Os02g0803600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Longin-like domain containing protein.
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Os02g0803600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Longin-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 140.42 | 0.557 | 4.74 | 0.465 | 0.785 | -1.84 | 0.117 | 0.799 | -0.0394 | 10.3 | 5.607 | 62 | -- | -- |
| 141.34 | 0.554 | 4.75 | 0.523 | 0.989 | -1.66 | -0.668 | -- | -0.0278 | 10.7 | 5.607 | 64 | -- | -- |
| 140.16 | 0.551 | 4.74 | 0.473 | 0.794 | -1.86 | -- | 0.734 | -0.0364 | 10.1 | 5.656 | 67 | -- | -- |
| 143.23 | 0.557 | 4.74 | 0.469 | 0.807 | -1.85 | -- | -- | -0.0347 | 10.1 | 5.726 | 67 | -- | -- |
| 154.15 | 0.578 | 4.79 | 0.376 | -- | -2.24 | -- | 0.698 | -0.105 | -- | 5.885 | 57 | -- | -- |
| 193.77 | 0.653 | 4.67 | 0.515 | 2.84 | -- | -0.882 | -- | 0.108 | 11.7 | -- | -- | -- | -- |
| 197.14 | 0.658 | 4.68 | 0.48 | 2.84 | -- | -- | -- | 0.104 | 11.7 | -- | -- | -- | -- |
| 155.51 | 0.581 | 4.77 | 0.474 | -- | -2.33 | -- | -- | -0.0806 | -- | 6.068 | 47 | -- | -- |
| 148.96 | 0.568 | 4.75 | -- | 0.796 | -1.86 | -- | -- | -0.087 | 9.97 | 5.463 | 69 | -- | -- |
| 705.64 | 1.24 | 4.74 | 0.398 | -- | -- | -- | -- | 0.0691 | -- | -- | -- | -- | -- |
| 203.21 | 0.667 | 4.69 | -- | 2.84 | -- | -- | -- | 0.0505 | 11.7 | -- | -- | -- | -- |
| 161.39 | 0.592 | 4.78 | -- | -- | -2.32 | -- | -- | -0.128 | -- | 6.003 | 41 | -- | -- |
| 709.81 | 1.24 | 4.75 | -- | -- | -- | -- | -- | 0.025 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 146.64 | radiation | 10 | 90 | < th | dose dependent | rect. | 12 | 21 |
| 3 | 146.86 | radiation | 10 | 30 | < th | dose dependent | rect. | 10 | 22 |
| 16 | 147.54 | radiation | 10 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 17 | 147.55 | radiation | 10 | 30 | < th | dose dependent | no | NA | NA |
| 18 | 147.59 | radiation | 10 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 23 | 147.81 | radiation | 10 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 34 | 149.05 | radiation | 10 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 64 | 152.15 | radiation | 1 | 90 | > th | dose independent | rect. | 4 | 14 |
| 77 | 152.34 | radiation | 1 | 90 | < th | dose independent | rect. | 14 | 23 |
| 80 | 152.39 | radiation | 1 | 90 | < th | dose independent | rect. | 13 | 21 |
| 89 | 152.61 | radiation | 1 | 90 | < th | dose independent | rect. | 11 | 23 |
| 90 | 152.62 | radiation | 1 | 90 | > th | dose independent | no | NA | NA |
| 148 | 152.71 | radiation | 1 | 90 | < th | dose independent | no | NA | NA |
| 154 | 152.72 | radiation | 1 | 90 | < th | dose independent | rect. | 9 | 23 |
| 180 | 153.59 | radiation | 10 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 183 | 153.68 | radiation | 1 | 90 | < th | dose independent | rect. | 23 | 23 |
| 217 | 155.51 | radiation | 1 | 90 | < th | dose independent | rect. | 17 | 23 |
| 242 | 156.43 | radiation | 1 | 90 | > th | dose independent | sin | 1 | NA |
| 249 | 156.83 | radiation | 10 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 255 | 157.38 | radiation | 1 | 90 | < th | dose independent | sin | 1 | NA |
| 309 | 158.72 | radiation | 10 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 402 | 159.96 | radiation | 1 | 90 | < th | dose independent | rect. | 21 | 23 |
| 421 | 160.25 | radiation | 1 | 30 | < th | dose dependent | sin | 0 | NA |
| 445 | 160.88 | radiation | 10 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 488 | 162.11 | radiation | 1 | 90 | > th | dose independent | rect. | 13 | 23 |
| 547 | 163.34 | radiation | 1 | 90 | < th | dose independent | rect. | 3 | 23 |
| 554 | 163.81 | radiation | 1 | 90 | < th | dose independent | rect. | 3 | 16 |
| 556 | 163.82 | humidity | 90 | 30 | < th | dose independent | rect. | 21 | 21 |
| 572 | 164.09 | humidity | 90 | 30 | < th | dose independent | rect. | 5 | 13 |
| 577 | 164.18 | radiation | 1 | 90 | < th | dose independent | rect. | 5 | 14 |
| 587 | 164.38 | humidity | 70 | 10 | > th | dose dependent | rect. | 24 | 21 |
| 601 | 164.58 | humidity | 70 | 30 | > th | dose dependent | rect. | 7 | 23 |
| 632 | 165.38 | radiation | 1 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 755 | 166.01 | radiation | 1 | 30 | > th | dose independent | rect. | 11 | 23 |
| 792 | 166.27 | humidity | 90 | 720 | < th | dose dependent | rect. | 6 | 1 |
| 817 | 166.65 | humidity | 70 | 10 | > th | dose dependent | rect. | 12 | 22 |
| 828 | 166.70 | radiation | 1 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 845 | 166.88 | humidity | 90 | 30 | < th | dose independent | rect. | 2 | 16 |
| 861 | 167.04 | radiation | 30 | 720 | < th | dose dependent | rect. | 15 | 4 |
| 881 | 167.24 | humidity | 70 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 945 | 167.75 | humidity | 70 | 10 | > th | dose dependent | no | NA | NA |
| 949 | 167.79 | radiation | 10 | 30 | < th | dose dependent | rect. | 3 | 18 |
| 954 | 167.82 | radiation | 10 | 720 | < th | dose independent | rect. | 15 | 4 |
| 960 | 167.86 | humidity | 70 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 968 | 167.90 | humidity | 60 | 30 | > th | dose dependent | rect. | 12 | 18 |
| 977 | 167.96 | humidity | 70 | 10 | > th | dose dependent | rect. | 15 | 23 |