | 19.42 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 14 |
| 601 | 19.42 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 14 |
| 604 | 19.43 | wind | 5.0 | 10 | < th | dose independent | rect. | 5 | 5 |
| 667 | 19.48 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 7 | 22 |
| 669 | 19.49 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 6 |
| 675 | 19.49 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 6 |
| 687 | 19.50 | humidity | 90.0 | 10 | < th | dose independent | rect. | 5 | 5 |
| 698 | 19.50 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 709 | 19.50 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 11 | 18 |
| 718 | 19.52 | humidity | 80.0 | 270 | > th | dose independent | rect. | 23 | 3 |
| 762 | 19.55 | humidity | 80.0 | 10 | > th | dose independent | rect. | 22 | 7 |
| 783 | 19.57 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 3 |
| 792 | 19.57 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 3 |
| 799 | 19.58 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 5 | 5 |
| 803 | 19.58 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 5 | 5 |
| 810 | 19.59 | humidity | 80.0 | 10 | > th | dose independent | rect. | 24 | 5 |
| 836 | 19.60 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 5 | 1 |
| 851 | 19.61 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 10 | 19 |
| 852 | 19.61 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 21 |
| 867 | 19.62 | wind | 9.0 | 10 | < th | dose independent | rect. | 10 | 19 |
| 876 | 19.63 | temperature | 10.0 | 10 | > th | dose independent | rect. | 5 | 5 |
| 878 | 19.63 | humidity | 50.0 | 10 | > th | dose independent | rect. | 5 | 5 |
| 879 | 19.63 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 5 | 5 |
| 880 | 19.63 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 5 | 5 |
| 907 | 19.65 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 6 | 9 |
| 932 | 19.66 | temperature | 30.0 | 270 | < th | dose independent | rect. | 21 | 6 |
| 933 | 19.66 | humidity | 50.0 | 270 | > th | dose independent | rect. | 21 | 6 |
| 936 | 19.66 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 21 | 6 |
| 937 | 19.66 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 21 | 6 |
| 938 | 19.66 | radiation | 1.0 | 270 | < th | dose independent | rect. | 21 | 6 |
| 949 | 19.66 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 18 |
| 950 | 19.66 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 10 | 19 |
| 954 | 19.66 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 21 | 6 |
| 966 | 19.67 | temperature | 10.0 | 270 | > th | dose independent | rect. | 4 | 3 |
| 968 | 19.67 | temperature | 30.0 | 270 | < th | dose independent | rect. | 4 | 3 |
| 969 | 19.67 | humidity | 50.0 | 270 | > th | dose independent | rect. | 4 | 3 |
| 971 | 19.67 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 4 | 3 |
| 972 | 19.67 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 4 | 3 |
| 973 | 19.67 | radiation | 30.0 | 270 | < th | dose independent | rect. | 4 | 3 |
| 978 | 19.67 | wind | 9.0 | 270 | < th | dose independent | rect. | 21 | 6 |
| 980 | 19.67 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 22 | 7 |
| 984 | 19.67 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 21 |
| 988 | 19.67 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 24 | 5 |